HEADER TRANSFERASE 07-NOV-08 2W38 TITLE CRYSTAL STRUCTURE OF THE PSEUDAMINIDASE FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIALIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PSEUDAMINIDASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 ATCC: 47085D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSFERASE, SIALIDASE, NEURAMINIDASE, PSEUDAMINIC ACID EXPDTA X-RAY DIFFRACTION AUTHOR G.XU,C.RYAN,M.J.KIEFEL,J.C.WILSON,G.L.TAYLOR REVDAT 5 08-MAY-24 2W38 1 REMARK REVDAT 4 28-JUN-17 2W38 1 REMARK REVDAT 3 24-FEB-09 2W38 1 JRNL REMARK REVDAT 2 03-FEB-09 2W38 1 JRNL REVDAT 1 23-DEC-08 2W38 0 JRNL AUTH G.XU,C.RYAN,M.J.KIEFEL,J.C.WILSON,G.L.TAYLOR JRNL TITL STRUCTURAL STUDIES ON THE PSEUDOMONAS AERUGINOSA JRNL TITL 2 SIALIDASE-LIKE ENZYME PA2794 SUGGEST SUBSTRATE AND JRNL TITL 3 MECHANISTIC VARIATIONS. JRNL REF J.MOL.BIOL. V. 386 828 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19166860 JRNL DOI 10.1016/J.JMB.2008.12.084 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 49985 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7444 - 4.9747 0.95 2814 125 0.1742 0.1774 REMARK 3 2 4.9747 - 3.9505 0.99 2827 147 0.1295 0.1400 REMARK 3 3 3.9505 - 3.4517 1.00 2818 152 0.1540 0.1598 REMARK 3 4 3.4517 - 3.1364 1.00 2782 165 0.1638 0.1856 REMARK 3 5 3.1364 - 2.9117 1.00 2761 161 0.1717 0.2029 REMARK 3 6 2.9117 - 2.7401 1.00 2798 140 0.1757 0.2084 REMARK 3 7 2.7401 - 2.6030 1.00 2799 152 0.1699 0.2058 REMARK 3 8 2.6030 - 2.4897 1.00 2773 165 0.1696 0.2016 REMARK 3 9 2.4897 - 2.3939 1.00 2755 143 0.1691 0.1987 REMARK 3 10 2.3939 - 2.3113 1.00 2765 172 0.1749 0.2147 REMARK 3 11 2.3113 - 2.2390 1.00 2752 156 0.1725 0.2162 REMARK 3 12 2.2390 - 2.1750 1.00 2781 125 0.1890 0.2333 REMARK 3 13 2.1750 - 2.1178 1.00 2767 130 0.1935 0.2081 REMARK 3 14 2.1178 - 2.0661 0.98 2716 143 0.1942 0.2602 REMARK 3 15 2.0661 - 2.0192 0.94 2597 140 0.2102 0.2415 REMARK 3 16 2.0192 - 1.9762 0.87 2366 130 0.2254 0.2321 REMARK 3 17 1.9762 - 1.9367 0.72 2000 111 0.2356 0.2801 REMARK 3 18 1.9367 - 1.9001 0.56 1571 86 0.2700 0.3066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 47.32 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3391 REMARK 3 ANGLE : 1.474 4611 REMARK 3 CHIRALITY : 0.106 493 REMARK 3 PLANARITY : 0.006 593 REMARK 3 DIHEDRAL : 17.485 1131 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2W38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1290038051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50018 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.20 REMARK 200 R MERGE FOR SHELL (I) : 0.31000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE, RESOLVE, DM, ARP/WARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.10000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.10000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.10000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.10000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 