HEADER HYDROLASE 15-JUL-08 2VY0 TITLE THE X-RAY STRUCTURE OF ENDO-BETA-1,3-GLUCANASE FROM PYROCOCCUS TITLE 2 FURIOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-BETA-1,3-GLUCANASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 35-297; COMPND 5 EC: 3.2.1.39; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PLUW530 KEYWDS HYDROLASE, LAMINARIN, ENDOGLUCANASE, THERMOSTABLE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.ILARI,A.FIORILLO REVDAT 2 13-DEC-23 2VY0 1 REMARK LINK REVDAT 1 24-MAR-09 2VY0 0 JRNL AUTH A.ILARI,A.FIORILLO,S.ANGELACCIO,R.FLORIO,R.CHIARALUCE, JRNL AUTH 2 J.VAN DER OOST,V.CONSALVI JRNL TITL CRYSTAL STRUCTURE OF A FAMILY 16 ENDOGLUCANASE FROM THE JRNL TITL 2 HYPERTHERMOPHILE PYROCOCCUS FURIOSUS-STRUCTURAL BASIS OF JRNL TITL 3 SUBSTRATE RECOGNITION. JRNL REF FEBS J. V. 276 1048 2009 JRNL REFN ISSN 1742-464X JRNL PMID 19154353 JRNL DOI 10.1111/J.1742-4658.2008.06848.X REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 25211 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1317 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1690 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 104 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4265 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.12000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : -1.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.70000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.350 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.216 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.578 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4529 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6198 ; 1.349 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 541 ;11.239 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;35.801 ;24.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 684 ;15.126 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;16.242 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 623 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3580 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2476 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3083 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 421 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 81 ; 0.174 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.146 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2653 ; 0.440 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4324 ; 0.826 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2028 ; 1.152 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1872 ; 1.724 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 34 A 268 2 REMARK 3 1 B 34 B 268 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 918 ; 0.05 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 934 ; 0.41 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 918 ; 0.09 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 934 ; 0.55 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1290036856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25211 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2HYK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES [N-(2 REMARK 280 -HYDROXYETHYL)PIPERAZINE-N-2-ETHANESULFONIC ACID]PH 7.5-8.0 MPD REMARK 280 (2-METHYL-2,4-PENTANEDIOL) 60%-70% REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.38100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 34 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 34 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 MPD A 1299 O HOH A 2138 1.93 REMARK 500 O GLU A 40 O HOH A 2001 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 281 C - N - CA ANGL. DEV. = 16.2 DEGREES REMARK 500 PRO A 281 C - N - CD ANGL. DEV. = -16.6 DEGREES REMARK 500 PRO B 166 C - N - CA ANGL. DEV. = 14.0 DEGREES REMARK 500 PRO B 166 C - N - CD ANGL. DEV. = -14.0 DEGREES REMARK 500 PRO B 281 C - N - CA ANGL. DEV. = -9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 120 -167.15 -164.74 REMARK 500 ASP A 255 42.46 -105.01 REMARK 500 ASP A 275 -167.44 -126.88 REMARK 500 PRO A 281 107.40 25.07 REMARK 500 SER B 120 -165.70 -160.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 133 PRO A 134 78.26 REMARK 500 TRP A 165 PRO A 166 85.77 REMARK 500 PHE A 280 PRO A 281 -94.74 REMARK 500 PRO B 133 PRO B 134 79.20 REMARK 500 TRP B 165 PRO B 166 91.96 REMARK 500 PHE B 280 PRO B 281 136.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1298 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 53 O REMARK 620 2 GLU A 55 OE2 70.3 REMARK 620 3 GLY A 97 O 83.7 90.1 REMARK 620 4 ASP A 287 OD1 152.0 137.2 89.9 REMARK 620 5 ASP A 287 O 75.0 145.2 87.4 77.5 REMARK 620 6 HOH A2011 O 99.5 89.5 176.5 88.1 94.9 REMARK 620 7 HOH A2132 O 145.4 78.0 82.9 59.6 135.8 93.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1298 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 53 O REMARK 620 2 GLU B 55 OE1 75.2 REMARK 620 3 GLY B 97 O 88.2 93.4 REMARK 620 4 ASP B 287 O 75.9 150.9 89.5 REMARK 620 5 ASP B 287 OD1 152.5 132.2 88.3 76.7 REMARK 620 6 HOH B2006 O 100.7 91.6 170.7 89.9 82.5 REMARK 620 7 HOH B2007 O 129.9 55.8 85.2 153.3 76.9 91.2 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MRD A 1301 DBREF 2VY0 A 34 34 PDB 2VY0 2VY0 34 34 DBREF 2VY0 A 35 297 UNP O73951 O73951_PYRFU 35 297 DBREF 2VY0 B 34 34 PDB 2VY0 2VY0 34 34 DBREF 2VY0 B 35 297 UNP O73951 O73951_PYRFU 35 297 SEQRES 1 A 264 MET VAL PRO GLU VAL ILE GLU ILE ASP GLY LYS GLN TRP SEQRES 2 A 264 ARG LEU ILE TRP HIS ASP GLU PHE GLU GLY SER GLU VAL SEQRES 3 A 264 ASN LYS GLU TYR TRP THR PHE GLU LYS GLY ASN GLY ILE SEQRES 4 A 264 ALA TYR GLY ILE PRO GLY TRP GLY ASN GLY GLU LEU GLU SEQRES 5 A 264 TYR TYR THR GLU ASN ASN THR TYR ILE VAL ASN GLY THR SEQRES 6 A 264 LEU VAL ILE GLU ALA ARG LYS GLU ILE ILE THR ASP PRO SEQRES 7 A 264 ASN GLU GLY THR PHE LEU TYR THR SER SER ARG LEU LYS SEQRES 8 A 264 THR GLU GLY LYS VAL GLU PHE SER PRO PRO VAL VAL VAL SEQRES 9 A 264 GLU ALA ARG ILE LYS LEU PRO LYS GLY LYS GLY LEU TRP SEQRES 10 A 264 PRO ALA PHE TRP MET LEU GLY SER ASN ILE ARG GLU VAL SEQRES 11 A 264 GLY TRP PRO ASN CYS GLY GLU ILE ASP ILE MET GLU PHE SEQRES 12 A 264 LEU GLY HIS GLU PRO ARG THR ILE HIS GLY THR VAL HIS SEQRES 13 A 264 GLY PRO GLY TYR SER GLY SER LYS GLY ILE THR ARG ALA SEQRES 14 A 264 TYR THR LEU PRO GLU GLY VAL PRO ASP PHE THR GLU ASP SEQRES 15 A 264 PHE HIS VAL PHE GLY ILE VAL TRP TYR PRO ASP LYS ILE SEQRES 16 A 264 LYS TRP TYR VAL ASP