HEADER HYDROLASE 25-JUL-08 2VYO TITLE CHITIN DEACETYLASE FAMILY MEMBER FROM ENCEPHALITOZOON CUNICULI COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYSACCHARIDE DEACETYLASE DOMAIN-CONTAINING PROTEIN COMPND 3 ECU11_0510; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: CHITOOLIGOSACCHARIDE DEACETYLASE, ECU11_0510; COMPND 6 EC: 3.5.1.41; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: MATURE PROTEIN. PUTATIVE SIGNAL PEPTIDE REMOVED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENCEPHALITOZOON CUNICULI; SOURCE 3 ORGANISM_TAXID: 284813; SOURCE 4 STRAIN: GB-M1; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PPICZALPHA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PPICZALPHA ECU11_0150 KEYWDS HYDROLASE, CE4 ESTERASE, NATIVE PROTEIN, MICROSPORIDIAN, INACTIVE, KEYWDS 2 CUNICULI EXPDTA X-RAY DIFFRACTION AUTHOR J.E.URCH,R.HURTADO-GUERRERO,C.TEXIER,D.M.F.VAN AALTEN REVDAT 5 13-DEC-23 2VYO 1 REMARK LINK REVDAT 4 15-MAY-19 2VYO 1 REMARK REVDAT 3 29-AUG-12 2VYO 1 COMPND KEYWDS AUTHOR JRNL REVDAT 3 2 1 REMARK VERSN FORMUL REVDAT 2 24-FEB-09 2VYO 1 VERSN REVDAT 1 12-AUG-08 2VYO 0 JRNL AUTH J.E.URCH,R.HURTADO-GUERRERO,D.BROSSON,Z.LIU,V.G.H.EIJSINK, JRNL AUTH 2 C.TEXIER,D.M.F.VAN AALTEN JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A PUTATIVE JRNL TITL 2 POLYSACCHARIDE DEACETYLASE OF THE HUMAN PARASITE JRNL TITL 3 ENCEPHALITOZOON CUNICULI. JRNL REF PROTEIN SCI. V. 18 1197 2009 JRNL REFN ISSN 0961-8368 JRNL PMID 19472335 JRNL DOI 10.1002/PRO.128 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 33245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 703 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2262 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1599 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 154 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38000 REMARK 3 B22 (A**2) : 2.24000 REMARK 3 B33 (A**2) : -0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.532 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1628 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2203 ; 1.380 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 207 ; 5.498 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;32.799 ;25.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 268 ;11.396 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;14.502 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 244 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1259 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 793 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1149 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 121 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.311 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 29 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1056 ; 0.926 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1657 ; 1.428 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 636 ; 2.230 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 545 ; 3.322 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUL-08. REMARK 100 THE DEPOSITION ID IS D_1290036936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 190 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : TOROIDAL ZERODUR MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33981 