data_2VY2 # _entry.id 2VY2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2VY2 pdb_00002vy2 10.2210/pdb2vy2/pdb PDBE EBI-36898 ? ? WWPDB D_1290036898 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2VY1 _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF LEAFY TRANSCRIPTION FACTOR FROM ARABIDOPSIS THALIANA IN COMPLEX WITH DNA FROM AP1 PROMOTER' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2VY2 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-07-16 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hames, C.' 1 'Ptchelkine, D.' 2 'Grimm, C.' 3 'Thevenon, E.' 4 'Moyroud, E.' 5 'Gerard, F.' 6 'Martiel, J.L.' 7 'Benlloch, R.' 8 'Parcy, F.' 9 'Muller, C.W.' 10 # _citation.id primary _citation.title 'Structural Basis for Leafy Floral Switch Function and Similarity with Helix-Turn-Helix Proteins.' _citation.journal_abbrev 'Embo J.' _citation.journal_volume 27 _citation.page_first 2628 _citation.page_last ? _citation.year 2008 _citation.journal_id_ASTM EMJODG _citation.country UK _citation.journal_id_ISSN 0261-4189 _citation.journal_id_CSD 0897 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18784751 _citation.pdbx_database_id_DOI 10.1038/EMBOJ.2008.184 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hames, C.' 1 ? primary 'Ptchelkine, D.' 2 ? primary 'Grimm, C.' 3 ? primary 'Thevenon, E.' 4 ? primary 'Moyroud, E.' 5 ? primary 'Gerard, F.' 6 ? primary 'Martiel, J.L.' 7 ? primary 'Benlloch, R.' 8 ? primary 'Parcy, F.' 9 ? primary 'Muller, C.W.' 10 ? # _cell.entry_id 2VY2 _cell.length_a 98.850 _cell.length_b 98.850 _cell.length_c 177.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2VY2 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PROTEIN LEAFY' 21892.002 1 ? ? 'DNA BINDING DOMAIN, RESIDUES 231-424' ? 2 polymer syn ;5'-D(*AP*TP*TP*TP*AP*AP*TP*CP*CP*AP *AP*TP*GP*GP*TP*TP*AP*CP*AP*A)-3' ; 6116.004 1 ? ? ? ? 3 water nat water 18.015 46 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 LEAFY 2 'DNA AG-I SITE' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;LGTERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLLQVQTIAKDRGEKCPTKVTNQVFRYAKKSGASYINKPKM RHYVHCYALHCLDEEASNALRRAFKERGENVGSWRQACYKPLVNIACRHGWDIDAVFNAHPRLSIWYVPTKLRQLCHLER NNAVAAAAALVGGISCTGSSTSGRGGCGGDDLRF ; ;LGTERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLLQVQTIAKDRGEKCPTKVTNQVFRYAKKSGASYINKPKM RHYVHCYALHCLDEEASNALRRAFKERGENVGSWRQACYKPLVNIACRHGWDIDAVFNAHPRLSIWYVPTKLRQLCHLER NNAVAAAAALVGGISCTGSSTSGRGGCGGDDLRF ; A ? 2 polydeoxyribonucleotide no no '(DA)(DT)(DT)(DT)(DA)(DA)(DT)(DC)(DC)(DA)(DA)(DT)(DG)(DG)(DT)(DT)(DA)(DC)(DA)(DA)' ATTTAATCCAATGGTTACAA W ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 GLY n 1 3 THR n 1 4 GLU n 1 5 ARG n 1 6 GLN n 1 7 ARG n 1 8 GLU n 1 9 HIS n 1 10 PRO n 1 11 PHE n 1 12 ILE n 1 13 VAL n 1 14 THR n 1 15 GLU n 1 16 PRO n 1 17 GLY n 1 18 GLU n 1 19 VAL n 1 20 ALA n 1 21 ARG n 1 22 GLY n 1 23 LYS n 1 24 LYS n 1 25 ASN n 1 26 GLY n 1 27 LEU n 1 28 ASP n 1 29 TYR n 1 30 LEU n 1 31 PHE n 1 32 HIS n 1 33 LEU n 1 34 TYR n 1 35 GLU n 1 36 GLN n 1 37 CYS n 1 38 ARG n 1 39 GLU n 1 40 PHE n 1 41 LEU n 1 42 LEU n 1 43 GLN n 1 44 VAL n 1 45 GLN n 1 46 THR n 1 47 ILE n 1 48 ALA n 1 49 LYS n 1 50 ASP n 1 51 ARG n 1 52 GLY n 1 53 GLU n 1 54 LYS n 1 55 CYS n 1 56 PRO n 1 57 THR n 1 58 LYS n 1 59 VAL n 1 60 THR n 1 61 ASN n 1 62 GLN n 1 63 VAL n 1 64 PHE n 1 65 ARG n 1 66 TYR n 1 67 ALA n 1 68 LYS n 1 69 LYS n 1 70 SER n 1 71 GLY n 1 72 ALA n 1 73 SER n 1 74 TYR n 1 75 ILE n 1 76 ASN n 1 77 LYS n 1 78 PRO n 1 79 LYS n 1 80 MET n 1 81 ARG n 1 82 HIS n 1 83 TYR n 1 84 VAL n 1 85 HIS n 1 86 CYS n 1 87 TYR n 1 88 ALA n 1 89 LEU n 1 90 HIS n 1 91 CYS n 1 92 LEU n 1 93 ASP n 1 94 GLU n 1 95 GLU n 1 96 ALA n 1 97 SER n 1 98 ASN n 1 99 ALA n 1 100 LEU n 1 101 ARG n 1 102 ARG n 1 103 ALA n 1 104 PHE n 1 105 LYS n 1 106 GLU n 1 107 ARG n 1 108 GLY n 1 109 GLU n 1 110 ASN n 1 111 VAL n 1 112 GLY n 1 113 SER n 1 114 TRP n 1 115 ARG n 1 116 GLN n 1 117 ALA n 1 118 CYS n 1 119 TYR n 1 120 LYS n 1 121 PRO n 1 122 LEU n 1 123 VAL n 1 124 ASN n 1 125 ILE n 1 126 ALA n 1 127 CYS n 1 128 ARG n 1 129 HIS n 1 130 GLY n 1 131 TRP n 1 132 ASP n 1 133 ILE n 1 134 ASP n 1 135 ALA n 1 136 VAL n 1 137 PHE n 1 138 ASN n 1 139 ALA n 1 140 HIS n 1 141 PRO n 1 142 ARG n 1 143 LEU n 1 144 SER n 1 145 ILE n 1 146 TRP n 1 147 TYR n 1 148 VAL n 1 149 PRO n 1 150 THR n 1 151 LYS n 1 152 LEU n 1 153 ARG n 1 154 GLN n 1 155 LEU n 1 156 CYS n 1 157 HIS n 1 158 LEU n 1 159 GLU n 1 160 ARG n 1 161 ASN n 1 162 ASN n 1 163 ALA n 1 164 VAL n 1 165 ALA n 1 166 ALA n 1 167 ALA n 1 168 ALA n 1 169 ALA n 1 170 LEU n 1 171 VAL n 1 172 GLY n 1 173 GLY n 1 174 ILE n 1 175 SER