HEADER LYASE 13-NOV-08 2W3N TITLE STRUCTURE AND INHIBITION OF THE CO2-SENSING CARBONIC ANHYDRASE CAN2 TITLE 2 FROM THE PATHOGENIC FUNGUS CRYPTOCOCCUS NEOFORMANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBONIC ANHYDRASE 2; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: CARBONIC ANHYDRASE; COMPND 5 EC: 4.2.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOCOCCUS NEOFORMANS; SOURCE 3 ORGANISM_TAXID: 5207; SOURCE 4 VARIANT: GRUBII; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET151 TOPO KEYWDS BETA-CLASS CARBONIC ANHYDRASE, LYASE, INHIBITION, SULFONAMIDE, KEYWDS 2 CRYPTOCOCCUS NEOFORMANS EXPDTA X-RAY DIFFRACTION AUTHOR C.SCHLICKER,R.A.HALL,D.VULLO,S.MIDDELHAUFE,M.GERTZ,C.T.SUPURAN, AUTHOR 2 F.A.MUEHLSCHLEGEL,C.STEEGBORN REVDAT 4 13-DEC-23 2W3N 1 LINK REVDAT 3 13-JUN-18 2W3N 1 SOURCE JRNL REMARK REVDAT 2 27-JAN-09 2W3N 1 VERSN JRNL REVDAT 1 30-DEC-08 2W3N 0 JRNL AUTH C.SCHLICKER,R.A.HALL,D.VULLO,S.MIDDELHAUFE,M.GERTZ, JRNL AUTH 2 C.T.SUPURAN,F.A.MUHLSCHLEGEL,C.STEEGBORN JRNL TITL STRUCTURE AND INHIBITION OF THE CO2-SENSING CARBONIC JRNL TITL 2 ANHYDRASE CAN2 FROM THE PATHOGENIC FUNGUS CRYPTOCOCCUS JRNL TITL 3 NEOFORMANS. JRNL REF J. MOL. BIOL. V. 385 1207 2009 JRNL REFN ESSN 1089-8638 JRNL PMID 19071134 JRNL DOI 10.1016/J.JMB.2008.11.037 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 44060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2337 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3271 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5263 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 144 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.21000 REMARK 3 B22 (A**2) : 1.36000 REMARK 3 B33 (A**2) : -0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.487 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5408 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7344 ; 1.500 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 674 ; 7.185 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;40.235 ;24.683 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 864 ;16.140 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;18.217 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 801 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4183 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2463 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3690 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 235 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 103 ; 0.223 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.172 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3462 ; 1.521 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5477 ; 2.341 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2185 ; 3.836 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1867 ; 5.783 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2W3N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1290038109. