HEADER HYDROLASE 25-NOV-08 2W4D TITLE ACYLPHOSPHATASE VARIANT G91A FROM PYROCOCCUS HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYLPHOSPHATASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: RESIDUES 2-91; COMPND 5 SYNONYM: ACYLPHOSPHATE PHOSPHOHYDROLASE; COMPND 6 EC: 3.6.1.7; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 STRAIN: JCM9974; SOURCE 5 ATCC: 700860; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.Y.LAM,K.B.WONG REVDAT 5 13-DEC-23 2W4D 1 REMARK LINK REVDAT 4 24-JAN-18 2W4D 1 SOURCE REVDAT 3 01-FEB-12 2W4D 1 JRNL REMARK VERSN REVDAT 2 17-NOV-10 2W4D 1 REMARK HET HETNAM FORMUL REVDAT 2 2 1 CRYST1 REVDAT 1 22-DEC-09 2W4D 0 JRNL AUTH S.Y.LAM,R.C.Y.YEUNG,T.YU,K.SZE,K.B.WONG JRNL TITL A RIGIDIFYING SALT-BRIDGE FAVORS THE ACTIVITY OF JRNL TITL 2 THERMOPHILIC ENZYME AT HIGH TEMPERATURES AT THE EXPENSE OF JRNL TITL 3 LOW-TEMPERATURE ACTIVITY. JRNL REF PLOS BIOL. V. 9 1027 2011 JRNL REFN ISSN 1544-9173 JRNL PMID 21423654 JRNL DOI 10.1371/JOURNAL.PBIO.1001027 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.Y.CHEUNG,M.D.ALLEN,M.BYCROFT,K.B.WONG REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 2 AN ACYLPHOSPHATASE FROM THE HYPERTHERMOPHILIC ARCHAEON REMARK 1 TITL 3 PYROCOCCUS HORIKOSHII REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 60 1308 2004 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 15213401 REMARK 1 DOI 10.1107/S0907444904010996 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.CHEUNG,S.Y.LAM,W.CHU,M.D.ALLEN,M.BYCROFT,K.WONG REMARK 1 TITL CRYSTAL STRUCTURE OF A HYPERTHERMOPHILIC ARCHAEAL REMARK 1 TITL 2 ACYLPHOSPHATASE FROM PYROCOCCUS HORIKOSHII--STRUCTURAL REMARK 1 TITL 3 INSIGHTS INTO ENZYMATIC CATALYSIS, THERMOSTABILITY, AND REMARK 1 TITL 4 DIMERIZATION. REMARK 1 REF BIOCHEMISTRY V. 44 4601 2005 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 15779887 REMARK 1 DOI 10.1021/BI047832K REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1417720.600 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 24696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1253 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3789 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 192 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.024 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4308 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 125 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.27000 REMARK 3 B22 (A**2) : -7.08000 REMARK 3 B33 (A**2) : -2.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.38 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.750 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 39.35 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2W4D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1290032518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 289 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24753 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 44.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 2.920 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.74 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1W2I REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.9MG/ML PROTEIN, 0.6M NA/K GRID REMARK 280 SCREEN, PH8.5, CRYOPROTECTANT: 25% GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.68750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 76.76300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.68750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 76.76300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLY 91 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLY 91 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN C, GLY 91 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN D, GLY 91 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN E, GLY 91 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN F, GLY 91 TO ALA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG LYS F 29 O HOH F 2007 1.34 REMARK 500 CE LYS F 29 O HOH F 2008 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR C 72 O PRO F 40 4545 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN E 64 -60.18 -102.58 REMARK 500 GLN F 64 -60.10 -103.