n 1 176 CYS n 1 177 THR n 1 178 GLY n 1 179 SER n 1 180 SER n 1 181 THR n 1 182 SER n 1 183 GLY n 1 184 ARG n 1 185 GLY n 1 186 GLY n 1 187 CYS n 1 188 GLY n 1 189 GLY n 1 190 ASP n 1 191 ASP n 1 192 LEU n 1 193 ARG n 1 194 PHE n 2 1 DA y 2 1 DT y 2 2 DT n 2 3 DT n 2 4 DT y 2 4 DG y 2 5 DA y 2 5 DT y 2 6 DA n 2 7 DT y 2 7 DA y 2 8 DC n 2 9 DC n 2 10 DA n 2 11 DA y 2 11 DT y 2 12 DT n 2 13 DG n 2 14 DG n 2 15 DT y 2 15 DA y 2 16 DT n 2 17 DA y 2 17 DT y 2 18 DC y 2 18 DA y 2 19 DA n 2 20 DA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'MOUSE-EAR CRESS' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue 'FLOWER MERISTEM' _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ARABIDOPSIS THALIANA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3702 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ FLOWER _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'ROSETTABLUE(DE3)PLYS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PETM-11 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description NONE # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'ARABIDOPSIS THALIANA' _pdbx_entity_src_syn.organism_common_name 'MOUSE-EAR CRESS' _pdbx_entity_src_syn.ncbi_taxonomy_id 3702 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP LFY_ARATH 1 ? ? Q00958 ? 2 PDB 2VY2 2 ? ? 2VY2 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2VY2 A 1 ? 194 ? Q00958 231 ? 424 ? 231 424 2 2 2VY2 W 1 ? 20 ? 2VY2 1 ? 20 ? 1 20 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 2 2VY2 DT W 1 ? PDB 2VY2 DA 1 microheterogeneity 1 1 2 2VY2 DG W 4 ? PDB 2VY2 DT 4 microheterogeneity 4 2 2 2VY2 DT W 5 ? PDB 2VY2 DA 5 microheterogeneity 5 3 2 2VY2 DA W 7 ? PDB 2VY2 DT 7 microheterogeneity 7 4 2 2VY2 DT W 11 ? PDB 2VY2 DA 11 microheterogeneity 11 5 2 2VY2 DA W 15 ? PDB 2VY2 DT 15 microheterogeneity 15 6 2 2VY2 DT W 17 ? PDB 2VY2 DA 17 microheterogeneity 17 7 2 2VY2 DA W 18 ? PDB 2VY2 DC 18 microheterogeneity 18 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2VY2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 5.21 _exptl_crystal.density_percent_sol 78.94 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '10% PEG 400, 100 MM KCL, 10 MM CACL2, 50 MM HEPES (NAOH) PH 7.0' # _diffrn.id 1 _diffrn.ambient_temp 77 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2007-07-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.976 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength 0.976 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2VY2 _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 2.30 _reflns.number_obs 328932 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.70 _reflns.B_iso_Wilson_estimate 38.53 _reflns.pdbx_redundancy 14 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.40 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.75 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.40 _reflns_shell.pdbx_redundancy 11.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2VY2 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 23413 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.05 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.951 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 99.85 _refine.ls_R_factor_obs 0.2315 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2300 _refine.ls_R_factor_R_free 0.2619 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.05 _refine.ls_number_reflns_R_free 1183 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 46.22 _refine.aniso_B[1][1] -1.6689 _refine.aniso_B[2][2] -1.6689 _refine.aniso_B[3][3] -6.5370 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.376 _refine.solvent_model_param_bsol 49.940 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 2VY1' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.33 _refine.pdbx_overall_phase_error 22.92 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1326 _refine_hist.pdbx_number_atoms_nucleic_acid 565 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 46 _refine_hist.number_atoms_total 1937 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 19.951 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.010 ? ? 2004 'X-RAY DIFFRACTION' ? f_angle_d 1.394 ? ? 2838 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 21.327 ? ? 785 'X-RAY DIFFRACTION' ? f_chiral_restr 0.071 ? ? 298 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 269 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.3000 2.4045 2701 0.2876 100.00 0.3163 . . 145 . . 'X-RAY DIFFRACTION' . 2.4045 2.5311 2726 0.2688 100.00 0.2756 . . 149 . . 'X-RAY DIFFRACTION' . 2.5311 2.6893 2728 0.2506 100.00 0.2768 . . 144 . . 'X-RAY DIFFRACTION' . 