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2C1G REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 100 MM IMIDAZOLE 200 MM REMARK 280 CALCIUM ACETATE 10MM ZNCL 20C, PH 8.0, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.95800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.48750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.95800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2057 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 LEU A 3 REMARK 465 CYS A 4 REMARK 465 LEU A 5 REMARK 465 LEU A 6 REMARK 465 TYR A 7 REMARK 465 PHE A 8 REMARK 465 THR A 9 REMARK 465 SER A 10 REMARK 465 SER A 11 REMARK 465 TRP A 12 REMARK 465 CYS A 13 REMARK 465 SER A 14 REMARK 465 GLY A 221 REMARK 465 ALA A 222 REMARK 465 PRO A 223 REMARK 465 GLY A 224 REMARK 465 ASP A 225 REMARK 465 PRO A 226 REMARK 465 GLU A 227 REMARK 465 LEU A 228 REMARK 465 SER A 229 REMARK 465 LEU A 230 REMARK 465 ARG A 231 REMARK 465 GLY A 232 REMARK 465 LYS A 233 REMARK 465 GLY A 234 REMARK 465 VAL A 235 REMARK 465 GLU A 236 REMARK 465 SER A 237 REMARK 465 ILE A 238 REMARK 465 GLY A 239 REMARK 465 LYS A 240 REMARK 465 GLY A 241 REMARK 465 PHE A 242 REMARK 465 LEU A 243 REMARK 465 PRO A 244 REMARK 465 PHE A 245 REMARK 465 PHE A 246 REMARK 465 LEU A 247 REMARK 465 MET A 248 REMARK 465 MET A 249 REMARK 465 LEU A 250 REMARK 465 VAL A 251 REMARK 465 ARG A 252 REMARK 465 LEU A 253 REMARK 465 LEU A 254 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 15 CD OE1 OE2 REMARK 480 GLN A 63 OE1 NE2 REMARK 480 LYS A 64 CD CE NZ REMARK 480 LEU A 98 CD1 CD2 REMARK 480 GLN A 100 CG CD OE1 NE2 REMARK 480 ARG A 123 NE CZ NH1 NH2 REMARK 480 GLU A 137 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 155 O HOH A 2150 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 63 CD GLN A 63 OE1 0.489 REMARK 500 GLN A 63 CD GLN A 63 OE1 0.362 REMARK 500 GLN A 63 CD GLN A 63 NE2 -0.261 REMARK 500 GLN A 63 CD GLN A 63 NE2 -0.533 REMARK 500 ARG A 123 CD ARG A 123 NE -0.509 REMARK 500 GLU A 137 CD GLU A 137 OE2 -0.155 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 63 OE1 - CD - NE2 ANGL. DEV. = -16.7 DEGREES REMARK 500 GLN A 63 OE1 - CD - NE2 ANGL. DEV. = 15.8 DEGREES REMARK 500 GLN A 63 CG - CD - OE1 ANGL. DEV. = -20.0 DEGREES REMARK 500 GLN A 63 CG - CD - OE1 ANGL. DEV. = -37.4 DEGREES REMARK 500 GLN A 63 CG - CD - NE2 ANGL. DEV. = 32.7 DEGREES REMARK 500 ARG A 123 CG - CD - NE ANGL. DEV. = 21.8 DEGREES REMARK 500 GLU A 137 OE1 - CD - OE2 ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 7.08 85.36 REMARK 500 ASP A 88 101.66 -22.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN A 63 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1221 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 25 OG REMARK 620 2 GLU A 104 OE2 145.0 REMARK 620 3 GLU A 144 OE2 79.9 78.8 REMARK 620 4 LYS A 176 O 76.9 128.3 85.5 REMARK 620 5 HOH A2007 O 82.0 111.0 158.7 101.3 REMARK 620 6 HOH A2062 O 72.4 76.8 80.3 148.0 83.5 REMARK 620 7 HOH A2105 O 142.6 72.3 116.7 71.8 84.6 140.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1222 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 49 OD2 REMARK 620 2 ASP A 108 OD2 167.8 REMARK 620 3 ASP A 112 OD2 100.2 91.8 REMARK 620 4 ACT A1226 O 90.5 86.1 94.1 REMARK 620 5 HOH A2046 O 93.4 75.2 163.9 94.5 REMARK 620 6 HOH A2071 O 84.9 100.0 79.1 171.0 93.