HEADER SPLICING 17-JUL-08 2VY4 TITLE U11-48K CHHC ZN-FINGER DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 48 KDA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 53-87; COMPND 5 SYNONYM: U11/U12 SNRNP 48 KDA PROTEIN, U11/U12-48K, U11-48K CHHC ZN- COMPND 6 FINGER; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PRSET KEYWDS SPLICING, MRNA PROCESSING, ALTERNATIVE SPLICING, TRANSCRIPTION, KEYWDS 2 NUCLEUS, SPLICEOSOME, POLYMORPHISM, MRNA SPLICING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.TIDOW,A.ANDREEVA,T.J.RUTHERFORD,A.R.FERSHT REVDAT 5 15-MAY-24 2VY4 1 REMARK LINK REVDAT 4 02-MAY-18 2VY4 1 JRNL REMARK REVDAT 3 24-JAN-18 2VY4 1 SOURCE REVDAT 2 18-APR-12 2VY4 1 JRNL REMARK VERSN SITE REVDAT 2 2 1 MASTER REVDAT 1 17-FEB-09 2VY4 0 JRNL AUTH H.TIDOW,A.ANDREEVA,T.J.RUTHERFORD,A.R.FERSHT JRNL TITL SOLUTION STRUCTURE OF THE U11-48K CHHC ZINC-FINGER DOMAIN JRNL TITL 2 THAT SPECIFICALLY BINDS THE 5' SPLICE SITE OF U12-TYPE JRNL TITL 3 INTRONS. JRNL REF STRUCTURE V. 17 294 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19217400 JRNL DOI 10.1016/J.STR.2008.11.013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DETAILS CAN BE FOUND IN CITATION ABOVE REMARK 4 REMARK 4 2VY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1290036933. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 7.2 REMARK 210 IONIC STRENGTH : 213 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 25MM PHOSPHATE, PH7.2, 150MM REMARK 210 NACL, 5MM DTT, 5%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; COSY; TOCSY; HNCACB; CBCA REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY, NO VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: ASSIGNMENT USING TRIPLE-RESONANCE NMR SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS A 74 H CYS A 78 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 62 -44.81 86.75 REMARK 500 1 ASN A 63 40.73 -97.63 REMARK 500 1 SER A 70 17.53 -146.89 REMARK 500 1 TYR A 85 77.22 -161.04 REMARK 500 2 SER A 62 -44.49 85.98 REMARK 500 2 ASN A 63 39.95 -95.73 REMARK 500 2 MET A 83 -175.85 60.28 REMARK 500 3 ASP A 53 66.39 -113.91 REMARK 500 3 SER A 62 -46.15 86.02 REMARK 500 3 ASN A 63 41.24 -96.14 REMARK 500 3 TYR A 85 31.54 -98.65 REMARK 500 4 ASP A 53 31.29 -98.86 REMARK 500 4 ASP A 61 109.49 60.44 REMARK 500 4 SER A 62 33.68 -179.99 REMARK 500 4 SER A 70 16.33 -147.95 REMARK 500 4 TYR A 85 104.67 61.05 REMARK 500 5 ASP A 61 95.60 74.21 REMARK 500 5 SER A 62 31.06 173.88 REMARK 500 5 ASN A 63 70.03 34.48 REMARK 500 5 TYR A 85 158.28 61.95 REMARK 500 5 THR A 86 -62.77 -105.83 REMARK 500 6 SER A 62 -46.74 87.07 REMARK 500 6 ASN A 63 41.25 -96.96 REMARK 500 6 TYR A 85 174.44 60.86 REMARK 500 6 THR A 86 155.15 64.03 REMARK 500 7 SER A 52 91.83 -175.70 REMARK 500 7 ASP A 61 110.64 58.42 REMARK 500 7 SER A 62 33.73 178.65 REMARK 500 7 SER A 70 15.71 -142.02 REMARK 500 7 SER A 77 -50.49 -120.06 REMARK 500 7 MET A 83 149.79 62.49 REMARK 500 7 THR A 86 153.75 61.58 REMARK 500 8 ASP A 61 90.33 83.49 REMARK 500 8 SER A 62 138.14 160.91 REMARK 500 8 ASN A 63 66.67 -67.95 REMARK 500 8 SER A 70 15.05 -146.60 REMARK 500 8 MET A 83 161.46 62.10 REMARK 500 9 SER A 52 141.37 63.30 REMARK 500 9 ASP A 53 -66.36 -150.74 REMARK 500 9 SER A 62 -51.40 83.08 REMARK 500 9 ASN A 63 42.26 -95.00 REMARK 500 9 MET A 83 112.74 61.53 REMARK 500 10 SER A 62 -47.47 86.20 REMARK 500 10 ASN A 63 41.10 -95.77 REMARK 500 10 SER A 70 14.43 -141.60 REMARK 500 10 THR A 86 -47.17 -136.77 REMARK 500 11 PRO A 59 33.97 -87.69 REMARK 500 11 ASN A 63 35.19 -167.23 REMARK 500 11 TYR A 85 161.31 59.84 REMARK 500 12 ASP A 53 -69.69 -149.88 REMARK 500 REMARK 500 THIS ENTRY HAS 90 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1088 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 58 SG REMARK 620 2 HIS A 64 ND1 109.3 REMARK 620 3 HIS A 74 ND1 111.4 123.3 REMARK 620 4 CYS A 78 SG 99.8 98.8 110.9 REMARK 620 N 1 2 3 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1088 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VY5 RELATED DB: PDB REMARK 900 STRUCTURE OF A SPLICEOSOMAL PROTEIN DBREF 2VY4 A 51 52 PDB 2VY4 2VY4 51 52 DBREF 2VY4 A 53 87 UNP Q6IEG0 CF151_HUMAN 53 87 SEQRES 1 A 37 GLY SER ASP GLU VAL VAL ILE CYS PRO TYR ASP SER ASN SEQRES 2 A 37 HIS HIS MET PRO LYS SER SER LEU ALA LYS HIS MET ALA SEQRES 3 A 37 SER CYS ARG LEU ARG LYS MET GLY TYR THR LYS HET ZN A1088 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 LEU A 71 LYS A 82 1 12 SHEET 1 AA 2 VAL A 56 CYS A 58 0 SHEET 2 AA 2 ASN A 63 MET A 66 -1 O MET A 66 N VAL A 56 LINK SG CYS A 58 ZN ZN A1088 1555 1555 2.35 LINK ND1 HIS A 64 ZN ZN A1088 1555 1555 2.03 LINK ND1 HIS A 74 ZN ZN A1088 1555 1555 2.03 LINK SG CYS A 78 ZN ZN A1088 1555 1555 2.34 SITE 1 AC1 5 CYS A 58 HIS A 64 MET A 66 HIS A 74 SITE 2 AC1 5 CYS A 78 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1