HEADER OXIDOREDUCTASE 02-NOV-08 2W2L TITLE CRYSTAL STRUCTURE OF THE HOLO FORMS OF RHODOTORULA GRAMINIS D- TITLE 2 MANDELATE DEHYDROGENASE AT 2.5A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-MANDELATE DEHYDROGENASE; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE PROTEIN IS BIOLOGICALY ACTIVE AND CRYSTALLIZES AS COMPND 6 A DIMER; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: D-MANDELATE DEHYDROGENASE; COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: THE PROTEIN IS BIOLOGICALY ACTIVE AND CRYSTALLIZES AS COMPND 12 A DIMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOTORULA GRAMINIS; SOURCE 3 ORGANISM_TAXID: 29898; SOURCE 4 STRAIN: KGX39; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PPROEXHTB; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: RHODOTORULA GRAMINIS; SOURCE 11 ORGANISM_TAXID: 29898; SOURCE 12 STRAIN: KGX39; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PPROEXHTB KEYWDS OXIDOREDUCTASE, MANDELATE DEHYDROGENASE, 2-HYDROXYACID DEHYDROGENASE KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.G.VACHIERI,A.R.COLE,C.BAGNERIS,D.P.BAKER,C.A.FEWSON,A.K.BASAK REVDAT 3 13-DEC-23 2W2L 1 REMARK REVDAT 2 24-JAN-18 2W2L 1 SOURCE REMARK REVDAT 1 17-NOV-09 2W2L 0 JRNL AUTH S.G.VACHIERI,A.R.COLE,C.BAGNERIS,D.P.BAKER,C.A.FEWSON, JRNL AUTH 2 A.K.BASAK JRNL TITL CRYSTAL STRUCTURE OF THE APO AND HOLO FORMS OF RHODOTORULA JRNL TITL 2 GRAMINIS D(-)-MANDELATE DEHYDROGENASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 56176 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3021 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4202 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2390 REMARK 3 BIN FREE R VALUE SET COUNT : 180 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10626 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 196 REMARK 3 SOLVENT ATOMS : 491 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.17000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.464 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.303 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.216 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.717 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.862 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10975 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14922 ; 1.855 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1378 ; 8.567 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 466 ;36.620 ;23.476 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1750 ;17.934 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 74 ;18.145 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1685 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8258 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 5306 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 7416 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 637 ; 0.265 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 93 ; 0.186 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 7044 ; 0.818 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 10936 ; 1.421 