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1225 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 49 OD1 REMARK 620 2 ACT A1226 O 84.7 REMARK 620 3 ACT A1226 OXT 130.0 49.8 REMARK 620 4 CL A1227 CL 88.2 82.8 102.9 REMARK 620 5 HOH A2023 O 71.3 154.6 155.5 88.2 REMARK 620 6 HOH A2048 O 88.3 102.2 83.4 173.6 85.6 REMARK 620 7 HOH A2152 O 149.0 125.2 80.8 87.8 77.9 92.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1228 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 78 OE2 REMARK 620 2 GLU A 78 OE1 50.8 REMARK 620 3 ASP A 101 OD1 79.2 129.2 REMARK 620 4 HOH A2061 O 101.1 97.3 82.7 REMARK 620 5 HOH A2063 O 155.9 145.2 84.7 94.5 REMARK 620 6 HOH A2064 O 84.1 79.9 106.0 170.6 83.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1224 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 93 OE1 REMARK 620 2 CYS A 97 SG 132.5 REMARK 620 3 HIS A 185 NE2 105.0 105.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1223 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 130 SG REMARK 620 2 CYS A 130 SG 108.2 REMARK 620 N 1 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1224 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 1229 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1230 DBREF 2VYO A 1 254 UNP Q8SU65 Q8SU65_ENCCU 1 254 SEQADV 2VYO GLU A 15 UNP Q8SU65 GLY 15 CONFLICT SEQADV 2VYO ALA A 16 UNP Q8SU65 SER 16 CONFLICT SEQRES 1 A 254 MET LEU LEU CYS LEU LEU TYR PHE THR SER SER TRP CYS SEQRES 2 A 254 SER GLU ALA ASP VAL PRO ASP VAL CYS THR ASN SER GLY SEQRES 3 A 254 MET ILE ALA ILE ASN PHE VAL ASP GLY PRO VAL ARG GLY SEQRES 4 A 254 VAL THR ASP ARG ILE LEU ASN THR LEU ASP GLU LEU GLY SEQRES 5 A 254 VAL LYS ALA THR PHE SER PHE THR VAL ASN GLN LYS ALA SEQRES 6 A 254 VAL GLY ASN VAL GLY GLN LEU TYR ARG ARG ALA VAL GLU SEQRES 7 A 254 GLU GLY HIS ASN VAL ALA LEU ARG VAL ASP PRO SER MET SEQRES 8 A 254 ASP GLU GLY TYR GLN CYS LEU SER GLN ASP ALA LEU GLU SEQRES 9 A 254 ASN ASN VAL ASP ARG GLU ILE ASP THR ILE ASP GLY LEU SEQRES 10 A 254 SER GLY THR GLU ILE ARG TYR ALA ALA VAL PRO ILE CYS SEQRES 11 A 254 ASN GLY GLN VAL ASN SER GLU MET TYR ASN ILE LEU THR SEQRES 12 A 254 GLU ARG GLY VAL LEU PRO VAL GLY TYR THR PHE CYS PRO SEQRES 13 A 254 TYR ASP TYR ASP ASP PRO VAL GLY GLU PHE GLU SER MET SEQRES 14 A 254 ILE GLU GLY SER ASP PRO LYS HIS HIS SER PHE ILE ILE SEQRES 15 A 254 LEU MET HIS ASP GLY GLN GLU ALA ASP THR SER ARG LEU SEQRES 16 A 254 GLU ASN MET VAL LYS ILE GLY LYS ASP LYS GLY TYR ARG SEQRES 17 A 254 PHE VAL ASN MET ASP GLU CYS LEU GLN GLY TYR LYS GLY SEQRES 18 A 254 ALA PRO GLY ASP PRO GLU LEU SER LEU ARG GLY LYS GLY SEQRES 19 A 254 VAL GLU SER ILE GLY LYS GLY PHE LEU PRO PHE PHE LEU SEQRES 20 A 254 MET MET LEU VAL ARG LEU LEU HET CA A1221 1 HET CA A1222 1 HET ZN A1223 1 HET ZN A1224 1 HET CA A1225 1 HET ACT A1226 4 HET CL A1227 1 HET CA A1228 1 HET IMD A1229 5 HET EDO A1230 4 HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM IMD IMIDAZOLE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA 4(CA 2+) FORMUL 4 ZN 2(ZN 2+) FORMUL 7 ACT C2 H3 O2 1- FORMUL 8 CL CL 1- FORMUL 10 IMD C3 H5 N2 1+ FORMUL 11 EDO C2 H6 O2 FORMUL 12 HOH *154(H2 O) HELIX 1 1 GLY A 39 GLY A 52 1 14 HELIX 2 2 VAL A 66 VAL A 69 5 4 HELIX 3 3 GLY A 70 GLU A 79 1 10 HELIX 4 4 ASP A 88 ASP A 92 5 5 HELIX 5 5 GLY A 94 LEU A 98 5 5 HELIX 6 6 SER A 99 GLY A 