63.10000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 63.10000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 63.10000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 63.10000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 63.10000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 63.10000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 63.10000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 63.10000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 63.10000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 63.10000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 63.10000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 63.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 63.10000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 63.10000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 63.10000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 -63.10000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2046 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2088 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2241 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2294 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2353 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2375 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2377 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 THR A 3 REMARK 465 TYR A 4 REMARK 465 PHE A 5 REMARK 465 ASP A 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ILE A 438 O HOH A 2412 1.65 REMARK 500 O HOH A 2025 O HOH A 2287 2.09 REMARK 500 O HOH A 2372 O HOH A 2383 2.13 REMARK 500 NH2 ARG A 10 O HOH A 2004 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 109 C SER A 110 N -0.440 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 VAL A 188 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 GLY A 296 C - N - CA ANGL. DEV. = 13.7 DEGREES REMARK 500 GLY A 296 N - CA - C ANGL. DEV. = 21.9 DEGREES REMARK 500 GLY A 296 CA - C - O ANGL. DEV. = -14.8 DEGREES REMARK 500 GLY A 296 CA - C - N ANGL. DEV. = 15.1 DEGREES REMARK 500 TYR A 297 CA - C - N ANGL. DEV. = -18.3 DEGREES REMARK 500 TYR A 297 O - C - N ANGL. DEV. = 16.7 DEGREES REMARK 500 ARG A 306 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 306 NE - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ARG A 403 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 403 NE - CZ - NH2 ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 49 -144.12 -91.38 REMARK 500 ARG A 78 -130.36 -102.49 REMARK 500 ASN A 181 -93.78 -137.40 REMARK 500 ASP A 190 63.34 32.76 REMARK 500 SER A 232 -132.57 46.12 REMARK 500 ALA A 293 -123.43 54.66 REMARK 500 ALA A 294 43.67 -87.71 REMARK 500 TYR A 297 75.89 66.96 REMARK 500 ARG A 306 -31.62 -141.74 REMARK 500 SER A 381 -158.37 -105.59 REMARK 500 THR A 413 -25.87 -143.72 REMARK 500 ASP A 420 48.84 -152.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 188 GLY A 189 -66.00 REMARK 500 SER A 295 GLY A 296 -49.