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1093 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 12 O REMARK 620 2 VAL A 14 N 59.0 REMARK 620 3 GLN A 15 N 112.3 54.0 REMARK 620 4 GLY A 42 O 90.1 107.0 99.4 REMARK 620 5 HOH A2003 O 97.2 63.4 61.9 161.3 REMARK 620 6 GLY E 12 O 120.4 157.9 125.1 95.0 96.0 REMARK 620 7 HOH E2007 O 46.7 91.0 138.2 113.9 83.2 78.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1092 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 64 O REMARK 620 2 GLN A 64 OE1 67.6 REMARK 620 3 PRO A 66 O 81.4 136.4 REMARK 620 4 PRO A 67 O 145.2 145.7 65.6 REMARK 620 5 ALA A 69 O 87.0 120.9 85.5 80.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B1092 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 64 OE1 REMARK 620 2 GLN B 64 O 73.2 REMARK 620 3 PRO B 66 O 140.7 78.9 REMARK 620 4 PRO B 67 O 146.0 140.8 66.0 REMARK 620 5 ALA B 69 O 119.6 81.6 82.1 76.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C1092 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN C 64 O REMARK 620 2 GLN C 64 OE1 68.5 REMARK 620 3 PRO C 66 O 84.4 142.4 REMARK 620 4 PRO C 67 O 146.7 144.8 66.0 REMARK 620 5 ALA C 69 O 86.9 118.1 84.5 75.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D1092 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN D 64 OE1 REMARK 620 2 GLN D 64 O 74.1 REMARK 620 3 PRO D 66 O 144.6 83.4 REMARK 620 4 PRO D 67 O 139.6 146.3 66.7 REMARK 620 5 ALA D 69 O 118.9 83.6 84.4 78.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K F1092 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN F 64 O REMARK 620 2 GLN F 64 OE1 71.6 REMARK 620 3 PRO F 66 O 82.7 137.4 REMARK 620 4 PRO F 67 O 146.0 141.4 66.1 REMARK 620 5 ALA F 69 O 87.2 125.5 85.2 77.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K F 1092 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K D 1092 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1092 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K C 1092 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 1092 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 1093 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 1093 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 E 1092 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1094 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 1093 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 D 1093 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 F 1093 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1095 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1V3Z RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ACYLPHOSPHATASE FROM PYROCOCCUSHORIKOSHII REMARK 900 RELATED ID: 1W2I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTUORE OF ACYLPHOSPHATASE FROM PYROCOCCUS HORIKOSHII REMARK 900 COMPLEXED WITH FORMATE REMARK 900 RELATED ID: 2W4C RELATED DB: PDB REMARK 900 HUMAN COMMON-TYPE ACYLPHOSPHATASE VARIANT, A99 DBREF 2W4D A 2 91 UNP P84142 ACYP_PYRHO 2 91 DBREF 2W4D B 2 91 UNP P84142 ACYP_PYRHO 2 91 DBREF 2W4D C 2 91 UNP P84142 ACYP_PYRHO 2 91 DBREF 2W4D D 2 91 UNP P84142 ACYP_PYRHO 2 91 DBREF 2W4D E 2 91 UNP P84142 ACYP_PYRHO 2 91 DBREF 2W4D F 2 91 UNP P84142 ACYP_PYRHO 2 91 SEQADV 2W4D ALA A 91 UNP P84142 GLY 91 ENGINEERED MUTATION SEQADV 2W4D ALA B 91 UNP P84142 GLY 91 ENGINEERED MUTATION SEQADV 2W4D ALA C 91 UNP P84142 GLY 91 ENGINEERED MUTATION SEQADV 2W4D ALA D 91 UNP P84142 GLY 91 ENGINEERED MUTATION SEQADV 2W4D ALA E 91 UNP P84142 GLY 91 ENGINEERED MUTATION SEQADV 2W4D ALA F 91 UNP P84142 GLY 91 ENGINEERED MUTATION SEQRES 1 A 90 ALA ILE VAL