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46398 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 46.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.010 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 1.000 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.00 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1T75 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG3350, 0.2 M AMMONIUM ACETATE, REMARK 280 0.01 M MAGNESIUM ACETATE, 0.05M SODIUM CACODYLATE PH 6.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 88.99000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.29500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 88.99000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.29500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2017 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2025 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 232 REMARK 465 ASP A 233 REMARK 465 ASP A 234 REMARK 465 ARG A 235 REMARK 465 VAL A 236 REMARK 465 PRO A 237 REMARK 465 ARG A 238 REMARK 465 ALA A 239 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 PRO B 10 REMARK 465 SER B 11 REMARK 465 ASP B 12 REMARK 465 GLU B 141 REMARK 465 GLU B 142 REMARK 465 ASN B 143 REMARK 465 ASP B 234 REMARK 465 ARG B 235 REMARK 465 VAL B 236 REMARK 465 PRO B 237 REMARK 465 ARG B 238 REMARK 465 ALA B 239 REMARK 465 MET C 1 REMARK 465 PRO C 2 REMARK 465 PHE C 3 REMARK 465 THR C 140 REMARK 465 GLU C 141 REMARK 465 GLU C 142 REMARK 465 VAL C 232 REMARK 465 ASP C 233 REMARK 465 ASP C 234 REMARK 465 ARG C 235 REMARK 465 VAL C 236 REMARK 465 PRO C 237 REMARK 465 ARG C 238 REMARK 465 ALA C 239 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 9 CD CE NZ REMARK 470 GLU A 48 CD OE1 OE2 REMARK 470 GLU A 50 CD OE1 OE2 REMARK 470 LYS A 182 CD CE NZ REMARK 470 GLU B 6 CG CD OE1 OE2 REMARK 470 ILE B 14 CB CG1 CG2 CD1 REMARK 470 GLU B 50 CD OE1 OE2 REMARK 470 ASP B 135 CG OD1 OD2 REMARK 470 LYS B 182 CD CE NZ REMARK 470 ASP C 15 OD1 OD2 REMARK 470 LYS C 26 CE NZ REMARK 470 LYS C 28 CD CE NZ REMARK 470 GLU C 50 CB CG CD OE1 OE2 REMARK 470 GLU C 175 CD OE1 OE2 REMARK 470 LYS C 182 CE NZ REMARK 470 GLU C 195 CD OE1 OE2 REMARK 470 LYS C 199 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 230 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 3 46.51 -106.25 REMARK 500 VAL B 232 -53.72 -120.92 REMARK 500 ALA C 80 50.44 39.74 REMARK 500 PRO C 144 42.03 -97.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 145 GLY A 146 -147.59 REMARK 500 LEU B 8 LYS B 9 132.17 REMARK 500 ASN C 143 PRO C 144 -149.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1232 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 68 SG REMARK 620 2 HIS A 124 NE2 111.5 REMARK 620 3 CYS A 127 SG 124.8 107.4 REMARK 620 4 ACT A1233 O 105.7 96.1 107.3 REMARK 620 5 ACT A1233 OXT 102.0 97.0 110.5 3.