2.6893 2.8964 2736 0.2547 100.00 0.2972 . . 156 . . 'X-RAY DIFFRACTION' . 2.8964 3.1868 2773 0.2636 100.00 0.2751 . . 134 . . 'X-RAY DIFFRACTION' . 3.1868 3.6455 2768 0.2267 100.00 0.2748 . . 155 . . 'X-RAY DIFFRACTION' . 3.6455 4.5837 2819 0.1854 100.00 0.2238 . . 158 . . 'X-RAY DIFFRACTION' . 4.5837 19.9522 2979 0.1918 99.00 0.2353 . . 142 . . # _struct.entry_id 2VY2 _struct.title 'Structure of LEAFY transcription factor from Arabidopsis thaliana in complex with DNA from AG-I promoter' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2VY2 _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text ;DNA-BINDING, POLYMORPHISM, TRANSCRIPTION, DEVELOPMENTAL PROTEIN TRANSCRIPTION REGULATION, HOMEOTIC GENES, ACTIVATOR, DIFFERENTIATION FLOWER DEVELOPMENT, FLOWERING, COILED COIL GENES ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 26 ? ARG A 51 ? GLY A 256 ARG A 281 1 ? 26 HELX_P HELX_P2 2 THR A 60 ? SER A 70 ? THR A 290 SER A 300 1 ? 11 HELX_P HELX_P3 3 ASN A 76 ? ARG A 107 ? ASN A 306 ARG A 337 1 ? 32 HELX_P HELX_P4 4 ASN A 110 ? ARG A 128 ? ASN A 340 ARG A 358 1 ? 19 HELX_P HELX_P5 5 ASP A 132 ? ALA A 139 ? ASP A 362 ALA A 369 1 ? 8 HELX_P HELX_P6 6 PRO A 149 ? ALA A 167 ? PRO A 379 ALA A 397 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DT 2 N3 ? ? ? 1_555 B DA 20 N1 ? ? W DT 2 W DA 20 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DT 2 O4 ? ? ? 1_555 B DA 20 N6 ? ? W DT 2 W DA 20 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DT 3 N3 ? ? ? 1_555 B DA 19 N1 ? ? W DT 3 W DA 19 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DT 3 O4 ? ? ? 1_555 B DA 19 N6 ? ? W DT 3 W DA 19 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DT 4 O4 A ? ? 1_555 B DC 18 N4 A ? W DT 4 W DC 18 8_555 ? ? ? ? ? ? 'DT-DC MISPAIR' ? ? ? hydrog6 hydrog ? ? B DA 5 N1 A ? ? 1_555 B DA 17 N6 A ? W DA 5 W DA 17 8_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog7 hydrog ? ? B DA 5 N6 A ? ? 1_555 B DA 17 N1 A ? W DA 5 W DA 17 8_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog8 hydrog ? ? B DA 6 N1 ? ? ? 1_555 B DT 16 N3 ? ? W DA 6 W DT 16 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 6 N6 ? ? ? 1_555 B DT 16 O4 ? ? W DA 6 W DT 16 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 8 N3 ? ? ? 1_555 B DG 14 N1 ? ? W DC 8 W DG 14 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 8 N4 ? ? ? 1_555 B DG 14 O6 ? ? W DC 8 W DG 14 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 8 O2 ? ? ? 1_555 B DG 14 N2 ? ? W DC 8 W DG 14 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 9 N3 ? ? ? 1_555 B DG 13 N1 ? ? W DC 9 W DG 13 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 9 N4 ? ? ? 1_555 B DG 13 O6 ? ? W DC 9 W DG 13 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 9 O2 ? ? ? 1_555 B DG 13 N2 ? ? W DC 9 W DG 13 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DA 10 N1 ? ? ? 1_555 B DT 12 N3 ? ? W DA 10 W DT 12 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DA 10 N6 ? ? ? 1_555 B DT 12 O4 ? ? W DA 10 W DT 12 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DA 11 N1 A ? ? 1_555 B DA 11 N6 A ? W DA 11 W DA 11 8_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog19 hydrog ? ? B DA 11 N6 A ? ? 1_555 B DA 11 N1 A ? W DA 11 W DA 11 8_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog20 hydrog ? ? B DT 12 N3 ? ? ? 1_555 B DA 10 N1 ? ? W DT 12 W DA 10 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DT 12 O4 ? ? ? 1_555 B DA 10 N6 ? ? W DT 12 W DA 10 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 13 N1 ? ? ? 1_555 B DC 9 N3 ? ? W DG 13 W DC 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 13 N2 ? ? ? 1_555 B DC 9 O2 ? ? W DG 13 W DC 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 13 O6 ? ? ? 1_555 B DC 9 N4 ? ? W DG 13 W DC 9 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 14 N1 ? ? ? 1_555 B DC 8 N3 ? ? W DG 14 W DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 14 N2 ? ? ? 1_555 B DC 8 O2 ? ? W DG 14 W DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 14 O6 ? ? ? 1_555 B DC 8 N4 ? ? W DG 14 W DC 8 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DT 16 N3 ? ? ? 1_555 B DA 6 N1 ? ? W DT 16 W DA 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DT 16 O4 ? ? ? 1_555 B DA 6 N6 ? ? W DT 16 W DA 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DA 17 N1 A ? ? 1_555 B DA 5 N6 A ? W DA 17 W DA 5 8_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog31 hydrog ? ? B DA 17 N6 A ? ? 1_555 B DA 5 N1 A ? W DA 17 W DA 5 8_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog32 hydrog ? ? B DC 18 N4 A ? ? 