GLY THR PHE TYR HIS GLU VAL THR SEQRES 17 A 264 LYS GLU GLN VAL GLU ALA MET GLY TYR GLU TRP VAL PHE SEQRES 18 A 264 ASP LYS PRO PHE TYR ILE ILE LEU ASN LEU ALA VAL GLY SEQRES 19 A 264 GLY TYR TRP PRO GLY ASN PRO ASP ALA THR THR PRO PHE SEQRES 20 A 264 PRO ALA LYS MET VAL VAL ASP TYR VAL ARG VAL TYR SER SEQRES 21 A 264 PHE VAL SER GLY SEQRES 1 B 264 MET VAL PRO GLU VAL ILE GLU ILE ASP GLY LYS GLN TRP SEQRES 2 B 264 ARG LEU ILE TRP HIS ASP GLU PHE GLU GLY SER GLU VAL SEQRES 3 B 264 ASN LYS GLU TYR TRP THR PHE GLU LYS GLY ASN GLY ILE SEQRES 4 B 264 ALA TYR GLY ILE PRO GLY TRP GLY ASN GLY GLU LEU GLU SEQRES 5 B 264 TYR TYR THR GLU ASN ASN THR TYR ILE VAL ASN GLY THR SEQRES 6 B 264 LEU VAL ILE GLU ALA ARG LYS GLU ILE ILE THR ASP PRO SEQRES 7 B 264 ASN GLU GLY THR PHE LEU TYR THR SER SER ARG LEU LYS SEQRES 8 B 264 THR GLU GLY LYS VAL GLU PHE SER PRO PRO VAL VAL VAL SEQRES 9 B 264 GLU ALA ARG ILE LYS LEU PRO LYS GLY LYS GLY LEU TRP SEQRES 10 B 264 PRO ALA PHE TRP MET LEU GLY SER ASN ILE ARG GLU VAL SEQRES 11 B 264 GLY TRP PRO ASN CYS GLY GLU ILE ASP ILE MET GLU PHE SEQRES 12 B 264 LEU GLY HIS GLU PRO ARG THR ILE HIS GLY THR VAL HIS SEQRES 13 B 264 GLY PRO GLY TYR SER GLY SER LYS GLY ILE THR ARG ALA SEQRES 14 B 264 TYR THR LEU PRO GLU GLY VAL PRO ASP PHE THR GLU ASP SEQRES 15 B 264 PHE HIS VAL PHE GLY ILE VAL TRP TYR PRO ASP LYS ILE SEQRES 16 B 264 LYS TRP TYR VAL ASP GLY THR PHE TYR HIS GLU VAL THR SEQRES 17 B 264 LYS GLU GLN VAL GLU ALA MET GLY TYR GLU TRP VAL PHE SEQRES 18 B 264 ASP LYS PRO PHE TYR ILE ILE LEU ASN LEU ALA VAL GLY SEQRES 19 B 264 GLY TYR TRP PRO GLY ASN PRO ASP ALA THR THR PRO PHE SEQRES 20 B 264 PRO ALA LYS MET VAL VAL ASP TYR VAL ARG VAL TYR SER SEQRES 21 B 264 PHE VAL SER GLY HET CL A1296 1 HET NA A1297 1 HET CA A1298 1 HET MPD A1299 8 HET MPD A1300 8 HET MRD A1301 8 HET CL B1297 1 HET CA B1298 1 HET NA B1299 1 HET NA B1300 1 HET CL B1301 1 HET MRD B1302 8 HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETNAM CA CALCIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL FORMUL 3 CL 3(CL 1-) FORMUL 4 NA 3(NA 1+) FORMUL 5 CA 2(CA 2+) FORMUL 6 MPD 2(C6 H14 O2) FORMUL 8 MRD 2(C6 H14 O2) FORMUL 15 HOH *252(H2 O) HELIX 1 1 GLY A 71 GLY A 75 5 5 HELIX 2 2 ILE A 76 ASN A 81 5 6 HELIX 3 3 ASN A 159 GLY A 164 1 6 HELIX 4 4 SER A 194 GLY A 198 5 5 HELIX 5 5 LYS A 242 MET A 248 1 7 HELIX 6 6 GLY B 71 GLY B 75 5 5 HELIX 7 7 ILE B 76 ASN B 81 5 6 HELIX 8 8 ASN B 159 GLY B 164 1 6 HELIX 9 9 SER B 194 GLY B 198 5 5 HELIX 10 10 LYS B 242 MET B 248 1 7 SHEET 1 AA 4 VAL A 38 ILE A 41 0 SHEET 2 AA 4 LYS A 44 ASP A 52 -1 O LYS A 44 N ILE A 41 SHEET 3 AA 4 ALA A 282 SER A 296 -1 O VAL A 289 N ASP A 52 SHEET 4 AA 4 THR A 98 ASP A 110 -1 O LEU A 99 N VAL A 286 SHEET 1 AB 7 VAL A 38 ILE A 41 0 SHEET 2 AB 7 LYS A 44 ASP A 52 -1 O LYS A 44 N ILE A 41 SHEET 3 AB 7 ALA A 282 SER A 296 -1 O VAL A 289 N ASP A 52 SHEET 4 AB 7 VAL A 135 LYS A 142 -1 O VAL A 136 N TYR A 292 SHEET 5 AB 7 HIS A 217 TYR A 224 -1 O HIS A 217 N ILE A 141 SHEET 6 AB 7 LYS A 227 VAL A 232 -1 O LYS A 227 N TYR A 224 SHEET 7 AB 7 THR A 235 THR A 241 -1 O THR A 235 N VAL A 232 SHEET 1 AC 4 THR A 65 PHE A 66 0 SHEET 2 AC 4 ARG A 122 LYS A 124 -1 O LYS A 124 N THR A 65 SHEET 3 AC 4 PHE A 258 VAL A 266 -1 O LEU