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1234 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 68 SG REMARK 620 2 HIS B 124 NE2 114.3 REMARK 620 3 CYS B 127 SG 121.1 106.1 REMARK 620 4 ACT B1235 OXT 107.4 104.3 101.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1232 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 68 SG REMARK 620 2 HIS C 124 NE2 117.6 REMARK 620 3 CYS C 127 SG 127.7 103.1 REMARK 620 4 ACT C1233 OXT 104.1 93.2 105.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A1232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C1232 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A1233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C1233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1234 DBREF 2W3N A 1 239 UNP Q3I4V7 Q3I4V7_CRYNV 1 239 DBREF 2W3N B 1 239 UNP Q3I4V7 Q3I4V7_CRYNV 1 239 DBREF 2W3N C 1 239 UNP Q3I4V7 Q3I4V7_CRYNV 1 239 SEQRES 1 A 239 MET PRO PHE HIS ALA GLU PRO LEU LYS PRO SER ASP GLU SEQRES 2 A 239 ILE ASP MET ASP LEU GLY HIS SER VAL ALA ALA GLN LYS SEQRES 3 A 239 PHE LYS GLU ILE ARG GLU VAL LEU GLU GLY ASN ARG TYR SEQRES 4 A 239 TRP ALA ARG LYS VAL THR SER GLU GLU PRO GLU PHE MET SEQRES 5 A 239 ALA GLU GLN VAL LYS GLY GLN ALA PRO ASN PHE LEU TRP SEQRES 6 A 239 ILE GLY CYS ALA ASP SER ARG VAL PRO GLU VAL THR ILE SEQRES 7 A 239 MET ALA ARG LYS PRO GLY ASP VAL PHE VAL GLN ARG ASN SEQRES 8 A 239 VAL ALA ASN GLN PHE LYS PRO GLU ASP ASP SER SER GLN SEQRES 9 A 239 ALA LEU LEU ASN TYR ALA ILE MET ASN VAL GLY VAL THR SEQRES 10 A 239 HIS VAL MET VAL VAL GLY HIS THR GLY CYS GLY GLY CYS SEQRES 11 A 239 ILE ALA ALA PHE ASP GLN PRO LEU PRO THR GLU GLU ASN SEQRES 12 A 239 PRO GLY GLY THR PRO LEU VAL ARG TYR LEU GLU PRO ILE SEQRES 13 A 239 ILE ARG LEU LYS HIS SER LEU PRO GLU GLY SER ASP VAL SEQRES 14 A 239 ASN ASP LEU ILE LYS GLU ASN VAL LYS MET ALA VAL LYS SEQRES 15 A 239 ASN VAL VAL ASN SER PRO THR ILE GLN GLY ALA TRP GLU SEQRES 16 A 239 GLN ALA ARG LYS GLY GLU PHE ARG GLU VAL PHE VAL HIS SEQRES 17 A 239 GLY TRP LEU TYR ASP LEU SER THR GLY ASN ILE VAL ASP SEQRES 18 A 239 LEU ASN VAL THR GLN GLY PRO HIS PRO PHE VAL ASP ASP SEQRES 19 A 239 ARG VAL PRO ARG ALA SEQRES 1 B 239 MET PRO PHE HIS ALA GLU PRO LEU LYS PRO SER ASP GLU SEQRES 2 B 239 ILE ASP MET ASP LEU GLY HIS SER VAL ALA ALA GLN LYS SEQRES 3 B 239 PHE LYS GLU ILE ARG GLU VAL LEU GLU GLY ASN ARG TYR SEQRES 4 B 239 TRP ALA ARG LYS VAL THR SER GLU GLU PRO GLU PHE MET SEQRES 5 B 239 ALA GLU GLN VAL LYS GLY GLN ALA PRO ASN PHE LEU TRP SEQRES 6 B 239 ILE GLY CYS ALA ASP SER ARG VAL PRO GLU VAL THR ILE SEQRES 7 B 239 MET ALA ARG LYS PRO GLY ASP VAL PHE VAL GLN ARG ASN SEQRES 8 B 239 VAL ALA ASN GLN PHE LYS PRO GLU ASP ASP SER SER GLN SEQRES 9 B 239 ALA LEU LEU ASN TYR ALA ILE MET ASN VAL GLY VAL THR