1_555 B DT 4 O4 A ? W DC 18 W DT 4 8_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog33 hydrog ? ? B DA 19 N1 ? ? ? 1_555 B DT 3 N3 ? ? W DA 19 W DT 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B DA 19 N6 ? ? ? 1_555 B DT 3 O4 ? ? W DA 19 W DT 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B DA 20 N1 ? ? ? 1_555 B DT 2 N3 ? ? W DA 20 W DT 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? B DA 20 N6 ? ? ? 1_555 B DT 2 O4 ? ? W DA 20 W DT 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2VY2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2VY2 _atom_sites.fract_transf_matrix[1][1] 0.010116 _atom_sites.fract_transf_matrix[1][2] 0.005841 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011681 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005637 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 231 ? ? ? A . n A 1 2 GLY 2 232 ? ? ? A . n A 1 3 THR 3 233 ? ? ? A . n A 1 4 GLU 4 234 ? ? ? A . n A 1 5 ARG 5 235 ? ? ? A . n A 1 6 GLN 6 236 ? ? ? A . n A 1 7 ARG 7 237 237 ARG ARG A . n A 1 8 GLU 8 238 238 GLU GLU A . n A 1 9 HIS 9 239 239 HIS HIS A . n A 1 10 PRO 10 240 240 PRO PRO A . n A 1 11 PHE 11 241 241 PHE PHE A . n A 1 12 ILE 12 242 242 ILE ILE A . n A 1 13 VAL 13 243 243 VAL VAL A . n A 1 14 THR 14 244 244 THR THR A . n A 1 15 GLU 15 245 245 GLU GLU A . n A 1 16 PRO 16 246 246 PRO PRO A . n A 1 17 GLY 17 247 247 GLY GLY A . n A 1 18 GLU 18 248 248 GLU GLU A . n A 1 19 VAL 19 249 249 VAL VAL A . n A 1 20 ALA 20 250 250 ALA ALA A . n A 1 21 ARG 21 251 251 ARG ARG A . n A 1 22 GLY 22 252 252 GLY GLY A . n A 1 23 LYS 23 253 253 LYS LYS A . n A 1 24 LYS 24 254 254 LYS LYS A . n A 1 25 ASN 25 255 255 ASN ASN A . n A 1 26 GLY 26 256 256 GLY GLY A . n A 1 27 LEU 27 257 257 LEU LEU A . n A 1 28 ASP 28 258 258 ASP ASP A . n A 1 29 TYR 29 259 259 TYR TYR A . n A 1 30 LEU 30 260 260 LEU LEU A . n A 1 31 PHE 31 261 261 PHE PHE A . n A 1 32 HIS 32 262 262 HIS HIS A . n A 1 33 LEU 33 263 263 LEU LEU A . n A 1 34 TYR 34 264 264 TYR TYR A . n A 1 35 GLU 35 265 265 GLU GLU A . n A 1 36 GLN 36 266 266 GLN GLN A . n A 1 37 CYS 37 267 267 CYS CYS A . n A 1 38 ARG 38 268 268 ARG ARG A . n A 1 39 GLU 39 269 269 GLU GLU A . n A 1 40 PHE 40 270 270 PHE PHE A . n A 1 41 LEU 41 271 271 LEU LEU A . n A 1 42 LEU 42 272 272 LEU LEU A . n A 1 43 GLN 43 273 273 GLN GLN A . n A 1 44 VAL 44 274 274 VAL VAL A . n A 1 45 GLN 45 275 275 GLN GLN A . n A 1 46 THR 46 276 276 THR THR A . n A 1 47 ILE 47 277 277 ILE ILE A . n A 1 48 ALA 48 278 278 ALA ALA A . n A 1 49 LYS 49 279 279 LYS LYS A . n A 1 50 ASP 50 280 280 ASP ASP A . n A 1 51 ARG 51 281 281 ARG ARG A . n A 1 52 GLY 52 282 282 GLY GLY A . n A 1 53 GLU 53 283 283 GLU GLU A . n A 1 54 LYS 54 284 284 LYS LYS A . n A 1 55 CYS 55 285 285 CYS CYS A . n A 1 56 PRO 56 286 286 PRO PRO A . n A 1 57 THR 57 287 287 THR THR A . n A 1 58 LYS 58 288 288 LYS LYS A . n A 1 59 VAL 59 289 289 VAL VAL A . n A 1 60 THR 60 290 290 THR THR A . n A 1 61 ASN 61 291 291 ASN ASN A . n A 1 62 GLN 62 292 292 GLN GLN A . n A 1 63 VAL 63 293 293 VAL VAL A . n A 1 64 PHE 64 294 294 PHE PHE A . n A 1 65 ARG 65 295 295 ARG ARG A . n A 1 66 TYR 66 296 296 TYR TYR A . n A 1 67 ALA 67 297 297 ALA ALA A . n A 1 68 LYS 68 298 298 LYS LYS A . n A 1 69 LYS 69 299 299 LYS LYS A . n A 1 70 SER 70 300 300 SER SER A . n A 1 71 GLY 71 301 301 GLY GLY A . n A 1 72 ALA 72 302 302 ALA ALA A . n A 1 73 SER 73 303 303 SER SER A . n A 1 74 TYR 74 304 304 TYR TYR A . n A 1 75 ILE 75 305 305 ILE ILE A . n A 1 76 ASN 76 306 306 ASN ASN A . n A 1 77 LYS 77 307 307 LYS LYS A . n A 1 78 PRO 78 308 308 PRO PRO A . n A 1 79 LYS 79 309 309 LYS LYS A . n A 1 80 MET 80 310 310 MET MET A . n A 1 81 ARG 81 311 311 ARG ARG A . n A 1 82 HIS 82 312 312 HIS HIS A . n A 1 83 TYR 83 313 313 TYR TYR A . n A 1 84 VAL 84 314 314 VAL VAL A . n A 1 85 HIS 85 315 315 HIS HIS A . n A 1 86 CYS 86 316 316 CYS CYS A . n A 1 87 TYR 87 317 317 TYR TYR A . n A 1 88 ALA 88 318 318 ALA ALA A . n A 1 89 LEU 89 319 319 LEU LEU A . n A 1 90 HIS 90 320 320 HIS HIS A . n A 1 91 CYS 91 321 321 CYS CYS A . n A 1 92 LEU 92 322 322 LEU LEU A . n A 1 93 ASP 93 323 323 ASP ASP A . n A 1 94 GLU 94 324 324 GLU GLU A . n A 1 95 GLU 95 325 325 GLU GLU A . n A 1 96 ALA 96 326 326 ALA ALA A . n A 1 97 SER 97 327 327 SER SER A . n A 1 98 ASN 98 328 328 ASN ASN A . n A 1 99 ALA 99 329 329 ALA ALA A . n A 1 100 LEU 100 330 330 LEU LEU A . n A 1 101 ARG 101 331 331 ARG ARG A . n A 1 102 ARG 102 332 332 ARG ARG A . n A 1 103 ALA 103 333 333 ALA ALA A . n A 1 104 PHE 104 334 334 PHE PHE A . n A 1 105 LYS 105 335 335 LYS LYS A . n A 1 106 GLU 106 336 336 GLU GLU A . n A 1 107 ARG 107 337 337 ARG ARG A . n A 1 108 GLY 108 338 338 GLY GLY A . n A 1 109 GLU 