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4415 ; 2.219 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3985 ; 3.455 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. MET 1 B AND MET 1 C WERE NOT MODELLED DUE TO REMARK 3 DISORDERED DENSITY. REMARK 4 REMARK 4 2W2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1290038021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59123 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1MX3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM POTASSIUM PHOSPHATE PH 6.0, 42% REMARK 280 SATURATED AMMONIUM SULPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.07700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 347 REMARK 465 ALA A 348 REMARK 465 MET B 1 REMARK 465 ALA B 347 REMARK 465 ALA B 348 REMARK 465 MET C 1 REMARK 465 SER C 346 REMARK 465 ALA C 347 REMARK 465 ALA C 348 REMARK 465 SER D 346 REMARK 465 ALA D 347 REMARK 465 ALA D 348 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 233 CG CD1 CD2 REMARK 470 ALA B 200 CB REMARK 470 LEU B 233 CG CD1 CD2 REMARK 470 LEU C 233 CG CD1 CD2 REMARK 470 ALA D 200 CB REMARK 470 LEU D 233 CG CD1 CD2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 14 CZ NH1 NH2 REMARK 480 ARG A 48 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 201 CG CD OE1 OE2 REMARK 480 LYS A 232 CB CG CD CE NZ REMARK 480 LYS A 340 CG CD CE NZ REMARK 480 ARG B 48 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU B 201 CB CG CD OE1 OE2 REMARK 480 LYS B 232 CB CG CD CE NZ REMARK 480 ARG C 14 CD NE CZ NH1 NH2 REMARK 480 ARG C 45 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG C 48 CD NE CZ NH1 NH2 REMARK 480 GLU C 201 CB CG CD OE1 OE2 REMARK 480 LYS C 204 CG CD CE NZ REMARK 480 LYS C 232 CG CD CE NZ REMARK 480 LYS C 291 CG CD CE NZ REMARK 480 ARG D 48 CZ NH1 NH2 REMARK 480 GLU D 201 CG CD OE1 OE2 REMARK 480 LYS D 204 CG CD CE NZ REMARK 480 LYS D 232 CG CD CE NZ REMARK 480 LYS D 291 CG CD CE NZ REMARK 480 LYS D 340 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU D 46 NH2 ARG D 48 1.71 REMARK 500 O VAL C 228 O3D NAD C 1346 2.06 REMARK 500 OH TYR B 192 OE2 GLU B 203 2.07 REMARK 500 O ASP D 281 O HOH D 2100 2.15 REMARK 500 O HOH C 2009 O HOH C 2031 2.17 REMARK 500 O HOH C 2100 O HOH C 2103 2.18 REMARK 500 O VAL D 228 O3D NAD D 1346 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 14 NE ARG A 14 CZ 0.204 REMARK 500 GLU A 201 CB GLU A 201 CG 0.206 REMARK 500 LYS A 232 CA LYS A 232 CB -0.159 REMARK 500 LYS A 232 CB LYS A 232 CG -0.188 REMARK 500 LYS A 340 CB LYS A 340 CG -0.278 REMARK 500 ARG B 48 CB ARG B 48 CG -0.168 REMARK 500 GLU B 201 CA GLU B 201 CB -0.273 REMARK 500 LYS B 232 CA LYS B 232 CB -0.300 REMARK 500 ARG C 45 CA ARG C 45 CB -0.333 REMARK 500 ARG C 48 CG ARG C 48 CD -0.417 REMARK 500 ARG D 48 NE ARG D 48 CZ 0.385 REMARK 500 GLU D 101 CG GLU D 101 CD 0.117 REMARK 500 GLU D 201 CB GLU D 201 CG 0.294 REMARK 500 LYS D 232 CB LYS D 232 CG -0.293 REMARK 500 LYS D 291 CB LYS D 291 CG 0.491 REMARK 500 LYS D 340 CB LYS D 340 CG -0.302 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 2 C - N - CA ANGL. DEV. = -9.5 DEGREES REMARK 500 ARG A 14 CD - NE - CZ ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG A 14 NE - CZ - NH1 ANGL. DEV. = -17.9 DEGREES REMARK 500 ARG A 14 NE - CZ - NH2 ANGL. DEV. = 17.3 DEGREES REMARK 500 GLU A 201 CA - CB - CG ANGL. DEV. = -14.3 DEGREES REMARK 500 LYS A 232 CB - CA - C ANGL. DEV. = 16.9 DEGREES REMARK 500 LYS A 232 CA - CB - CG ANGL. DEV. = -23.2 DEGREES REMARK 500 ARG B 137 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG C 45 N - CA - CB ANGL. DEV. = 12.5 DEGREES REMARK 500 ARG C 48 CD - NE - CZ ANGL. DEV. = 14.5 DEGREES REMARK 500 GLU C 201 N - CA - CB ANGL. DEV. = -24.4 DEGREES REMARK 500 ARG C 219 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LYS C 291 CA - CB - CG ANGL. DEV. = -13.8 DEGREES REMARK 500 LYS D 26 N - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 LYS D 204 CB - CG - CD ANGL. DEV. = 22.1 DEGREES REMARK 500 LYS D 291 CA - CB - CG ANGL. DEV. = -33.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 2 -157.87 -83.72 REMARK 500 ARG A 3 85.36 44.63 REMARK 500 PRO A 12 -178.58 -69.57 REMARK 500 GLN A 25 -81.36 12.69 REMARK 500 ASN A 33 65.94 32.82 REMARK 500 THR A 35 -81.22 -105.87 REMARK 500 GLU A 46 0.34 -62.70 REMARK 500 PHE A 91 48.16 -159.09 REMARK 500 ASN A 108 -163.28 -100.31 REMARK 500 SER A 157 -21.10 -141.31 REMARK 500 GLU A 216 -73.74 -41.42 REMARK 500 SER A 227 75.28 -150.35 REMARK 500 MET A 231 -149.80 -141.19 REMARK 500 ALA A 256 -89.33 -85.76 REMARK 500 GLU A 286 128.64 -39.36 REMARK 500 PRO A 344 -160.33 -72.26 REMARK 500 ARG B 3 104.27 27.44 REMARK 500 HIS B 15 -52.00 -128.73 REMARK 500 THR B 35 -82.96 -114.35 REMARK 500 PHE B 91 47.83 -143.48 REMARK 500 ASN B 108 -159.13 -106.68 REMARK 500 LYS B 232 -66.40 -23.49 REMARK 500 ASP B 239 -165.00 -126.35 REMARK 500 ALA B 256 -91.64 -94.46 REMARK 500 THR B 303 55.20 -62.64 REMARK 500 VAL C 6 84.51 -178.18 REMARK 500 PRO C 12 -168.08 -70.72 REMARK 500 THR C 35 -60.80 -120.52 REMARK 500 LYS C 47 49.94 39.63 REMARK 500 ASN C 70 149.89 -39.14 REMARK 500 SER C 80 -62.86 11.12 REMARK 500 PHE C 91 43.46 -158.87 REMARK 500 ASN C 108 -169.50 -107.63 REMARK 500 LEU C 171 59.52 -141.10 REMARK 500 SER C 227 78.69 -160.54 REMARK 500 ASP C 239 -165.27 -128.45 REMARK 500 ALA C 256 -86.73 -103.78 REMARK 500 LYS D 26 -42.71 -137.71 REMARK 500 THR D 35 -74.16 -127.09 REMARK 500 ASP D 239 -159.60 -140.92 REMARK 500 ALA D 256 -95.29 -82.03 REMARK 500 VAL D 308 84.38 -68.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN A 24 GLN A 25 100.43 REMARK 500 ARG C 5 VAL C 6 -104.34 REMARK 500 SER C 79 SER C 80 97.36 REMARK 500 GLN D 25 LYS D 26 -96.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 14 0.14 SIDE CHAIN REMARK 500 ARG C 48 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 1347 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1348 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 1347 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1348 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD C 1346 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1347 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD D 1346 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1347 