SEQRES 10 B 239 HIS VAL MET VAL VAL GLY HIS THR GLY CYS GLY GLY CYS SEQRES 11 B 239 ILE ALA ALA PHE ASP GLN PRO LEU PRO THR GLU GLU ASN SEQRES 12 B 239 PRO GLY GLY THR PRO LEU VAL ARG TYR LEU GLU PRO ILE SEQRES 13 B 239 ILE ARG LEU LYS HIS SER LEU PRO GLU GLY SER ASP VAL SEQRES 14 B 239 ASN ASP LEU ILE LYS GLU ASN VAL LYS MET ALA VAL LYS SEQRES 15 B 239 ASN VAL VAL ASN SER PRO THR ILE GLN GLY ALA TRP GLU SEQRES 16 B 239 GLN ALA ARG LYS GLY GLU PHE ARG GLU VAL PHE VAL HIS SEQRES 17 B 239 GLY TRP LEU TYR ASP LEU SER THR GLY ASN ILE VAL ASP SEQRES 18 B 239 LEU ASN VAL THR GLN GLY PRO HIS PRO PHE VAL ASP ASP SEQRES 19 B 239 ARG VAL PRO ARG ALA SEQRES 1 C 239 MET PRO PHE HIS ALA GLU PRO LEU LYS PRO SER ASP GLU SEQRES 2 C 239 ILE ASP MET ASP LEU GLY HIS SER VAL ALA ALA GLN LYS SEQRES 3 C 239 PHE LYS GLU ILE ARG GLU VAL LEU GLU GLY ASN ARG TYR SEQRES 4 C 239 TRP ALA ARG LYS VAL THR SER GLU GLU PRO GLU PHE MET SEQRES 5 C 239 ALA GLU GLN VAL LYS GLY GLN ALA PRO ASN PHE LEU TRP SEQRES 6 C 239 ILE GLY CYS ALA ASP SER ARG VAL PRO GLU VAL THR ILE SEQRES 7 C 239 MET ALA ARG LYS PRO GLY ASP VAL PHE VAL GLN ARG ASN SEQRES 8 C 239 VAL ALA ASN GLN PHE LYS PRO GLU ASP ASP SER SER GLN SEQRES 9 C 239 ALA LEU LEU ASN TYR ALA ILE MET ASN VAL GLY VAL THR SEQRES 10 C 239 HIS VAL MET VAL VAL GLY HIS THR GLY CYS GLY GLY CYS SEQRES 11 C 239 ILE ALA ALA PHE ASP GLN PRO LEU PRO THR GLU GLU ASN SEQRES 12 C 239 PRO GLY GLY THR PRO LEU VAL ARG TYR LEU GLU PRO ILE SEQRES 13 C 239 ILE ARG LEU LYS HIS SER LEU PRO GLU GLY SER ASP VAL SEQRES 14 C 239 ASN ASP LEU ILE LYS GLU ASN VAL LYS MET ALA VAL LYS SEQRES 15 C 239 ASN VAL VAL ASN SER PRO THR ILE GLN GLY ALA TRP GLU SEQRES 16 C 239 GLN ALA ARG LYS GLY GLU PHE ARG GLU VAL PHE VAL HIS SEQRES 17 C 239 GLY TRP LEU TYR ASP LEU SER THR GLY ASN ILE VAL ASP SEQRES 18 C 239 LEU ASN VAL THR GLN GLY PRO HIS PRO PHE VAL ASP ASP SEQRES 19 C 239 ARG VAL PRO ARG ALA HET ZN A1232 1 HET ACT A1233 8 HET GOL A1234 6 HET ZN B1234 1 HET ACT B1235 4 HET ZN C1232 1 HET ACT C1233 4 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 ZN 3(ZN 2+) FORMUL 5 ACT 3(C2 H3 O2 1-) FORMUL 6 GOL C3 H8 O3 FORMUL 11 HOH *144(H2 O) HELIX 1 1 LYS A 9 GLY A 19 1 11 HELIX 2 2 SER A 21 PHE A 27 1 7 HELIX 3 3 PHE A 27 GLU A 48 1 22 HELIX 4 4 GLU A 50 GLY A 58 1 9 HELIX 5 5 PRO A 74 MET A 79 1 6 HELIX 6 6 VAL A 92 GLN A 95 5 4 HELIX 7 7 ASP A 100 ASN A 113 1 14 HELIX 8 8 CYS A 127 ASP A 135 1 9 HELIX 9 9 THR A 147 LEU A 153 1 7 HELIX 10 10 LEU A 153 SER A 162 1 10 HELIX 11 11 ASP A 168 ASN A 186 1 19 HELIX 12 12 SER A 187 LYS A 199 1 13 HELIX 13 13 ASP B 17 HIS B 20 5 4 HELIX 14 14 SER B 21 PHE B 27 1 7 HELIX 15 15 PHE B 27 GLU B 48 1 22 HELIX 16 16 GLU B 50 GLY B 58 1 9 HELIX 17 17 PRO B 74 MET B 79 1 6 HELIX 18 18 VAL B 92 GLN B 95 5 4 HELIX 19 19 ASP B 100 ASN B 113 1 14 HELIX 20 20 CYS B 127 ASP B 135 1 9 HELIX 21 