109 339 339 GLU GLU A . n A 1 110 ASN 110 340 340 ASN ASN A . n A 1 111 VAL 111 341 341 VAL VAL A . n A 1 112 GLY 112 342 342 GLY GLY A . n A 1 113 SER 113 343 343 SER SER A . n A 1 114 TRP 114 344 344 TRP TRP A . n A 1 115 ARG 115 345 345 ARG ARG A . n A 1 116 GLN 116 346 346 GLN GLN A . n A 1 117 ALA 117 347 347 ALA ALA A . n A 1 118 CYS 118 348 348 CYS CYS A . n A 1 119 TYR 119 349 349 TYR TYR A . n A 1 120 LYS 120 350 350 LYS LYS A . n A 1 121 PRO 121 351 351 PRO PRO A . n A 1 122 LEU 122 352 352 LEU LEU A . n A 1 123 VAL 123 353 353 VAL VAL A . n A 1 124 ASN 124 354 354 ASN ASN A . n A 1 125 ILE 125 355 355 ILE ILE A . n A 1 126 ALA 126 356 356 ALA ALA A . n A 1 127 CYS 127 357 357 CYS CYS A . n A 1 128 ARG 128 358 358 ARG ARG A . n A 1 129 HIS 129 359 359 HIS HIS A . n A 1 130 GLY 130 360 360 GLY GLY A . n A 1 131 TRP 131 361 361 TRP TRP A . n A 1 132 ASP 132 362 362 ASP ASP A . n A 1 133 ILE 133 363 363 ILE ILE A . n A 1 134 ASP 134 364 364 ASP ASP A . n A 1 135 ALA 135 365 365 ALA ALA A . n A 1 136 VAL 136 366 366 VAL VAL A . n A 1 137 PHE 137 367 367 PHE PHE A . n A 1 138 ASN 138 368 368 ASN ASN A . n A 1 139 ALA 139 369 369 ALA ALA A . n A 1 140 HIS 140 370 370 HIS HIS A . n A 1 141 PRO 141 371 371 PRO PRO A . n A 1 142 ARG 142 372 372 ARG ARG A . n A 1 143 LEU 143 373 373 LEU LEU A . n A 1 144 SER 144 374 374 SER SER A . n A 1 145 ILE 145 375 375 ILE ILE A . n A 1 146 TRP 146 376 376 TRP TRP A . n A 1 147 TYR 147 377 377 TYR TYR A . n A 1 148 VAL 148 378 378 VAL VAL A . n A 1 149 PRO 149 379 379 PRO PRO A . n A 1 150 THR 150 380 380 THR THR A . n A 1 151 LYS 151 381 381 LYS LYS A . n A 1 152 LEU 152 382 382 LEU LEU A . n A 1 153 ARG 153 383 383 ARG ARG A . n A 1 154 GLN 154 384 384 GLN GLN A . n A 1 155 LEU 155 385 385 LEU LEU A . n A 1 156 CYS 156 386 386 CYS CYS A . n A 1 157 HIS 157 387 387 HIS HIS A . n A 1 158 LEU 158 388 388 LEU LEU A . n A 1 159 GLU 159 389 389 GLU GLU A . n A 1 160 ARG 160 390 390 ARG ARG A . n A 1 161 ASN 161 391 391 ASN ASN A . n A 1 162 ASN 162 392 392 ASN ASN A . n A 1 163 ALA 163 393 393 ALA ALA A . n A 1 164 VAL 164 394 394 VAL VAL A . n A 1 165 ALA 165 395 395 ALA ALA A . n A 1 166 ALA 166 396 396 ALA ALA A . n A 1 167 ALA 167 397 397 ALA ALA A . n A 1 168 ALA 168 398 398 ALA ALA A . n A 1 169 ALA 169 399 399 ALA ALA A . n A 1 170 LEU 170 400 ? ? ? A . n A 1 171 VAL 171 401 ? ? ? A . n A 1 172 GLY 172 402 ? ? ? A . n A 1 173 GLY 173 403 ? ? ? A . n A 1 174 ILE 174 404 ? ? ? A . n A 1 175 SER 175 405 ? ? ? A . n A 1 176 CYS 176 406 ? ? ? A . n A 1 177 THR 177 407 ? ? ? A . n A 1 178 GLY 178 408 ? ? ? A . n A 1 179 SER 179 409 ? ? ? A . n A 1 180 SER 180 410 ? ? ? A . n A 1 181 THR 181 411 ? ? ? A . n A 1 182 SER 182 412 ? ? ? A . n A 1 183 GLY 183 413 ? ? ? A . n A 1 184 ARG 184 414 ? ? ? A . n A 1 185 GLY 185 415 ? ? ? A . n A 1 186 GLY 186 416 ? ? ? A . n A 1 187 CYS 187 417 ? ? ? A . n A 1 188 GLY 188 418 ? ? ? A . n A 1 189 GLY 189 419 ? ? ? A . n A 1 190 ASP 190 420 ? ? ? A . n A 1 191 ASP 191 421 ? ? ? A . n A 1 192 LEU 192 422 ? ? ? A . n A 1 193 ARG 193 423 ? ? ? A . n A 1 194 PHE 194 424 ? ? ? A . n B 2 1 DA 1 1 1 DA DA W . y B 2 1 DT 1 1 1 DT DT W . y B 2 2 DT 2 2 2 DT DT W . n B 2 3 DT 3 3 3 DT DT W . n B 2 4 DT 4 4 4 DT DT W . y B 2 4 DG 4 4 4 DG DG W . y B 2 5 DA 5 5 5 DA DA W . y B 2 5 DT 5 5 5 DT DT W . y B 2 6 DA 6 6 6 DA DA W . n B 2 7 DT 7 7 7 DT DT W . y B 2 7 DA 7 7 7 DA DA W . y B 2 8 DC 8 8 8 DC DC W . n B 2 9 DC 9 9 9 DC DC W . n B 2 10 DA 10 10 10 DA DA W . n B 2 11 DA 11 11 11 DA DA W . y B 2 11 DT 11 11 11 DT DT W . y B 2 12 DT 12 12 12 DT DT W . n B 2 13 DG 13 13 13 DG DG W . n B 2 14 DG 14 14 14 DG DG W . n B 2 15 DT 15 15 15 DT DT W . y B 2 15 DA 15 15 15 DA DA W . y B 2 16 DT 16 16 16 DT DT W . n B 2 17 DA 17 17 17 DA DA W . y B 2 17 DT 17 17 17 DT DT W . y B 2 18 DC 18 18 18 DC DC W . y B 2 18 DA 18 18 18 DA DA W . y B 2 19 DA 19 19 19 DA DA W . n B 2 20 DA 20 20 20 DA DA W . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . C 3 HOH 33 2033 2033 HOH HOH A . C 3 HOH 34 2034 2034 HOH HOH A . C 3 HOH 35 2035 2035 HOH HOH A . C 3 HOH 36 2036 2036 HOH HOH A . C 3 HOH 37 2037 2037 HOH HOH A . C 3 HOH 38 2038 2038 HOH HOH A . C 3 HOH 39 2039 2039 HOH HOH A . C 3 HOH 40 2040 2040 HOH HOH A . D 3 HOH 1 2001 2001 HOH HOH W . D 3 HOH 2 2002 2002 HOH HOH W . D 3 HOH 3 2003 2003 HOH HOH W . D 3 HOH 4 2004 2004 HOH HOH W . D 3 HOH 5 2005 2005 HOH HOH W . D 3 HOH 6 2006 2006 HOH HOH W . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6140 ? 1 MORE -31.0 ? 