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2036 DISTANCE = 5.88 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1439 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1440 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1441 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1442 DBREF 2W38 A 1 438 UNP Q9L6G4 Q9L6G4_PSEAE 1 438 SEQRES 1 A 438 MET ASN THR TYR PHE ASP ILE PRO HIS ARG LEU VAL GLY SEQRES 2 A 438 LYS ALA LEU TYR GLU SER TYR TYR ASP HIS PHE GLY GLN SEQRES 3 A 438 MET ASP ILE LEU SER ASP GLY SER LEU TYR LEU ILE TYR SEQRES 4 A 438 ARG ARG ALA THR GLU HIS VAL GLY GLY SER ASP GLY ARG SEQRES 5 A 438 VAL VAL PHE SER LYS LEU GLU GLY GLY ILE TRP SER ALA SEQRES 6 A 438 PRO THR ILE VAL ALA GLN ALA GLY GLY GLN ASP PHE ARG SEQRES 7 A 438 ASP VAL ALA GLY GLY THR MET PRO SER GLY ARG ILE VAL SEQRES 8 A 438 ALA ALA SER THR VAL TYR GLU THR GLY GLU VAL LYS VAL SEQRES 9 A 438 TYR VAL SER ASP ASP SER GLY VAL THR TRP VAL HIS LYS SEQRES 10 A 438 PHE THR LEU ALA ARG GLY GLY ALA ASP TYR ASN PHE ALA SEQRES 11 A 438 HIS GLY LYS SER PHE GLN VAL GLY ALA ARG TYR VAL ILE SEQRES 12 A 438 PRO LEU TYR ALA ALA THR GLY VAL ASN TYR GLU LEU LYS SEQRES 13 A 438 TRP LEU GLU SER SER ASP GLY GLY GLU THR TRP GLY GLU SEQRES 14 A 438 GLY SER THR ILE TYR SER GLY ASN THR PRO TYR ASN GLU SEQRES 15 A 438 THR SER TYR LEU PRO VAL GLY ASP GLY VAL ILE LEU ALA SEQRES 16 A 438 VAL ALA ARG VAL GLY SER GLY ALA GLY GLY ALA LEU ARG SEQRES 17 A 438 GLN PHE ILE SER LEU ASP ASP GLY GLY THR TRP THR ASP SEQRES 18 A 438 GLN GLY ASN VAL THR ALA GLN ASN GLY ASP SER THR ASP SEQRES 19 A 438 ILE LEU VAL ALA PRO SER LEU SER TYR ILE TYR SER GLU SEQRES 20 A 438 GLY GLY THR PRO HIS VAL VAL LEU LEU TYR THR ASN ARG SEQRES 21 A 438 THR THR HIS PHE CYS TYR TYR ARG THR ILE LEU LEU ALA SEQRES 22 A 438 LYS ALA VAL ALA GLY SER SER GLY TRP THR GLU ARG VAL SEQRES 23 A 438 PRO VAL TYR SER ALA PRO ALA ALA SER GLY TYR THR SER SEQRES 24 A 438 GLN VAL VAL LEU GLY GLY ARG ARG ILE LEU GLY ASN LEU SEQRES 25 A 438 PHE ARG GLU THR SER SER THR THR SER GLY ALA TYR GLN SEQRES 26 A 438 PHE GLU VAL TYR LEU GLY GLY VAL PRO ASP PHE GLU SER SEQRES 27 A 438 ASP TRP PHE SER VAL SER SER ASN SER LEU TYR THR LEU SEQRES 28 A 438 SER HIS GLY LEU GLN ARG SER PRO ARG ARG VAL VAL VAL SEQRES 29 A 438 GLU PHE ALA ARG SER SER SER PRO SER THR TRP ASN ILE SEQRES 30 A 438 VAL MET PRO SER TYR PHE ASN ASP GLY GLY HIS LYS GLY SEQRES 31 A 438 SER GLY ALA GLN VAL GLU VAL GLY SER LEU ASN ILE ARG SEQRES 32 A 438 LEU GLY THR GLY ALA ALA VAL TRP GLY THR GLY TYR PHE SEQRES 33 A 438 GLY GLY ILE ASP ASN SER ALA THR THR ARG PHE ALA THR SEQRES 34 A 438 GLY TYR TYR ARG VAL ARG ALA TRP ILE HET GOL A1439 6 HET GOL A1440 6 HET GOL A1441 6 HET GOL A1442 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 4(C3 H8 O3) FORMUL 6 HOH *416(H2 O) HELIX 1 1 LEU A 272 GLY A 278 1 7 HELIX 2 2 SER A 422 ARG A 426 5 5 SHEET 1 AA 4 ALA A 15 LEU A 16 0 SHEET 2 AA 4 THR A 320 VAL A 328 -1 O ALA A 323 