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W2K RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE APO FORMS OF RHODOTORULA GRAMINIS D- REMARK 900 MANDELATE DEHYDROGENASE AT 1.8A. REMARK 999 REMARK 999 SEQUENCE REMARK 999 IMPORTANT SEQUENCE DISCREPANCIES EXISTED WITH THE UNIPROT REMARK 999 ENTRY. THE AUTHOR OF THE ENTRY HAS BEEN INFORMED AND IS IN REMARK 999 THE PROCESS OF UPDATING THE ENTRY. THE ORIGINAL ENTRY IN REMARK 999 THE DATABANK SPECIFIED STARTING FROM RESIDUE 337 UNTIL REMARK 999 LAST RESIDUE, THE FOLLOWING SEQUENCE VRLCPNSLRPAFRAY, REMARK 999 INSTEAD THE STRUCTURE SHOWS THE FOLLOWING SEQUENCE REMARK 999 PAGKVFAPSS. THIS INFORMATION OBTAINED FROM THE STRUCTURE REMARK 999 WAS COMPARED WITH THE GENE GENOMIC SEQUENCE AND PROVED REMARK 999 THAT THE INITIAL INTRON AND EXON ASSIGNMENT WAS INCORRECT. REMARK 999 THE SEQUENCE INFERED FROM THE WILD TYPE D-MANDELATE REMARK 999 DEHYDROGENASE STRUCTURE WAS USED TO PRODUCE THE REMARK 999 RECOMBINANT PROTEIN IN E.COLI DBREF 2W2L A 1 348 UNP Q7LLW9 Q7LLW9_RHOGR 1 348 DBREF 2W2L B 1 348 UNP Q7LLW9 Q7LLW9_RHOGR 1 348 DBREF 2W2L C 1 348 UNP Q7LLW9 Q7LLW9_RHOGR 1 348 DBREF 2W2L D 1 348 UNP Q7LLW9 Q7LLW9_RHOGR 1 348 SEQADV 2W2L ILE D 73 UNP Q7LLW9 LEU 73 CONFLICT SEQRES 1 A 348 MET PRO ARG PRO ARG VAL LEU LEU LEU GLY ASP PRO ALA SEQRES 2 A 348 ARG HIS LEU ASP ASP LEU TRP SER ASP PHE GLN GLN LYS SEQRES 3 A 348 PHE GLU VAL ILE PRO ALA ASN LEU THR THR HIS ASP GLY SEQRES 4 A 348 PHE LYS GLN ALA LEU ARG GLU LYS ARG TYR GLY ASP PHE SEQRES 5 A 348 GLU ALA ILE ILE LYS LEU ALA VAL GLU ASN GLY THR GLU SEQRES 6 A 348 SER TYR PRO TRP ASN ALA ASP LEU ILE SER HIS LEU PRO SEQRES 7 A 348 SER SER LEU LYS VAL PHE ALA ALA ALA GLY ALA GLY PHE SEQRES 8 A 348 ASP TRP LEU ASP LEU ASP ALA LEU ASN GLU ARG GLY VAL SEQRES 9 A 348 ALA PHE ALA ASN SER ARG GLY ALA GLY ASP THR ALA THR SEQRES 10 A 348 SER ASP LEU ALA LEU TYR LEU ILE LEU SER VAL PHE ARG SEQRES 11 A 348 LEU ALA SER TYR SER GLU ARG ALA ALA ARG THR GLY ASP SEQRES 12 A 348 PRO GLU THR PHE ASN ARG VAL HIS LEU GLU ILE GLY LYS SEQRES 13 A 348 SER ALA HIS ASN PRO ARG GLY HIS VAL LEU GLY ALA VAL SEQRES 14 A 348 GLY LEU GLY ALA ILE GLN LYS GLU ILE ALA ARG LYS ALA SEQRES 15 A 348 VAL HIS GLY LEU GLY MET LYS LEU VAL TYR TYR ASP VAL SEQRES 16 A 348 ALA PRO ALA ASP ALA GLU THR GLU LYS ALA LEU GLY ALA SEQRES 17 A 348 GLU ARG VAL ASP SER LEU GLU GLU LEU ALA ARG ARG SER SEQRES 18 A 348 ASP CYS VAL SER VAL SER VAL PRO TYR MET LYS LEU THR SEQRES 19 A 348 HIS HIS LEU ILE ASP GLU ALA PHE PHE ALA ALA MET LYS SEQRES 20 A 348 PRO GLY SER ARG ILE VAL ASN THR ALA ARG GLY PRO VAL SEQRES 21 A 348 ILE SER GLN ASP ALA LEU ILE ALA ALA LEU LYS SER GLY SEQRES 22 A 348 LYS LEU LEU SER ALA GLY LEU ASP VAL HIS GLU PHE GLU SEQRES 23 A 348 PRO GLN VAL SER LYS GLU LEU ILE GLU MET LYS HIS VAL SEQRES 24 A 348 THR LEU THR THR HIS ILE GLY GLY VAL ALA ILE GLU THR SEQRES 25 A 348 PHE HIS GLU PHE GLU ARG LEU THR MET THR ASN ILE ASP SEQRES 26 A 348 ARG PHE LEU LEU GLN GLY LYS PRO LEU LEU THR PRO ALA SEQRES 27 A 348 GLY LYS VAL PHE ALA PRO SER SER ALA ALA SEQRES 1 B 348 MET PRO ARG PRO ARG VAL LEU LEU LEU GLY ASP