1 'SSA (A^2)' 22070 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-09-23 2 'Structure model' 1 1 2012-01-18 3 'Structure model' 1 2 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' Other 6 2 'Structure model' 'Refinement description' 7 2 'Structure model' 'Structure summary' 8 2 'Structure model' 'Version format compliance' 9 3 'Structure model' 'Data collection' 10 3 'Structure model' 'Database references' 11 3 'Structure model' Other 12 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_database_status 5 3 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 REFMAC phasing . ? 4 # _pdbx_entry_details.entry_id 2VY2 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;CHAIN W HAS MICROHETEROGENEITY AT POSITIONS 1(DA/DT), 4(DT/DG), 5(DA/DT), 7(DT/DA), 11(DA/DT), 15(DT/DA) 17(DA/DT), AND 18(DC/DA). ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OH _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 TYR _pdbx_validate_symm_contact.auth_seq_id_1 296 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OH _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 TYR _pdbx_validate_symm_contact.auth_seq_id_2 296 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 12_554 _pdbx_validate_symm_contact.dist 2.08 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" W DA 5 ? A "C2'" W DA 5 ? A "C1'" W DA 5 ? A 93.82 102.40 -8.58 0.80 N 2 1 "O4'" W DA 5 ? A "C1'" W DA 5 ? A N9 W DA 5 ? A 110.69 108.30 2.39 0.30 N 3 1 "O5'" W DT 12 ? ? "C5'" W DT 12 ? ? "C4'" W DT 12 ? ? 104.38 109.40 -5.02 0.80 N 4 1 "O4'" W DG 14 ? ? "C1'" W DG 14 ? ? N9 W DG 14 ? ? 111.44 108.30 3.14 0.30 N 5 1 "C3'" W DA 18 ? B "C2'" W DA 18 ? B "C1'" W DA 18 ? B 97.08 102.40 -5.32 0.80 N 6 1 "O4'" W DA 18 ? B "C1'" W DA 18 ? B N9 W DA 18 ? B 110.65 108.30 2.35 0.30 N 7 1 "O4'" W DA 19 ? ? "C1'" W DA 19 ? ? N9 W DA 19 ? ? 102.61 108.00 -5.39 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 323 ? ? -153.10 81.57 2 1 TRP A 361 ? ? 59.28 19.37 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A LYS 381 ? CD ? A LYS 151 CD 2 1 Y 0 A LYS 381 ? CE ? A LYS 151 CE 3 1 Y 0 A LYS 381 ? NZ ? A LYS 151 NZ 4 1 Y 1 W DA 1 ? "C3'" ? B DA 1 "C3'" 5 1 Y 1 W DA 1 ? "O3'" ? B DA 1 "O3'" 6 1 Y 1 W DA 1 ? "C2'" ? B DA 1 "C2'" # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU 231 ? A LEU 1 2 1 Y 1 A GLY 232 ? A GLY 2 3 1 Y 1 A THR 233 ? A THR 3 4 1 Y 1 A GLU 234 ? A GLU 4 5 1 Y 1 A ARG 235 ? A ARG 5 6 1 Y 1 A GLN 236 ? A GLN 6 7 1 Y 1 A LEU 400 ? A LEU 170 8 1 Y 1 A VAL 401 ? A VAL 171 9 1 Y 1 A GLY 402 ? A GLY 172 10 1 Y 1 A GLY 403 ? A GLY 173 11 1 Y 1 A ILE 404 ? A ILE 174 12 1 Y 1 A SER 405 ? A SER 175 13 1 Y 1 A CYS 406 ? A CYS 176 14 1 Y 1 A THR 407 ? A THR 177 15 1 Y 1 A GLY 408 ? A GLY 178 16 1 Y 1 A SER 409 ? A SER 179 17 1 Y 1 A SER 410 ? A SER 180 18 1 Y 1 A THR 411 ? A THR 181 19 1 Y 1 A SER 412 ? A SER 182 20 1 Y 1 A GLY 413 ? A GLY 183 21 1 Y 1 A ARG 414 ? A ARG 184 22 1 Y 1 A GLY 415 ? A GLY 185 23 1 Y 1 A GLY 416 ? A GLY 186 24 1 Y 1 A CYS 417 ? A CYS 187 25 1 Y 1 A GLY 418 ? A GLY 188 26 1 Y 1 A GLY 419 ? A GLY 189 27 1 Y 1 A ASP 420 ? A ASP 190 28 1 Y 1 A ASP 421 ? A ASP 191 29 1 Y 1 A LEU 422 ? A LEU 192 30 1 Y 1 A ARG 423 ? A ARG 193 31 1 Y 1 A PHE 424 ? A PHE 194 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 PHE N N N N 393 PHE CA C N S 394 PHE C C N N 395 PHE O O N N 396 PHE CB C N N 397 PHE CG C Y N 398 PHE CD1 C Y N 399 PHE CD2 C Y N 400 PHE CE1 C Y N 401 PHE CE2 C Y N 402 PHE CZ C Y N 403 PHE OXT O N N 404 PHE H H N N 405 PHE H2 H N N 406 PHE HA H N N 407 PHE HB2 H N N 408 PHE HB3 H N N 409 PHE HD1 H N N 410 PHE HD2 H N N 411 PHE HE1 H N N 412 PHE HE2 H N N 413 PHE HZ H N N 414 PHE HXT H N N 415 PRO N N N N 416 PRO CA C N S 417 PRO C C N N 418 PRO O O N N 419 PRO CB C N N 420 PRO CG C N N 421 PRO CD C N N 422 PRO OXT O N N 423 PRO H H N N 424 PRO HA H N N 425 PRO HB2 H N N 426 PRO HB3 H N N 427 PRO HG2 H N N 428 PRO HG3 H N N 429 PRO HD2 H N N 430 PRO HD3 H N N 431 PRO HXT H N N 432 SER N N N N 433 SER CA C N S 434 SER C C N N 435 SER O O N N 436 SER CB C N N 437 SER OG O N N 438 SER OXT O N N 439 SER H H N N 440 SER H2 H N N 441 SER HA H N N 442 SER HB2 H N N 443 SER HB3 H N N 444 SER HG H N N 445 SER HXT H N N 446 THR N N N N 447 THR CA C N S 448 THR C C N N 449 THR O O N N 450 THR CB C N R 451 THR OG1 O N N 452 THR CG2 C N N 453 THR OXT O N N 454 THR H H N N 455 THR H2 H N N 456 THR HA H N N 457 THR HB H N N 458 THR HG1 H N N 459 THR HG21 H N N 460 THR HG22 H N N 461 THR HG23 H N N 462 THR HXT H N N 463 TRP N N N N 464 TRP CA C N S 465 TRP C C N N 466 TRP O O N N 467 TRP CB C N N 468 TRP CG C Y N 469 TRP CD1 C Y N 470 TRP CD2 C Y N 471 TRP NE1 N Y N 472 TRP CE2 C Y N 473 TRP CE3 C Y N 474 TRP CZ2 C Y N 475 TRP CZ3 C Y N 476 TRP CH2 C Y N 477 TRP OXT O N N 478 TRP H H N N 479 TRP