HEADER LYASE 27-OCT-08 2W2A TITLE CRYSTAL STRUCTURE OF P-COUMARIC ACID DECARBOXYLASE FROM LACTOBACILLUS TITLE 2 PLANTARUM: STRUCTURAL INSIGHTS INTO THE ACTIVE SITE AND TITLE 3 DECARBOXYLATION CATALYTIC MECHANISM COMPND MOL_ID: 1; COMPND 2 MOLECULE: P-COUMARIC ACID DECARBOXYLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PLANTARUM; SOURCE 3 ORGANISM_TAXID: 1590; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109(DE3) KEYWDS LYASE, ACTIVE SITE, COUMARIC ACIDS, DECARBOXYLATION, CATALYTIC KEYWDS 2 MECHANISM EXPDTA X-RAY DIFFRACTION AUTHOR H.RODRIGUEZ,I.ANGULO,B.DE LAS RIVAS,N.CAMPILLO,J.A.PAEZ,R.MUNOZ, AUTHOR 2 J.M.MANCHENO REVDAT 5 13-DEC-23 2W2A 1 REMARK REVDAT 4 09-NOV-11 2W2A 1 JRNL REMARK HELIX REVDAT 3 13-JUL-11 2W2A 1 VERSN REVDAT 2 09-FEB-10 2W2A 1 AUTHOR JRNL REMARK REVDAT 1 17-NOV-09 2W2A 0 JRNL AUTH H.RODRIGUEZ,I.ANGULO,B.DE LAS RIVAS,N.CAMPILLO,J.A.PAEZ, JRNL AUTH 2 R.MUNOZ,J.M.MANCHENO JRNL TITL P-COUMARIC ACID DECARBOXYLASE FROM LACTOBACILLUS PLANTARUM: JRNL TITL 2 STRUCTURAL INSIGHTS INTO THE ACTIVE SITE AND DECARBOXYLATION JRNL TITL 3 CATALYTIC MECHANISM. JRNL REF PROTEINS V. 78 1662 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 20112419 JRNL DOI 10.1002/PROT.22684 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 82379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4348 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.38 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.42 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6028 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 327 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2918 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 566 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.750 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3008 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4090 ; 1.022 ; 1.922 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 6.048 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;33.359 ;24.756 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 490 ;11.810 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.457 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 418 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2362 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1412 ; 0.181 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2024 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 505 ; 0.077 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.104 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 59 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1798 ; 0.422 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2834 ; 0.676 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1430 ; 0.877 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1256 ; 1.344 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 176 5 REMARK 3 1 B 2 B 176 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 700 ; 0.03 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 700 ; 0.03 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 759 ; 0.24 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 759 ; 0.24 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 700 ; 0.06 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 700 ; 0.06 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 759 ; 0.16 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 759 ; 0.16 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 95 REMARK 3 RESIDUE RANGE : A 96 A 124 REMARK 3 RESIDUE RANGE : A 125 A 140 REMARK 3 RESIDUE RANGE : A 141 A 176 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4698 20.9850 -0.2307 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: -0.0447 REMARK 3 T33: -0.0145 T12: 0.0153 REMARK 3 T13: 