PRO ALA SEQRES 2 B 348 ARG HIS LEU ASP ASP LEU TRP SER ASP PHE GLN GLN LYS SEQRES 3 B 348 PHE GLU VAL ILE PRO ALA ASN LEU THR THR HIS ASP GLY SEQRES 4 B 348 PHE LYS GLN ALA LEU ARG GLU LYS ARG TYR GLY ASP PHE SEQRES 5 B 348 GLU ALA ILE ILE LYS LEU ALA VAL GLU ASN GLY THR GLU SEQRES 6 B 348 SER TYR PRO TRP ASN ALA ASP LEU ILE SER HIS LEU PRO SEQRES 7 B 348 SER SER LEU LYS VAL PHE ALA ALA ALA GLY ALA GLY PHE SEQRES 8 B 348 ASP TRP LEU ASP LEU ASP ALA LEU ASN GLU ARG GLY VAL SEQRES 9 B 348 ALA PHE ALA ASN SER ARG GLY ALA GLY ASP THR ALA THR SEQRES 10 B 348 SER ASP LEU ALA LEU TYR LEU ILE LEU SER VAL PHE ARG SEQRES 11 B 348 LEU ALA SER TYR SER GLU ARG ALA ALA ARG THR GLY ASP SEQRES 12 B 348 PRO GLU THR PHE ASN ARG VAL HIS LEU GLU ILE GLY LYS SEQRES 13 B 348 SER ALA HIS ASN PRO ARG GLY HIS VAL LEU GLY ALA VAL SEQRES 14 B 348 GLY LEU GLY ALA ILE GLN LYS GLU ILE ALA ARG LYS ALA SEQRES 15 B 348 VAL HIS GLY LEU GLY MET LYS LEU VAL TYR TYR ASP VAL SEQRES 16 B 348 ALA PRO ALA ASP ALA GLU THR GLU LYS ALA LEU GLY ALA SEQRES 17 B 348 GLU ARG VAL ASP SER LEU GLU GLU LEU ALA ARG ARG SER SEQRES 18 B 348 ASP CYS VAL SER VAL SER VAL PRO TYR MET LYS LEU THR SEQRES 19 B 348 HIS HIS LEU ILE ASP GLU ALA PHE PHE ALA ALA MET LYS SEQRES 20 B 348 PRO GLY SER ARG ILE VAL ASN THR ALA ARG GLY PRO VAL SEQRES 21 B 348 ILE SER GLN ASP ALA LEU ILE ALA ALA LEU LYS SER GLY SEQRES 22 B 348 LYS LEU LEU SER ALA GLY LEU ASP VAL HIS GLU PHE GLU SEQRES 23 B 348 PRO GLN VAL SER LYS GLU LEU ILE GLU MET LYS HIS VAL SEQRES 24 B 348 THR LEU THR THR HIS ILE GLY GLY VAL ALA ILE GLU THR SEQRES 25 B 348 PHE HIS GLU PHE GLU ARG LEU THR MET THR ASN ILE ASP SEQRES 26 B 348 ARG PHE LEU LEU GLN GLY LYS PRO LEU LEU THR PRO ALA SEQRES 27 B 348 GLY LYS VAL PHE ALA PRO SER SER ALA ALA SEQRES 1 C 348 MET PRO ARG PRO ARG VAL LEU LEU LEU GLY ASP PRO ALA SEQRES 2 C 348 ARG HIS LEU ASP ASP LEU TRP SER ASP PHE GLN GLN LYS SEQRES 3 C 348 PHE GLU VAL ILE PRO ALA ASN LEU THR THR HIS ASP GLY SEQRES 4 C 348 PHE LYS GLN ALA LEU ARG GLU LYS ARG TYR GLY ASP PHE SEQRES 5 C 348 GLU ALA ILE ILE LYS LEU ALA VAL GLU ASN GLY THR GLU SEQRES 6 C 348 SER TYR PRO TRP ASN ALA ASP LEU ILE SER HIS LEU PRO SEQRES 7 C 348 SER SER LEU LYS VAL PHE ALA ALA ALA GLY ALA GLY PHE SEQRES 8 C 348 ASP TRP LEU ASP LEU ASP ALA LEU ASN GLU ARG GLY VAL SEQRES 9 C 348 ALA PHE ALA ASN SER ARG GLY ALA GLY ASP THR ALA THR SEQRES 10 C 348 SER ASP LEU ALA LEU TYR LEU ILE LEU SER VAL PHE ARG SEQRES 11 C 348 LEU ALA SER TYR SER GLU ARG ALA ALA ARG THR GLY ASP SEQRES 12 C 348 PRO GLU THR PHE ASN ARG VAL HIS LEU GLU ILE GLY LYS SEQRES 13 C 348 SER ALA HIS ASN PRO ARG GLY HIS VAL LEU GLY ALA VAL SEQRES 14 C 348 GLY LEU GLY ALA ILE GLN LYS GLU ILE ALA ARG LYS ALA SEQRES 15 C 348 VAL HIS GLY LEU GLY MET LYS LEU VAL TYR TYR ASP VAL SEQRES 16 C 348 ALA PRO ALA ASP ALA GLU THR GLU LYS ALA LEU GLY ALA SEQRES 17 C 348 GLU ARG VAL ASP SER LEU GLU GLU LEU ALA ARG ARG SER SEQRES 18 C 348 ASP CYS VAL SER VAL SER VAL PRO TYR MET LYS LEU THR SEQRES 19 C 348 HIS HIS LEU ILE ASP GLU ALA PHE PHE ALA ALA MET LYS SEQRES 20 C 348 PRO GLY SER ARG ILE VAL ASN THR ALA ARG GLY PRO VAL SEQRES 21 C 