A 262 N LEU A 123 SHEET 4 AC 4 GLU A 130 PHE A 131 -1 O PHE A 131 N PHE A 258 SHEET 1 AD 7 THR A 65 PHE A 66 0 SHEET 2 AD 7 ARG A 122 LYS A 124 -1 O LYS A 124 N THR A 65 SHEET 3 AD 7 PHE A 258 VAL A 266 -1 O LEU A 262 N LEU A 123 SHEET 4 AD 7 LEU A 149 GLY A 157 -1 O TRP A 150 N ALA A 265 SHEET 5 AD 7 GLU A 170 PHE A 176 -1 O ILE A 171 N MET A 155 SHEET 6 AD 7 THR A 183 HIS A 189 -1 O HIS A 185 N GLU A 175 SHEET 7 AD 7 ILE A 199 THR A 204 -1 O ILE A 199 N VAL A 188 SHEET 1 BA 4 VAL B 38 ILE B 41 0 SHEET 2 BA 4 LYS B 44 ASP B 52 -1 O LYS B 44 N ILE B 41 SHEET 3 BA 4 PRO B 281 SER B 296 -1 O VAL B 289 N ASP B 52 SHEET 4 BA 4 THR B 98 ASP B 110 -1 O LEU B 99 N VAL B 286 SHEET 1 BB 7 VAL B 38 ILE B 41 0 SHEET 2 BB 7 LYS B 44 ASP B 52 -1 O LYS B 44 N ILE B 41 SHEET 3 BB 7 PRO B 281 SER B 296 -1 O VAL B 289 N ASP B 52 SHEET 4 BB 7 VAL B 135 LYS B 142 -1 O VAL B 136 N TYR B 292 SHEET 5 BB 7 HIS B 217 TYR B 224 -1 O HIS B 217 N ILE B 141 SHEET 6 BB 7 LYS B 227 VAL B 232 -1 O LYS B 227 N TYR B 224 SHEET 7 BB 7 THR B 235 THR B 241 -1 O THR B 235 N VAL B 232 SHEET 1 BC10 THR B 65 PHE B 66 0 SHEET 2 BC10 ARG B 122 LYS B 124 -1 O LYS B 124 N THR B 65 SHEET 3 BC10 PHE B 258 VAL B 266 -1 O LEU B 262 N LEU B 123 SHEET 4 BC10 GLU B 130 PHE B 131 -1 O PHE B 131 N PHE B 258 SHEET 5 BC10 PHE B 258 VAL B 266 -1 O PHE B 258 N PHE B 131 SHEET 6 BC10 ILE B 199 THR B 204 0 SHEET 7 BC10 THR B 183 HIS B 189 -1 O ILE B 184 N TYR B 203 SHEET 8 BC10 GLU B 170 PHE B 176 -1 O GLU B 170 N HIS B 189 SHEET 9 BC10 LEU B 149 GLY B 157 -1 O PRO B 151 N PHE B 176 SHEET 10 BC10 PHE B 258 VAL B 266 -1 O TYR B 259 N LEU B 156 LINK O GLU A 53 CA CA A1298 1555 1555 2.41 LINK OE2 GLU A 55 CA CA A1298 1555 1555 2.97 LINK O GLY A 97 CA CA A1298 1555 1555 2.28 LINK OD1 ASP A 287 CA CA A1298 1555 1555 2.40 LINK O ASP A 287 CA CA A1298 1555 1555 2.40 LINK CA CA A1298 O HOH A2011 1555 1555 2.28 LINK CA CA A1298 O HOH A2132 1555 1555 2.88 LINK O GLU B 53 CA CA B1298 1555 1555 2.25 LINK OE1 GLU B 55 CA CA B1298 1555 1555 3.13 LINK O GLY B 97 CA CA B1298 1555 1555 2.14 LINK O ASP B 287 CA CA B1298 1555 1555 2.39 LINK OD1 ASP B 287 CA CA B1298 1555 1555 2.29 LINK CA CA B1298 O HOH B2006 1555 1555 2.36 LINK CA CA B1298 O HOH B2007 1555 1555 2.33 SITE 1 AC1 6 GLU B 53 GLU B 55 GLY B 97 ASP B 287 SITE 2 AC1 6 HOH B2006 HOH B2007 SITE 1 AC2 6 GLU A 53 GLU A 55 GLY A 97 ASP A 287 SITE 2 AC2 6 HOH A2011 HOH A2132 SITE 1 AC3 2 TYR B 74 LYS B 124 SITE 1 AC4 3 LYS B 68 GLU B 89 ASN B 90 SITE 1 AC5 12 ASN B 81 TRP B 150 ALA B 152 TRP B 154 SITE 2 AC5 12 GLU B 170 ASP B 172 GLU B 175 HIS B 189 SITE 3 AC5 12 HOH B2018 HOH B2031 HOH B2041 HOH B2048 SITE 1 AC6 9 ASN A 81 GLU A 83 ARG A 122 TRP A 154 SITE 2 AC6 9 GLU A 170 ASP A 172 GLU A 175 HOH A2031 SITE 3 AC6 9 HOH A2138 SITE 1 AC7 2 HOH A2040 HOH A2074 SITE 1 AC8 5 GLU A 251 TRP A 252 ASP A 255 LYS A 256 SITE 2 AC8 5 HOH A2139 CRYST1 44.363 84.762 69.232 90.00 104.97 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022541 0.000000 0.006027 0.00000 SCALE2 0.000000 0.011798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014952 0.00000 MTRIX1 1 -0.985630 -0.096630 -0.138540 6.71992 1 MTRIX2 1 -0.142560 0.915780 0.375520 -17.46957 1 MTRIX3 1 0.090590 0.389870 -0.916400 86.43271 1