119 1 21 HELIX 7 7 ASN A 135 GLU A 144 1 10 HELIX 8 8 CYS A 155 TYR A 159 5 5 HELIX 9 9 ASP A 161 GLY A 172 1 12 HELIX 10 10 GLY A 187 ALA A 190 5 4 HELIX 11 11 THR A 192 GLY A 206 1 15 HELIX 12 12 ASN A 211 LEU A 216 1 6 SHEET 1 AA 2 ALA A 16 ASP A 17 0 SHEET 2 AA 2 GLN A 133 VAL A 134 -1 O VAL A 134 N ALA A 16 SHEET 1 AB 6 LEU A 148 PRO A 149 0 SHEET 2 AB 6 TYR A 124 ALA A 126 1 N ALA A 125 O LEU A 148 SHEET 3 AB 6 ASN A 82 ARG A 86 1 O LEU A 85 N ALA A 126 SHEET 4 AB 6 THR A 56 PHE A 59 1 O PHE A 57 N ALA A 84 SHEET 5 AB 6 MET A 27 VAL A 33 1 O ILE A 30 N THR A 56 SHEET 6 AB 6 ARG A 208 PHE A 209 1 O ARG A 208 N ILE A 28 SHEET 1 AC 6 LEU A 148 PRO A 149 0 SHEET 2 AC 6 TYR A 124 ALA A 126 1 N ALA A 125 O LEU A 148 SHEET 3 AC 6 ASN A 82 ARG A 86 1 O LEU A 85 N ALA A 126 SHEET 4 AC 6 THR A 56 PHE A 59 1 O PHE A 57 N ALA A 84 SHEET 5 AC 6 MET A 27 VAL A 33 1 O ILE A 30 N THR A 56 SHEET 6 AC 6 PHE A 180 HIS A 185 1 O PHE A 180 N ALA A 29 SSBOND 1 CYS A 22 CYS A 215 1555 1555 2.07 LINK OG SER A 25 CA CA A1221 1555 1555 2.45 LINK OD2 ASP A 49 CA CA A1222 1555 1555 2.40 LINK OD1 ASP A 49 CA CA A1225 1555 1555 2.40 LINK OE2 GLU A 78 CA CA A1228 4457 1555 2.47 LINK OE1 GLU A 78 CA CA A1228 4457 1555 2.65 LINK OE1 GLU A 93 ZN ZN A1224 2655 1555 2.15 LINK SG CYS A 97 ZN ZN A1224 2655 1555 2.00 LINK OD1 ASP A 101 CA CA A1228 1555 1555 2.12 LINK OE2 GLU A 104 CA CA A1221 4556 1555 2.36 LINK OD2 ASP A 108 CA CA A1222 4557 1555 2.37 LINK OD2 ASP A 112 CA CA A1222 4557 1555 2.33 LINK SG CYS A 130 ZN ZN A1223 1555 1555 2.38 LINK SG CYS A 130 ZN ZN A1223 2655 1555 2.23 LINK OE2 GLU A 144 CA CA A1221 4556 1555 2.38 LINK O LYS A 176 CA CA A1221 1555 1555 2.33 LINK NE2 HIS A 185 ZN ZN A1224 1555 1555 2.13 LINK CA CA A1221 O HOH A2007 1555 1555 2.35 LINK CA CA A1221 O HOH A2062 1555 4556 2.47 LINK CA CA A1221 O HOH A2105 1555 1555 2.49 LINK CA CA A1222 O ACT A1226 1555 1555 2.38 LINK CA CA A1222 O HOH A2046 1555 1555 2.44 LINK CA CA A1222 O HOH A2071 1555 4557 2.38 LINK CA CA A1225 O ACT A1226 1555 1555 2.57 LINK CA CA A1225 OXT ACT A1226 1555 1555 2.50 LINK CA CA A1225 CL CL A1227 1555 1555 2.34 LINK CA CA A1225 O HOH A2023 1555 1555 2.66 LINK CA CA A1225 O HOH A2048 1555 1555 2.40 LINK CA CA A1225 O HOH A2152 1555 1555 2.47 LINK CA CA A1228 O HOH A2061 1555 1555 2.59 LINK CA CA A1228 O HOH A2063 1555 1555 2.22 LINK CA CA A1228 O HOH A2064 1555 1555 2.26 CISPEP 1 GLY A 35 PRO A 36 0 2.68 SITE 1 AC1 7 SER A 25 GLU A 104 GLU A 144 LYS A 176 SITE 2 AC1 7 HOH A2007 HOH A2062 HOH A2105 SITE 1 AC2 6 ASP A 49 ASP A 108 ASP A 112 ACT A1226 SITE 2 AC2 6 HOH A2046 HOH A2071 SITE 1 AC3 1 CYS A 130 SITE 1 AC4 4 GLU A 93 CYS A 97 HIS A 185 HOH A2151 SITE 1 AC5 6 ASP A 49 ACT A1226 CL A1227 HOH A2023 SITE 2 AC5 6 HOH A2048 HOH A2152 SITE 1 AC6 8 ASP A 49 ASP A 108 ARG A 109 ASP A 112 SITE 2 AC6 8 CA A1222 CA A1225 CL A1227 HOH A2153 SITE 1 AC7 5 ASP A 49 ASP A 112 CA A1225 ACT A1226 SITE 2 AC7 5 HOH A2067 SITE 1 AC8 5 GLU A 78 ASP A 101 HOH A2061 HOH A2063 SITE 2 AC8 5 HOH A2064 SITE 1 AC9 6 ILE A 111 ASP A 115 ILE A 122 ARG A 145 SITE 2 AC9 6 VAL A 147 HOH A2092 SITE 1 BC1 5 GLU A 167 GLU A 171 ILE A 201 HOH A2129 SITE 2 BC1 5 HOH A2154 CRYST1 64.975 81.916 39.201 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012208 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025510 0.00000