348 ILE SER GLN ASP ALA LEU ILE ALA ALA LEU LYS SER GLY SEQRES 22 C 348 LYS LEU LEU SER ALA GLY LEU ASP VAL HIS GLU PHE GLU SEQRES 23 C 348 PRO GLN VAL SER LYS GLU LEU ILE GLU MET LYS HIS VAL SEQRES 24 C 348 THR LEU THR THR HIS ILE GLY GLY VAL ALA ILE GLU THR SEQRES 25 C 348 PHE HIS GLU PHE GLU ARG LEU THR MET THR ASN ILE ASP SEQRES 26 C 348 ARG PHE LEU LEU GLN GLY LYS PRO LEU LEU THR PRO ALA SEQRES 27 C 348 GLY LYS VAL PHE ALA PRO SER SER ALA ALA SEQRES 1 D 348 MET PRO ARG PRO ARG VAL LEU LEU LEU GLY ASP PRO ALA SEQRES 2 D 348 ARG HIS LEU ASP ASP LEU TRP SER ASP PHE GLN GLN LYS SEQRES 3 D 348 PHE GLU VAL ILE PRO ALA ASN LEU THR THR HIS ASP GLY SEQRES 4 D 348 PHE LYS GLN ALA LEU ARG GLU LYS ARG TYR GLY ASP PHE SEQRES 5 D 348 GLU ALA ILE ILE LYS LEU ALA VAL GLU ASN GLY THR GLU SEQRES 6 D 348 SER TYR PRO TRP ASN ALA ASP ILE ILE SER HIS LEU PRO SEQRES 7 D 348 SER SER LEU LYS VAL PHE ALA ALA ALA GLY ALA GLY PHE SEQRES 8 D 348 ASP TRP LEU ASP LEU ASP ALA LEU ASN GLU ARG GLY VAL SEQRES 9 D 348 ALA PHE ALA ASN SER ARG GLY ALA GLY ASP THR ALA THR SEQRES 10 D 348 SER ASP LEU ALA LEU TYR LEU ILE LEU SER VAL PHE ARG SEQRES 11 D 348 LEU ALA SER TYR SER GLU ARG ALA ALA ARG THR GLY ASP SEQRES 12 D 348 PRO GLU THR PHE ASN ARG VAL HIS LEU GLU ILE GLY LYS SEQRES 13 D 348 SER ALA HIS ASN PRO ARG GLY HIS VAL LEU GLY ALA VAL SEQRES 14 D 348 GLY LEU GLY ALA ILE GLN LYS GLU ILE ALA ARG LYS ALA SEQRES 15 D 348 VAL HIS GLY LEU GLY MET LYS LEU VAL TYR TYR ASP VAL SEQRES 16 D 348 ALA PRO ALA ASP ALA GLU THR GLU LYS ALA LEU GLY ALA SEQRES 17 D 348 GLU ARG VAL ASP SER LEU GLU GLU LEU ALA ARG ARG SER SEQRES 18 D 348 ASP CYS VAL SER VAL SER VAL PRO TYR MET LYS LEU THR SEQRES 19 D 348 HIS HIS LEU ILE ASP GLU ALA PHE PHE ALA ALA MET LYS SEQRES 20 D 348 PRO GLY SER ARG ILE VAL ASN THR ALA ARG GLY PRO VAL SEQRES 21 D 348 ILE SER GLN ASP ALA LEU ILE ALA ALA LEU LYS SER GLY SEQRES 22 D 348 LYS LEU LEU SER ALA GLY LEU ASP VAL HIS GLU PHE GLU SEQRES 23 D 348 PRO GLN VAL SER LYS GLU LEU ILE GLU MET LYS HIS VAL SEQRES 24 D 348 THR LEU THR THR HIS ILE GLY GLY VAL ALA ILE GLU THR SEQRES 25 D 348 PHE HIS GLU PHE GLU ARG LEU THR MET THR ASN ILE ASP SEQRES 26 D 348 ARG PHE LEU LEU GLN GLY LYS PRO LEU LEU THR PRO ALA SEQRES 27 D 348 GLY LYS VAL PHE ALA PRO SER SER ALA ALA HET NAD A1347 44 HET SO4 A1348 5 HET NAD B1347 44 HET SO4 B1348 5 HET NAD C1346 44 HET SO4 C1347 5 HET NAD D1346 44 HET SO4 D1347 5 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM SO4 SULFATE ION FORMUL 5 NAD 4(C21 H27 N7 O14 P2) FORMUL 6 SO4 4(O4 S 2-) FORMUL 13 HOH *491(H2 O) HELIX 1 1 LEU A 16 PHE A 27 1 12 HELIX 2 2 THR A 36 GLU A 46 1 11 HELIX 3 3 GLY A 63 TYR A 67 5 5 HELIX 4 4 ASN A 70 SER A 75 1 6 HELIX 5 5 ASP A 95 GLU A 101 1 7 HELIX 6 6 GLY A 113 LEU A 131 1 19 HELIX 7 7 LEU A 131 THR A 141 1 11 HELIX 8 8 ASP A 143 GLY A 155 1 13 HELIX 9 9 GLY A 172 HIS A 184 1 13 HELIX 10 10 ASP A 199 GLY A 207 1 9 HELIX 11 11 SER A 213 SER A 221 1 9 HELIX 12 12 ASP A 239 ALA A 245 1 7 HELIX 13 13 ARG A 257 VAL A 260 5 4 HELIX 14 14 SER A 262 SER A 272 1 11 HELIX 15 15 SER A 290 MET A 296 1 7 HELIX 16 16 ALA A 309 GLN A 330 1 22 HELIX 17 