H2 H N N 480 TRP HA H N N 481 TRP HB2 H N N 482 TRP HB3 H N N 483 TRP HD1 H N N 484 TRP HE1 H N N 485 TRP HE3 H N N 486 TRP HZ2 H N N 487 TRP HZ3 H N N 488 TRP HH2 H N N 489 TRP HXT H N N 490 TYR N N N N 491 TYR CA C N S 492 TYR C C N N 493 TYR O O N N 494 TYR CB C N N 495 TYR CG C Y N 496 TYR CD1 C Y N 497 TYR CD2 C Y N 498 TYR CE1 C Y N 499 TYR CE2 C Y N 500 TYR CZ C Y N 501 TYR OH O N N 502 TYR OXT O N N 503 TYR H H N N 504 TYR H2 H N N 505 TYR HA H N N 506 TYR HB2 H N N 507 TYR HB3 H N N 508 TYR HD1 H N N 509 TYR HD2 H N N 510 TYR HE1 H N N 511 TYR HE2 H N N 512 TYR HH H N N 513 TYR HXT H N N 514 VAL N N N N 515 VAL CA C N S 516 VAL C C N N 517 VAL O O N N 518 VAL CB C N N 519 VAL CG1 C N N 520 VAL CG2 C N N 521 VAL OXT O N N 522 VAL H H N N 523 VAL H2 H N N 524 VAL HA H N N 525 VAL HB H N N 526 VAL HG11 H N N 527 VAL HG12 H N N 528 VAL HG13 H N N 529 VAL HG21 H N N 530 VAL HG22 H N N 531 VAL HG23 H N N 532 VAL HXT H N N 533 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 PHE N CA sing N N 386 PHE N H sing N N 387 PHE N H2 sing N N 388 PHE CA C sing N N 389 PHE CA CB sing N N 390 PHE CA HA sing N N 391 PHE C O doub N N 392 PHE C OXT sing N N 393 PHE CB CG sing N N 394 PHE CB HB2 sing N N 395 PHE CB HB3 sing N N 396 PHE CG CD1 doub Y N 397 PHE CG CD2 sing Y N 398 PHE CD1 CE1 sing Y N 399 PHE CD1 HD1 sing N N 400 PHE CD2 CE2 doub Y N 401 PHE CD2 HD2 sing N N 402 PHE CE1 CZ doub Y N 403 PHE CE1 HE1 sing N N 404 PHE CE2 CZ sing Y N 405 PHE CE2 HE2 sing N N 406 PHE CZ HZ sing N N 407 PHE OXT HXT sing N N 408 PRO N CA sing N N 409 PRO N CD sing N N 410 PRO N H sing N N 411 PRO CA C sing N N 412 PRO CA CB sing N N 413 PRO CA HA sing N N 414 PRO C O doub N N 415 PRO C OXT sing N N 416 PRO CB CG sing N N 417 PRO CB HB2 sing N N 418 PRO CB HB3 sing N N 419 PRO CG CD sing N N 420 PRO CG HG2 sing N N 421 PRO CG HG3 sing N N 422 PRO CD HD2 sing N N 423 PRO CD HD3 sing N N 424 PRO OXT HXT sing N N 425 SER N CA sing N N 426 SER N H sing N N 427 SER N H2 sing N N 428 SER CA C sing N N 429 SER CA CB sing N N 430 SER CA HA sing N N 431 SER C O doub N N 432 SER C OXT sing N N 433 SER CB OG sing N N 434 SER CB HB2 sing N N 435 SER CB HB3 sing N N 436 SER OG HG sing N N 437 SER OXT HXT sing N N 438 THR N CA sing N N 439 THR N H sing N N 440 THR N H2 sing N N 441 THR CA C sing N N 442 THR CA CB sing N N 443 THR CA HA sing N N 444 THR C O doub N N 445 THR C OXT sing N N 446 THR CB OG1 sing N N 447 THR CB CG2 sing N N 448 THR CB HB sing N N 449 THR OG1 HG1 sing N N 450 THR CG2 HG21 sing N N 451 THR CG2 HG22 sing N N 452 THR CG2 HG23 sing N N 453 THR OXT HXT sing N N 454 TRP N CA sing N N 455 TRP N H sing N N 456 TRP N H2 sing N N 457 TRP CA C sing N N 458 TRP CA CB sing N N 459 TRP CA HA sing N N 460 TRP C O doub N N 461 TRP C OXT sing N N 462 TRP CB CG sing N N 463 TRP CB HB2 sing N N 464 TRP CB HB3 sing N N 465 TRP CG CD1 doub Y N 466 TRP CG CD2 sing Y N 467 TRP CD1 NE1 sing Y N 468 TRP CD1 HD1 sing N N 469 TRP CD2 CE2 doub Y N 470 TRP CD2 CE3 sing Y N 471 TRP NE1 CE2 sing Y N 472 TRP NE1 HE1 sing N N 473 TRP CE2 CZ2 sing Y N 474 TRP CE3 CZ3 doub Y N 475 TRP CE3 HE3 sing N N 476 TRP CZ2 CH2 doub Y N 477 TRP CZ2 HZ2 sing N N 478 TRP CZ3 CH2 sing Y N 479 TRP CZ3 HZ3 sing N N 480 TRP CH2 HH2 sing N N 481 TRP OXT HXT sing N N 482 TYR N CA sing N N 483 TYR N H sing N N 484 TYR N H2 sing N N 485 TYR CA C sing N N 486 TYR CA CB sing N N 487 TYR CA HA sing N N 488 TYR C O doub N N 489 TYR C OXT sing N N 490 TYR CB CG sing N N 491 TYR CB HB2 sing N N 492 TYR CB HB3 sing N N 493 TYR CG CD1 doub Y N 494 TYR CG CD2 sing Y N 495 TYR CD1 CE1 sing Y N 496 TYR CD1 HD1 sing N N 497 TYR CD2 CE2 doub Y N 498 TYR CD2 HD2 sing N N 499 TYR CE1 CZ doub Y N 500 TYR CE1 HE1 sing N N 501 TYR CE2 CZ sing Y N 502 TYR CE2 HE2 sing N N 503 TYR CZ OH sing N N 504 TYR OH HH sing N N 505 TYR OXT HXT sing N N 506 VAL N CA sing N N 507 VAL N H sing N N 508 VAL N H2 sing N N 509 VAL CA C sing N N 510 VAL CA CB sing N N 511 VAL CA HA sing N N 512 VAL C O doub N N 513 VAL C OXT sing N N 514 VAL CB CG1 sing N N 515 VAL CB CG2 sing N N 516 VAL CB HB sing N N 517 VAL CG1 HG11 sing N N 518 VAL CG1 HG12 sing N N 519 VAL CG1 HG13 sing N N 520 VAL CG2 HG21 sing N N 521 VAL CG2 HG22 sing N N 522 VAL CG2 HG23 sing N N 523 VAL OXT HXT sing N N 524 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2VY2 'double helix' 2VY2 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DT 2 1_555 B DA 20 8_555 -0.280 -0.163 -0.015 -4.472 -11.513 0.364 1 W_DT2:DA20_W W 2 ? W 20 ? 20 1 1 B DT 3 1_555 B DA 19 8_555 -0.122 -0.095 -0.052 -4.446 -10.472 0.491 2 W_DT3:DA19_W W 3 ? W 19 ? 