0.0100 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.2339 L22: 0.7460 REMARK 3 L33: 0.6930 L12: 0.1262 REMARK 3 L13: -0.1304 L23: 0.3235 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: -0.0021 S13: 0.0045 REMARK 3 S21: -0.1187 S22: -0.0073 S23: 0.0102 REMARK 3 S31: 0.0042 S32: -0.0092 S33: 0.0257 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 95 REMARK 3 RESIDUE RANGE : B 96 B 124 REMARK 3 RESIDUE RANGE : B 125 B 140 REMARK 3 RESIDUE RANGE : B 141 B 176 REMARK 3 ORIGIN FOR THE GROUP (A): -0.5969 29.0611 25.8560 REMARK 3 T TENSOR REMARK 3 T11: -0.0457 T22: 0.0045 REMARK 3 T33: -0.0151 T12: 0.0141 REMARK 3 T13: -0.0035 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 0.7244 L22: 0.2697 REMARK 3 L33: 0.7013 L12: 0.1352 REMARK 3 L13: -0.3209 L23: 0.1355 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: -0.1203 S13: -0.0099 REMARK 3 S21: 0.0009 S22: -0.0216 S23: -0.0060 REMARK 3 S31: 0.0115 S32: -0.0077 S33: 0.0266 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY REMARK 4 REMARK 4 2W2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-OCT-08. REMARK 100 THE DEPOSITION ID IS D_1290037984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86850 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2GC9 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.24900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 174.37350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.12450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -15 REMARK 465 GLY A -14 REMARK 465 GLY A -13 REMARK 465 SER A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 GLY A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 ASP A -1 REMARK 465 LYS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 177 REMARK 465 LYS A 178 REMARK 465 MET B -15 REMARK 465 GLY B -14 REMARK 465 GLY B -13 REMARK 465 SER B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 GLY B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 ASP B -1 REMARK 465 LYS B 0 REMARK 465 MET B 1 REMARK 465 ASN B 177 REMARK 465 LYS B 178 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 34 13.69 -143.34 REMARK 500 HIS A 112 33.32 -140.76 REMARK 500 LYS B 6 -32.74 -131.14 REMARK 500 HIS B 34 13.35 -142.29 REMARK 500 HIS B 112 33.12 -140.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2025 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A2026 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A2027 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A2033 DISTANCE = 6.38 ANGSTROMS REMARK 525 HOH B2001 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B2033 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH B2037 DISTANCE = 6.17 ANGSTROMS REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W2B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SINGLE POINT MUTANT TYR20PHE P-COUMARIC ACID REMARK 900 DECARBOXYLASE FROM LACTOBACILLUS PLANTARUM: STRUCTURAL INSIGHTS REMARK 900 INTO THE ACTIVE SITE AND DECARBOXYLATION CATALYTIC MECHANISM REMARK 900 RELATED ID: 2W2F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SINGLE POINT MUTANT ARG48GLN OF P-COUMARIC REMARK 900 ACID DECARBOXYLASE FROM LACTOBACILLUS PLANTARUM STRUCTURAL INSIGHTS REMARK 900 INTO THE ACTIVE SITE AND DECARBOXYLATION CATALYTIC MECHANISM REMARK 900 RELATED ID: 2GC9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF (PC05870A) FROM LACTOBACILLUSPLANTARUM AT 1.70 REMARK 900 A RESOLUTION REMARK 900 RELATED ID: 2WSJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SINGLE POINT MUTANT GLU71SER P-COUMARIC ACID REMARK 900 DECARBOXYLASE FROM LACTOBACILLUS PLANTARUM: STRUCTURAL INSIGHTS REMARK 900 INTO THE ACTIVE SITE AND DECARBOXYLATION CATALYTIC MECHANISM DBREF 2W2A A -15 0 PDB 2W2A 2W2A -15 0 DBREF 2W2A A 1 178 UNP Q88RY7 Q88RY7_LACPL 