17 ASP B 17 PHE B 27 1 11 HELIX 18 18 THR B 36 LYS B 47 1 12 HELIX 19 19 GLY B 63 TYR B 67 5 5 HELIX 20 20 ASN B 70 HIS B 76 1 7 HELIX 21 21 ASP B 95 GLU B 101 1 7 HELIX 22 22 GLY B 113 LEU B 131 1 19 HELIX 23 23 LEU B 131 THR B 141 1 11 HELIX 24 24 ASP B 143 ALA B 158 1 16 HELIX 25 25 GLY B 172 GLY B 185 1 14 HELIX 26 26 ASP B 199 GLY B 207 1 9 HELIX 27 27 SER B 213 SER B 221 1 9 HELIX 28 28 MET B 231 HIS B 235 5 5 HELIX 29 29 ASP B 239 MET B 246 1 8 HELIX 30 30 ARG B 257 VAL B 260 5 4 HELIX 31 31 SER B 262 SER B 272 1 11 HELIX 32 32 SER B 290 GLU B 295 1 6 HELIX 33 33 ALA B 309 LEU B 329 1 21 HELIX 34 34 LEU C 16 PHE C 27 1 12 HELIX 35 35 THR C 36 GLU C 46 1 11 HELIX 36 36 GLY C 63 TYR C 67 5 5 HELIX 37 37 ASN C 70 SER C 75 1 6 HELIX 38 38 ASP C 95 GLU C 101 1 7 HELIX 39 39 GLY C 113 LEU C 131 1 19 HELIX 40 40 LEU C 131 THR C 141 1 11 HELIX 41 41 ASP C 143 GLY C 155 1 13 HELIX 42 42 GLY C 172 HIS C 184 1 13 HELIX 43 43 ASP C 199 GLY C 207 1 9 HELIX 44 44 SER C 213 SER C 221 1 9 HELIX 45 45 MET C 231 HIS C 235 5 5 HELIX 46 46 ASP C 239 MET C 246 1 8 HELIX 47 47 ARG C 257 VAL C 260 5 4 HELIX 48 48 SER C 262 SER C 272 1 11 HELIX 49 49 SER C 290 GLU C 295 1 6 HELIX 50 50 ALA C 309 LEU C 329 1 21 HELIX 51 51 LEU D 16 PHE D 27 1 12 HELIX 52 52 THR D 36 GLU D 46 1 11 HELIX 53 53 GLY D 63 TYR D 67 5 5 HELIX 54 54 ASN D 70 SER D 75 1 6 HELIX 55 55 ASP D 95 ARG D 102 1 8 HELIX 56 56 GLY D 113 LEU D 131 1 19 HELIX 57 57 LEU D 131 ARG D 140 1 10 HELIX 58 58 ASP D 143 GLY D 155 1 13 HELIX 59 59 GLY D 172 GLY D 185 1 14 HELIX 60 60 ASP D 199 GLY D 207 1 9 HELIX 61 61 SER D 213 SER D 221 1 9 HELIX 62 62 MET D 231 HIS D 235 5 5 HELIX 63 63 ASP D 239 MET D 246 1 8 HELIX 64 64 ARG D 257 VAL D 260 5 4 HELIX 65 65 SER D 262 SER D 272 1 11 HELIX 66 66 SER D 290 GLU D 295 1 6 HELIX 67 67 ALA D 309 GLN D 330 1 22 SHEET 1 AA 5 GLU A 28 PRO A 31 0 SHEET 2 AA 5 ARG A 5 LEU A 8 1 O VAL A 6 N ILE A 30 SHEET 3 AA 5 ALA A 54 LYS A 57 1 O ALA A 54 N LEU A 7 SHEET 4 AA 5 VAL A 83 ALA A 86 1 O VAL A 83 N ILE A 55 SHEET 5 AA 5 ALA A 105 ALA A 107 1 O ALA A 105 N PHE A 84 SHEET 1 AB 7 GLU A 209 ARG A 210 0 SHEET 2 AB 7 LYS A 189 TYR A 193 1 O LEU A 190 N GLU A 209 SHEET 3 AB 7 VAL A 165 VAL A 169 1 O LEU A 166 N VAL A 191 SHEET 4 AB 7 CYS A 223 VAL A 226 1 O CYS A 223 N GLY A 167 SHEET 5 AB 7 SER A 250 ASN A 254 1 O ARG A 251 N VAL A 224 SHEET 6 AB 7 LEU A 275 LEU A 280 1 N LEU A 276 O SER A 250 SHEET 7 AB 7 VAL A 299 LEU A 301 1 O THR A 300 N LEU A 280 SHEET 1 BA 5 GLU B 28 PRO B 31 0 SHEET 2 BA 5 ARG B 5 LEU B 9 1 O VAL B 6 N ILE B 30 SHEET 3 BA 5 ALA B 54 LYS B 57 1 O ALA B 54 N LEU B 7 SHEET 4 BA 5 VAL B 83 ALA B 86 1 O VAL B 83 N ILE B 55 SHEET 5 BA 5 ALA B 105 ALA B 107 1 O ALA B 105 N PHE B 84 SHEET 1 BB 7 GLU B 209 ARG B 210 0 SHEET 2 BB 7 LYS B 189 TYR B 193 1 O LEU B 190 N GLU B 209 SHEET 3 BB 7 VAL B 165 VAL B 169 1 O LEU B 166 N VAL B 191 SHEET 4 BB 7 CYS B 223 VAL B 226 1 O CYS B 223 N GLY B 167 SHEET 5 BB 7 SER B 250 ASN B 254 1 O ARG B 251 N VAL B 224 SHEET 6 BB 7 LEU B 275 LEU B 280 1 N LEU B 276 O SER B 250 SHEET 7 BB 7 VAL B 299 LEU B 301 1 O THR B 300 N LEU B 280 SHEET 1 CA 