20 1 1 B DT 4 1_555 B DC 18 8_555 -0.276 -0.566 0.069 1.029 -14.309 1.452 3 W_DT4:DC18_W W 4 ? W 18 ? ? ? 1 B DA 5 1_555 B DA 17 8_555 -0.267 0.879 0.028 5.255 -4.277 -3.584 4 W_DA5:DA17_W W 5 ? W 17 ? 1 1 1 B DA 6 1_555 B DT 16 8_555 0.014 -0.290 0.040 3.521 -19.039 -3.275 5 W_DA6:DT16_W W 6 ? W 16 ? 20 1 1 B DC 8 1_555 B DG 14 8_555 0.035 -0.034 -0.156 7.196 -11.812 0.774 6 W_DC8:DG14_W W 8 ? W 14 ? 19 1 1 B DC 9 1_555 B DG 13 8_555 0.209 -0.281 -0.035 -1.254 -1.896 -1.552 7 W_DC9:DG13_W W 9 ? W 13 ? 19 1 1 B DA 10 1_555 B DT 12 8_555 0.077 -0.116 0.180 6.484 -14.428 -0.779 8 W_DA10:DT12_W W 10 ? W 12 ? 20 1 1 B DA 11 1_555 B DA 11 8_555 0.000 0.830 -0.326 0.000 -16.125 0.246 9 W_DA11:DA11_W W 11 ? W 11 ? 1 1 1 B DT 12 1_555 B DA 10 8_555 -0.077 -0.116 0.180 -6.484 -14.428 -0.779 10 W_DT12:DA10_W W 12 ? W 10 ? 20 1 1 B DG 13 1_555 B DC 9 8_555 -0.209 -0.281 -0.035 1.254 -1.896 -1.552 11 W_DG13:DC9_W W 13 ? W 9 ? 19 1 1 B DG 14 1_555 B DC 8 8_555 -0.035 -0.034 -0.156 -7.196 -11.812 0.774 12 W_DG14:DC8_W W 14 ? W 8 ? 19 1 1 B DT 16 1_555 B DA 6 8_555 -0.014 -0.290 0.040 -3.521 -19.039 -3.275 13 W_DT16:DA6_W W 16 ? W 6 ? 20 1 1 B DA 17 1_555 B DA 5 8_555 0.267 0.879 0.028 -5.255 -4.277 -3.584 14 W_DA17:DA5_W W 17 ? W 5 ? 1 1 1 B DC 18 1_555 B DT 4 8_555 0.276 -0.566 0.069 -1.029 -14.309 1.452 15 W_DC18:DT4_W W 18 ? W 4 ? ? ? 1 B DA 19 1_555 B DT 3 8_555 0.122 -0.095 -0.052 4.446 -10.472 0.491 16 W_DA19:DT3_W W 19 ? W 3 ? 20 1 1 B DA 20 1_555 B DT 2 8_555 0.280 -0.163 -0.015 4.472 -11.513 0.364 17 W_DA20:DT2_W W 20 ? W 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DT 2 1_555 B DA 20 8_555 B DT 3 1_555 B DA 19 8_555 0.370 -0.134 3.346 1.737 3.274 33.115 -0.792 -0.350 3.332 5.721 -3.035 33.316 1 WW_DT2DT3:DA19DA20_WW W 2 ? W 20 ? W 3 ? W 19 ? 1 B DT 3 1_555 B DA 19 8_555 B DT 4 1_555 B DC 18 8_555 0.266 -0.329 3.200 0.534 -3.133 35.986 -0.096 -0.355 3.220 -5.059 -0.862 36.122 2 WW_DT3DT4:DC18DA19_WW W 3 ? W 19 ? W 4 ? W 18 ? 1 B DT 4 1_555 B DC 18 8_555 B DA 5 1_555 B DA 17 8_555 -0.200 -0.559 3.376 1.474 1.658 30.328 -1.406 0.683 3.328 3.164 -2.812 30.407 3 WW_DT4DA5:DA17DC18_WW W 4 ? W 18 ? W 5 ? W 17 ? 1 B DA 5 1_555 B DA 17 8_555 B DA 6 1_555 B DT 16 8_555 -0.696 0.431 3.343 -1.231 -7.568 42.492 1.341 0.824 3.242 -10.341 1.682 43.147 4 WW_DA5DA6:DT16DA17_WW W 5 ? W 17 ? W 6 ? W 16 ? 1 B DA 6 1_555 B DT 16 8_555 B DC 8 1_555 B DG 14 8_555 0.724 -0.850 6.696 -2.544 -7.849 69.562 -0.166 -0.818 6.721 -6.855 2.222 69.988 5 WW_DA6DC8:DG14DT16_WW W 6 ? W 16 ? W 8 ? W 14 ? 1 B DC 8 1_555 B DG 14 8_555 B DC 9 1_555 B DG 13 8_555 -0.709 -0.565 3.595 -0.349 6.424 31.551 -2.262 1.212 3.424 11.662 0.633 32.184 6 WW_DC8DC9:DG13DG14_WW W 8 ? W 14 ? W 9 ? W 13 ? 1 B DC 9 1_555 B DG 13 8_555 B DA 10 1_555 B DT 12 8_555 -0.165 1.355 3.248 -1.749 2.105 37.154 1.841 0.026 3.322 3.298 2.740 37.252 7 WW_DC9DA10:DT12DG13_WW W 9 ? W 13 ? W 10 ? W 12 ? 1 B DA 10 1_555 B DT 12 8_555 B DA 11 1_555 B DA 11 8_555 0.312 -0.427 3.526 3.886 -2.102 36.034 -0.366 0.089 3.557 -3.382 -6.254 36.294 8 WW_DA10DA11:DA11DT12_WW W 10 ? W 12 ? W 11 ? W 11 ? 1 B DA 11 1_555 B DA 11 8_555 B DT 12 1_555 B DA 10 8_555 -0.312 -0.427 3.526 -3.886 -2.102 36.034 -0.366 -0.089 3.557 -3.382 6.254 36.294 9 WW_DA11DT12:DA10DA11_WW W 11 ? W 11 ? W 12 ? W 10 ? 1 B DT 12 1_555 B DA 10 8_555 B DG 13 1_555 B DC 9 8_555 0.165 1.355 3.248 1.749 2.105 37.154 1.841 -0.026 3.322 3.298 -2.740 37.252 10 WW_DT12DG13:DC9DA10_WW W 12 ? W 10 ? W 13 ? W 9 ? 1 B DG 13 1_555 B DC 9 8_555 B DG 14 1_555 B DC 8 8_555 0.709 -0.565 3.595 0.349 6.424 31.551 -2.262 -1.212 3.424 11.662 -0.633 32.184 11 WW_DG13DG14:DC8DC9_WW W 13 ? W 9 ? W 14 ? W 8 ? 1 B DG 14 1_555 B DC 8 8_555 B DT 16 1_555 B DA 6 8_555 -0.724 -0.850 6.696 2.544 -7.849 69.562 -0.166 0.818 6.721 -6.855 -2.222 69.988 12 WW_DG14DT16:DA6DC8_WW W 14 ? W 8 ? W 16 ? W 6 ? 1 B DT 16 1_555 B DA 6 8_555 B DA 17 1_555 B DA 5 8_555 0.696 0.431 3.343 1.231 -7.568 42.492 1.341 -0.824 3.242 -10.341 -1.682 43.147 13 WW_DT16DA17:DA5DA6_WW W 16 ? W 6 ? W 17 ? W 5 ? 1 B DA 17 1_555 B DA 5 8_555 B DC 18 1_555 B DT 4 8_555 0.200 -0.559 3.376 -1.474 1.658 30.328 -1.406 -0.683 3.328 3.164 2.812 30.407 14 WW_DA17DC18:DT4DA5_WW W 17 ? W 5 ? W 18 ? W 4 ? 1 B DC 18 1_555 B DT 4 8_555 B DA 19 1_555 B DT 3 8_555 -0.266 -0.329 3.200 -0.534 -3.133 35.986 -0.096 0.355 3.220 -5.059 0.862 36.122 15 WW_DC18DA19:DT3DT4_WW W 18 ? W 4 ? W 19 ? W 3 ? 1 B DA 19 1_555 B DT 3 8_555 B DA 20 1_555 B DT 2 8_555 -0.370 -0.134 3.346 -1.737 3.274 33.115 -0.792 0.350 3.332 5.721 3.035 33.316 16 WW_DA19DA20:DT2DT3_WW W 19 ? W 3 ? W 20 ? W 2 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2VY1 _pdbx_initial_refinement_model.details 'PDB ENTRY 2VY1' #