21 THR B 147 LEU B 153 1 7 HELIX 22 22 LEU B 153 HIS B 161 1 9 HELIX 23 23 ASP B 168 ASN B 186 1 19 HELIX 24 24 SER B 187 LYS B 199 1 13 HELIX 25 25 LYS C 9 LEU C 18 1 10 HELIX 26 26 SER C 21 PHE C 27 1 7 HELIX 27 27 PHE C 27 GLU C 48 1 22 HELIX 28 28 GLU C 50 GLY C 58 1 9 HELIX 29 29 PRO C 74 MET C 79 1 6 HELIX 30 30 VAL C 92 GLN C 95 5 4 HELIX 31 31 ASP C 100 ASN C 113 1 14 HELIX 32 32 CYS C 127 ASP C 135 1 9 HELIX 33 33 THR C 147 LEU C 153 1 7 HELIX 34 34 LEU C 153 LEU C 163 1 11 HELIX 35 35 ASP C 168 ASN C 186 1 19 HELIX 36 36 SER C 187 LYS C 199 1 13 SHEET 1 AA 5 VAL A 86 ASN A 91 0 SHEET 2 AA 5 PHE A 63 CYS A 68 1 O PHE A 63 N PHE A 87 SHEET 3 AA 5 HIS A 118 HIS A 124 1 O HIS A 118 N LEU A 64 SHEET 4 AA 5 PHE A 206 TYR A 212 1 O PHE A 206 N VAL A 119 SHEET 5 AA 5 ILE A 219 ASP A 221 -1 O VAL A 220 N LEU A 211 SHEET 1 BA 5 VAL B 86 ASN B 91 0 SHEET 2 BA 5 PHE B 63 CYS B 68 1 O PHE B 63 N PHE B 87 SHEET 3 BA 5 HIS B 118 HIS B 124 1 O HIS B 118 N LEU B 64 SHEET 4 BA 5 PHE B 206 TYR B 212 1 O PHE B 206 N VAL B 119 SHEET 5 BA 5 ILE B 219 ASP B 221 -1 O VAL B 220 N LEU B 211 SHEET 1 CA 5 VAL C 86 ASN C 91 0 SHEET 2 CA 5 PHE C 63 CYS C 68 1 O PHE C 63 N PHE C 87 SHEET 3 CA 5 HIS C 118 HIS C 124 1 O HIS C 118 N LEU C 64 SHEET 4 CA 5 PHE C 206 TYR C 212 1 O PHE C 206 N VAL C 119 SHEET 5 CA 5 ILE C 219 ASP C 221 -1 O VAL C 220 N LEU C 211 LINK SG CYS A 68 ZN ZN A1232 1555 1555 2.20 LINK NE2 HIS A 124 ZN ZN A1232 1555 1555 2.20 LINK SG CYS A 127 ZN ZN A1232 1555 1555 2.37 LINK ZN ZN A1232 O AACT A1233 1555 1555 1.89 LINK ZN ZN A1232 OXTBACT A1233 1555 1555 2.00 LINK SG CYS B 68 ZN ZN B1234 1555 1555 2.23 LINK NE2 HIS B 124 ZN ZN B1234 1555 1555 2.09 LINK SG CYS B 127 ZN ZN B1234 1555 1555 2.43 LINK ZN ZN B1234 OXT ACT B1235 1555 1555 2.15 LINK SG CYS C 68 ZN ZN C1232 1555 1555 2.23 LINK NE2 HIS C 124 ZN ZN C1232 1555 1555 2.11 LINK SG CYS C 127 ZN ZN C1232 1555 1555 2.46 LINK ZN ZN C1232 OXT ACT C1233 1555 1555 1.95 CISPEP 1 PRO A 2 PHE A 3 0 23.67 CISPEP 2 PRO A 144 GLY A 145 0 -11.57 SITE 1 AC1 4 CYS A 68 HIS A 124 CYS A 127 ACT A1233 SITE 1 AC2 4 CYS B 68 HIS B 124 CYS B 127 ACT B1235 SITE 1 AC3 4 CYS C 68 HIS C 124 CYS C 127 ACT C1233 SITE 1 AC4 10 GLN A 59 CYS A 68 ASP A 70 TYR A 109 SITE 2 AC4 10 HIS A 124 GLY A 126 CYS A 127 GLY A 128 SITE 3 AC4 10 GLY A 129 ZN A1232 SITE 1 AC5 10 CYS B 68 ASP B 70 HIS B 124 CYS B 127 SITE 2 AC5 10 GLY B 128 GLY B 129 ZN B1234 GLN C 59 SITE 3 AC5 10 PHE C 87 TYR C 109 SITE 1 AC6 8 GLN B 59 CYS C 68 ASP C 70 HIS C 124 SITE 2 AC6 8 CYS C 127 GLY C 128 GLY C 129 ZN C1232 SITE 1 AC7 5 LYS A 97 ASP A 101 SER A 102 TYR A 152 SITE 2 AC7 5 HOH A2031 CRYST1 177.980 56.590 83.220 90.00 116.58 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005619 0.000000 0.002811 0.00000 SCALE2 0.000000 0.017671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013436 0.00000