5 GLU C 28 PRO C 31 0 SHEET 2 CA 5 ARG C 5 LEU C 8 1 O VAL C 6 N ILE C 30 SHEET 3 CA 5 ALA C 54 LYS C 57 1 O ALA C 54 N LEU C 7 SHEET 4 CA 5 VAL C 83 ALA C 86 1 O VAL C 83 N ILE C 55 SHEET 5 CA 5 ALA C 105 ALA C 107 1 O ALA C 105 N PHE C 84 SHEET 1 CB 7 GLU C 209 ARG C 210 0 SHEET 2 CB 7 LYS C 189 TYR C 193 1 O LEU C 190 N GLU C 209 SHEET 3 CB 7 VAL C 165 VAL C 169 1 O LEU C 166 N VAL C 191 SHEET 4 CB 7 CYS C 223 VAL C 226 1 O CYS C 223 N GLY C 167 SHEET 5 CB 7 SER C 250 ASN C 254 1 O ARG C 251 N VAL C 224 SHEET 6 CB 7 LEU C 275 LEU C 280 1 N LEU C 276 O SER C 250 SHEET 7 CB 7 VAL C 299 LEU C 301 1 O THR C 300 N LEU C 280 SHEET 1 DA 5 GLU D 28 PRO D 31 0 SHEET 2 DA 5 ARG D 5 LEU D 8 1 O VAL D 6 N ILE D 30 SHEET 3 DA 5 ALA D 54 LYS D 57 1 O ALA D 54 N LEU D 7 SHEET 4 DA 5 VAL D 83 ALA D 86 1 O VAL D 83 N ILE D 55 SHEET 5 DA 5 ALA D 105 ALA D 107 1 O ALA D 105 N PHE D 84 SHEET 1 DB 7 ALA D 208 ARG D 210 0 SHEET 2 DB 7 LYS D 189 TYR D 193 1 O LEU D 190 N GLU D 209 SHEET 3 DB 7 VAL D 165 VAL D 169 1 O LEU D 166 N VAL D 191 SHEET 4 DB 7 CYS D 223 VAL D 226 1 O CYS D 223 N GLY D 167 SHEET 5 DB 7 SER D 250 ASN D 254 1 O ARG D 251 N VAL D 224 SHEET 6 DB 7 LEU D 275 LEU D 280 1 N LEU D 276 O SER D 250 SHEET 7 DB 7 VAL D 299 LEU D 301 1 O THR D 300 N LEU D 280 CISPEP 1 TYR A 67 PRO A 68 0 3.02 CISPEP 2 GLU A 286 PRO A 287 0 6.61 CISPEP 3 TYR B 67 PRO B 68 0 1.36 CISPEP 4 GLU B 286 PRO B 287 0 2.25 CISPEP 5 TYR C 67 PRO C 68 0 -1.67 CISPEP 6 GLU C 286 PRO C 287 0 -0.76 CISPEP 7 MET D 1 PRO D 2 0 -10.73 CISPEP 8 TYR D 67 PRO D 68 0 -1.32 CISPEP 9 GLU D 286 PRO D 287 0 2.27 SITE 1 AC1 19 THR A 117 LEU A 171 GLY A 172 ALA A 173 SITE 2 AC1 19 ILE A 174 ASP A 194 VAL A 228 PRO A 229 SITE 3 AC1 19 MET A 231 THR A 234 THR A 255 ALA A 256 SITE 4 AC1 19 ARG A 257 ASP A 281 HIS A 304 GLY A 306 SITE 5 AC1 19 GLY A 307 HOH A2076 HOH A2088 SITE 1 AC2 4 VAL A 60 ALA A 89 GLY A 90 ARG A 257 SITE 1 AC3 19 THR B 117 GLY B 172 ALA B 173 ILE B 174 SITE 2 AC3 19 TYR B 193 ASP B 194 VAL B 195 VAL B 228 SITE 3 AC3 19 PRO B 229 THR B 255 ALA B 256 ARG B 257 SITE 4 AC3 19 ASP B 281 HIS B 304 GLY B 306 GLY B 307 SITE 5 AC3 19 HOH B2024 HOH B2042 HOH B2058 SITE 1 AC4 4 GLY B 88 ALA B 89 GLY B 90 ARG B 257 SITE 1 AC5 20 THR C 117 GLY C 170 GLY C 172 ALA C 173 SITE 2 AC5 20 ILE C 174 TYR C 193 ASP C 194 VAL C 195 SITE 3 AC5 20 VAL C 228 PRO C 229 THR C 234 THR C 255 SITE 4 AC5 20 ALA C 256 HIS C 304 GLY C 306 GLY C 307 SITE 5 AC5 20 SO4 C1347 HOH C2095 HOH C2096 HOH C2131 SITE 1 AC6 5 GLY C 88 ALA C 89 GLY C 90 ARG C 257 SITE 2 AC6 5 NAD C1346 SITE 1 AC7 24 HOH C2012 HOH C2013 THR D 117 GLY D 172 SITE 2 AC7 24 ALA D 173 ILE D 174 ASP D 194 VAL D 195 SITE 3 AC7 24 VAL D 228 PRO D 229 MET D 231 THR D 234 SITE 4 AC7 24 THR D 255 ALA D 256 ARG D 257 ASP D 281 SITE 5 AC7 24 HIS D 304 GLY D 306 GLY D 307 SO4 D1347 SITE 6 AC7 24 HOH D2035 HOH D2081 HOH D2082 HOH D2083 SITE 1 AC8 5 GLY D 88 ALA D 89 GLY D 90 ARG D 257 SITE 2 AC8 5 NAD D1346 CRYST1 100.098 110.154 79.836 90.00 90.00 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009990 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012526 0.00000