N LEU A 16 SHEET 3 AA 4 ARG A 307 SER A 317 -1 O ILE A 308 N VAL A 328 SHEET 4 AA 4 GLY A 296 LEU A 303 -1 O GLY A 296 N PHE A 313 SHEET 1 AB 4 TYR A 21 ILE A 29 0 SHEET 2 AB 4 LEU A 35 ALA A 42 -1 O TYR A 36 N ASP A 28 SHEET 3 AB 4 ARG A 52 GLU A 59 -1 O ARG A 52 N ARG A 41 SHEET 4 AB 4 THR A 67 ALA A 70 -1 O THR A 67 N PHE A 55 SHEET 1 AC 4 TYR A 21 ILE A 29 0 SHEET 2 AC 4 LEU A 35 ALA A 42 -1 O TYR A 36 N ASP A 28 SHEET 3 AC 4 ARG A 52 GLU A 59 -1 O ARG A 52 N ARG A 41 SHEET 4 AC 4 ILE A 62 TRP A 63 -1 O ILE A 62 N GLU A 59 SHEET 1 AD 4 PHE A 77 THR A 84 0 SHEET 2 AD 4 ILE A 90 VAL A 96 -1 O VAL A 91 N GLY A 83 SHEET 3 AD 4 VAL A 102 SER A 107 -1 O LYS A 103 N SER A 94 SHEET 4 AD 4 VAL A 115 LEU A 120 -1 O VAL A 115 N VAL A 106 SHEET 1 AE 3 TYR A 127 ALA A 130 0 SHEET 2 AE 3 ARG A 140 THR A 149 -1 O TYR A 146 N PHE A 129 SHEET 3 AE 3 PHE A 135 VAL A 137 -1 O PHE A 135 N VAL A 142 SHEET 1 AF 4 TYR A 127 ALA A 130 0 SHEET 2 AF 4 ARG A 140 THR A 149 -1 O TYR A 146 N PHE A 129 SHEET 3 AF 4 ASN A 152 SER A 160 -1 O ASN A 152 N THR A 149 SHEET 4 AF 4 GLY A 168 GLY A 176 -1 O GLY A 168 N GLU A 159 SHEET 1 AG 4 TYR A 180 PRO A 187 0 SHEET 2 AG 4 ILE A 193 VAL A 199 -1 O LEU A 194 N LEU A 186 SHEET 3 AG 4 LEU A 207 SER A 212 -1 O ARG A 208 N ALA A 197 SHEET 4 AG 4 THR A 220 ASN A 224 -1 O THR A 220 N ILE A 211 SHEET 1 AH 2 THR A 226 ALA A 227 0 SHEET 2 AH 2 SER A 280 TRP A 282 1 N GLY A 281 O THR A 226 SHEET 1 AI 4 LEU A 236 TYR A 245 0 SHEET 2 AI 4 PRO A 251 ASN A 259 -1 O HIS A 252 N ILE A 244 SHEET 3 AI 4 PHE A 264 LEU A 271 -1 O PHE A 264 N ASN A 259 SHEET 4 AI 4 VAL A 286 SER A 290 -1 O VAL A 286 N TYR A 267 SHEET 1 AJ 3 PHE A 336 GLU A 337 0 SHEET 2 AJ 3 THR A 429 TRP A 437 -1 O ALA A 436 N PHE A 336 SHEET 3 AJ 3 PHE A 341 SER A 344 -1 O PHE A 341 N TYR A 432 SHEET 1 AK 4 PHE A 336 GLU A 337 0 SHEET 2 AK 4 THR A 429 TRP A 437 -1 O ALA A 436 N PHE A 336 SHEET 3 AK 4 ARG A 361 ALA A 367 -1 O ARG A 361 N TRP A 437 SHEET 4 AK 4 ASN A 376 ILE A 377 -1 O ASN A 376 N PHE A 366 SHEET 1 AL 3 LEU A 348 SER A 352 0 SHEET 2 AL 3 ASN A 401 THR A 406 -1 O ILE A 402 N LEU A 351 SHEET 3 AL 3 ALA A 393 VAL A 397 -1 O GLN A 394 N GLY A 405 SHEET 1 AM 2 SER A 381 ASN A 384 0 SHEET 2 AM 2 HIS A 388 SER A 391 -1 O LYS A 389 N PHE A 383 CISPEP 1 GLY A 73 GLY A 74 0 -22.45 SITE 1 AC1 7 GLU A 18 SER A 19 TYR A 20 SER A 347 SITE 2 AC1 7 LEU A 348 TYR A 349 GOL A1442 SITE 1 AC2 8 GLU A 284 ARG A 285 PRO A 287 ARG A 357 SITE 2 AC2 8 SER A 358 SER A 399 HOH A2413 HOH A2414 SITE 1 AC3 8 GLY A 205 VAL A 225 ALA A 227 GLY A 230 SITE 2 AC3 8 ASP A 231 LEU A 236 HOH A2415 HOH A2416 SITE 1 AC4 10 SER A 19 TYR A 20 TYR A 21 THR A 43 SITE 2 AC4 10 THR A 319 LEU A 348 GLY A 418 GOL A1439 SITE 3 AC4 10 HOH A2018 HOH A2303 CRYST1 126.200 126.200 126.200 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007924 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007924 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007924 0.00000