1 178 DBREF 2W2A B -15 0 PDB 2W2A 2W2A -15 0 DBREF 2W2A B 1 178 UNP Q88RY7 Q88RY7_LACPL 1 178 SEQRES 1 A 194 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLY ASP ASP SEQRES 2 A 194 ASP ASP LYS MET THR LYS THR PHE LYS THR LEU ASP ASP SEQRES 3 A 194 PHE LEU GLY THR HIS PHE ILE TYR THR TYR ASP ASN GLY SEQRES 4 A 194 TRP GLU TYR GLU TRP TYR ALA LYS ASN ASP HIS THR VAL SEQRES 5 A 194 ASP TYR ARG ILE HIS GLY GLY MET VAL ALA GLY ARG TRP SEQRES 6 A 194 VAL THR ASP GLN LYS ALA ASP ILE VAL MET LEU THR GLU SEQRES 7 A 194 GLY ILE TYR LYS ILE SER TRP THR GLU PRO THR GLY THR SEQRES 8 A 194 ASP VAL ALA LEU ASP PHE MET PRO ASN GLU LYS LYS LEU SEQRES 9 A 194 HIS GLY THR ILE PHE PHE PRO LYS TRP VAL GLU GLU HIS SEQRES 10 A 194 PRO GLU ILE THR VAL THR TYR GLN ASN GLU HIS ILE ASP SEQRES 11 A 194 LEU MET GLU GLN SER ARG GLU LYS TYR ALA THR TYR PRO SEQRES 12 A 194 LYS LEU VAL VAL PRO GLU PHE ALA ASN ILE THR TYR MET SEQRES 13 A 194 GLY ASP ALA GLY GLN ASN ASN GLU ASP VAL ILE SER GLU SEQRES 14 A 194 ALA PRO TYR LYS GLU MET PRO ASN ASP ILE ARG ASN GLY SEQRES 15 A 194 LYS TYR PHE ASP GLN ASN TYR HIS ARG LEU ASN LYS SEQRES 1 B 194 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLY ASP ASP SEQRES 2 B 194 ASP ASP LYS MET THR LYS THR PHE LYS THR LEU ASP ASP SEQRES 3 B 194 PHE LEU GLY THR HIS PHE ILE TYR THR TYR ASP ASN GLY SEQRES 4 B 194 TRP GLU TYR GLU TRP TYR ALA LYS ASN ASP HIS THR VAL SEQRES 5 B 194 ASP TYR ARG ILE HIS GLY GLY MET VAL ALA GLY ARG TRP SEQRES 6 B 194 VAL THR ASP GLN LYS ALA ASP ILE VAL MET LEU THR GLU SEQRES 7 B 194 GLY ILE TYR LYS ILE SER TRP THR GLU PRO THR GLY THR SEQRES 8 B 194 ASP VAL ALA LEU ASP PHE MET PRO ASN GLU LYS LYS LEU SEQRES 9 B 194 HIS GLY THR ILE PHE PHE PRO LYS TRP VAL GLU GLU HIS SEQRES 10 B 194 PRO GLU ILE THR VAL THR TYR GLN ASN GLU HIS ILE ASP SEQRES 11 B 194 LEU MET GLU GLN SER ARG GLU LYS TYR ALA THR TYR PRO SEQRES 12 B 194 LYS LEU VAL VAL PRO GLU PHE ALA ASN ILE THR TYR MET SEQRES 13 B 194 GLY ASP ALA GLY GLN ASN ASN GLU ASP VAL ILE SER GLU SEQRES 14 B 194 ALA PRO TYR LYS GLU MET PRO ASN ASP ILE ARG ASN GLY SEQRES 15 B 194 LYS TYR PHE ASP GLN ASN TYR HIS ARG LEU ASN LYS FORMUL 3 HOH *566(H2 O) HELIX 1 1 THR A 7 PHE A 11 1 5 HELIX 2 2 LYS A 96 GLU A 100 1 5 HELIX 3 3 PRO A 102 THR A 105 1 4 HELIX 4 4 GLN A 109 LYS A 122 1 14 HELIX 5 5 MET A 159 ASN A 165 1 7 HELIX 6 6 THR B 7 PHE B 11 1 5 HELIX 7 7 LYS B 96 GLU B 100 1 5 HELIX 8 8 PRO B 102 THR B 105 1 4 HELIX 9 9 GLN B 109 LYS B 122 1 14 HELIX 10 10 MET B 159 ASN B 165 1 7 SHEET 1 AA 5 GLY A 47 VAL A 50 0 SHEET 2 AA 5 THR A 35 ILE A 40 -1 O TYR A 38 N VAL A 50 SHEET 3 AA 5 GLY A 23 ASN A 32 -1 O GLU A 27 N ARG A 39 SHEET 4 AA 5 GLY A 13 TYR A 20 -1 O THR A 14 N ALA A 30 SHEET 5 AA 5 ASN A 136 ASP A 142 -1 O ASN A 136 N THR A 19 SHEET 1 AB 5 LEU A 129 ALA A 135 0 SHEET 2 AB 5 LYS A 86 PHE A 94 -1 O LEU A 88 N ALA A 135 SHEET 3 AB 5 GLY A 74 MET A 82 -1 O ASP A 76 N PHE A 93 SHEET 4 AB 5 ILE A 64 GLU A 71 -1 O TYR A 65 N PHE A 81 SHEET 5 AB 5 ASP A 56 THR A 61 -1 O ASP A 56 N SER A 68 SHEET 1 BA 5 GLY B 47 VAL B 50 0 SHEET 2 BA 5 THR B 35 ILE B 40 -1 O TYR B 38 N VAL B 50 SHEET 3 BA 5 GLY B 23 ASN B 32 -1 O GLU B 27 N ARG B 39 SHEET 4 BA 5 GLY B 13 TYR B 20 -1 O THR B 14 N ALA B 30 SHEET 5 BA 5 ASN B 136 ASP B 142 -1 O ASN B 136 N THR B 19 SHEET 1 BB 5 LEU B 129 ALA B 135 0 SHEET 2 BB 5 LYS B 86 PHE B 94 -1 O LEU B 88 N ALA B 135 SHEET 3 BB 5 GLY B 74 MET B 82 -1 O ASP B 76 N PHE B 93 SHEET 4 BB 5 ILE B 64 GLU B 71 -1 O TYR B 65 N PHE B 81 SHEET 5 BB 5 ASP B 56 THR B 61 -1 O ASP B 56 N SER B 68 CISPEP 1 TYR A 126 PRO A 127 0 -2.15 CISPEP 2 TYR B 126 PRO B 127 0 -2.04 CRYST1 43.181 43.181 232.498 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023158 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004301 0.00000