ARG ALA HIS LEU LYS ILE TYR GLY ARG VAL SEQRES 2 A 90 GLN GLY VAL GLY PHE ARG TRP SER MET GLN ARG GLU ALA SEQRES 3 A 90 ARG LYS LEU GLY VAL ASN GLY TRP VAL ARG ASN LEU PRO SEQRES 4 A 90 ASP GLY SER VAL GLU ALA VAL LEU GLU GLY ASP GLU GLU SEQRES 5 A 90 ARG VAL GLU ALA LEU ILE GLY TRP ALA HIS GLN GLY PRO SEQRES 6 A 90 PRO LEU ALA ARG VAL THR ARG VAL GLU VAL LYS TRP GLU SEQRES 7 A 90 GLN PRO LYS GLY GLU LYS GLY PHE ARG ILE VAL ALA SEQRES 1 B 90 ALA ILE VAL ARG ALA HIS LEU LYS ILE TYR GLY ARG VAL SEQRES 2 B 90 GLN GLY VAL GLY PHE ARG TRP SER MET GLN ARG GLU ALA SEQRES 3 B 90 ARG LYS LEU GLY VAL ASN GLY TRP VAL ARG ASN LEU PRO SEQRES 4 B 90 ASP GLY SER VAL GLU ALA VAL LEU GLU GLY ASP GLU GLU SEQRES 5 B 90 ARG VAL GLU ALA LEU ILE GLY TRP ALA HIS GLN GLY PRO SEQRES 6 B 90 PRO LEU ALA ARG VAL THR ARG VAL GLU VAL LYS TRP GLU SEQRES 7 B 90 GLN PRO LYS GLY GLU LYS GLY PHE ARG ILE VAL ALA SEQRES 1 C 90 ALA ILE VAL ARG ALA HIS LEU LYS ILE TYR GLY ARG VAL SEQRES 2 C 90 GLN GLY VAL GLY PHE ARG TRP SER MET GLN ARG GLU ALA SEQRES 3 C 90 ARG LYS LEU GLY VAL ASN GLY TRP VAL ARG ASN LEU PRO SEQRES 4 C 90 ASP GLY SER VAL GLU ALA VAL LEU GLU GLY ASP GLU GLU SEQRES 5 C 90 ARG VAL GLU ALA LEU ILE GLY TRP ALA HIS GLN GLY PRO SEQRES 6 C 90 PRO LEU ALA ARG VAL THR ARG VAL GLU VAL LYS TRP GLU SEQRES 7 C 90 GLN PRO LYS GLY GLU LYS GLY PHE ARG ILE VAL ALA SEQRES 1 D 90 ALA ILE VAL ARG ALA HIS LEU LYS ILE TYR GLY ARG VAL SEQRES 2 D 90 GLN GLY VAL GLY PHE ARG TRP SER MET GLN ARG GLU ALA SEQRES 3 D 90 ARG LYS LEU GLY VAL ASN GLY TRP VAL ARG ASN LEU PRO SEQRES 4 D 90 ASP GLY SER VAL GLU ALA VAL LEU GLU GLY ASP GLU GLU SEQRES 5 D 90 ARG VAL GLU ALA LEU ILE GLY TRP ALA HIS GLN GLY PRO SEQRES 6 D 90 PRO LEU ALA ARG VAL THR ARG VAL GLU VAL LYS TRP GLU SEQRES 7 D 90 GLN PRO LYS GLY GLU LYS GLY PHE ARG ILE VAL ALA SEQRES 1 E 90 ALA ILE VAL ARG ALA HIS LEU LYS ILE TYR GLY ARG VAL SEQRES 2 E 90 GLN GLY VAL GLY PHE ARG TRP SER MET GLN ARG GLU ALA SEQRES 3 E 90 ARG LYS LEU GLY VAL ASN GLY TRP VAL ARG ASN LEU PRO SEQRES 4 E 90 ASP GLY SER VAL GLU ALA VAL LEU GLU GLY ASP GLU GLU SEQRES 5 E 90 ARG VAL GLU ALA LEU ILE GLY TRP ALA HIS GLN GLY PRO SEQRES 6 E 90 PRO LEU ALA ARG VAL THR ARG VAL GLU VAL LYS TRP GLU SEQRES 7 E 90 GLN PRO LYS GLY GLU LYS GLY PHE ARG ILE VAL ALA SEQRES 1 F 90 ALA ILE VAL ARG ALA HIS LEU LYS ILE TYR GLY ARG VAL SEQRES 2 F 90 GLN GLY VAL GLY PHE ARG TRP SER MET GLN ARG GLU ALA SEQRES 3 F 90 ARG LYS LEU GLY VAL ASN GLY TRP VAL ARG ASN LEU PRO SEQRES 4 F 90 ASP GLY SER VAL GLU ALA VAL LEU GLU GLY ASP GLU GLU SEQRES 5 F 90 ARG VAL GLU ALA LEU ILE GLY TRP ALA HIS GLN GLY PRO SEQRES 6 F 90 PRO LEU ALA ARG VAL THR ARG VAL GLU VAL LYS TRP GLU SEQRES 7 F 90 GLN PRO LYS GLY GLU LYS GLY PHE ARG ILE VAL ALA HET K A1092 1 HET K A1093 1 HET PO4 A1094 5 HET PO4 A1095 5 HET K B1092 1 HET PO4 B1093 5 HET K C1092 1 HET PO4 C1093 5 HET K D1092 1 HET PO4 D1093 5 HET PO4 E1092 5 HET K F1092 1 HET PO4 F1093 5 HETNAM K POTASSIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 7 K 6(K 1+) FORMUL 9 PO4 7(O4 P 3-) FORMUL 20 HOH *125(H2 O) HELIX 1 1 GLY A 18 GLY A 31 1 14 HELIX 2 2 GLU A 52 HIS A 63 1 12 HELIX 3 3 GLY B 18 GLY B 31 1 14 HELIX 4 4 GLU B 52 HIS B 63 1 12 HELIX 5 5 GLY C 18 GLY C 31 1 14 HELIX 6 6 GLU C 52 HIS C 63 1 12 HELIX 7 7 GLY D 18 GLY D 31 1 14 HELIX 8 8 GLU D 52 HIS D 63 1 12 HELIX 9 9 GLY E 18 GLY E 31 1 14 HELIX 10 10 GLU E 52 HIS E 63 1 12 HELIX 11 11 GLY F 18 GLY F 31 1 14 HELIX 12 12 GLU F 52 HIS F 63 1 12 SHEET 1 AA 5 ARG A 70 GLU A 79 0 SHEET 2 AA 5 ILE A 3 ARG A 13 -1 O ARG A 5 N GLU A 79 SHEET 3 AA 5 VAL A 44 ASP A 51 -1 O VAL A 44 N ILE A 10 SHEET 4 AA 5 ASN A 33 ASN A 38 -1 O ASN A 33 N GLU A 49 SHEET 5 AA 5 PHE A 87 ILE A 89 1 O ARG A 88 N VAL A 36 SHEET 1 BA 5 ARG B 70 GLU B 79 0 SHEET 2 BA 5 ILE B 3 ARG B 13 -1 O ARG B 5 N GLU B 79 SHEET 3 BA 5 VAL B 44 ASP B 51 -1 O VAL B 44 N ILE B 10 SHEET 4 BA 5 ASN B 33 ASN B 38 -1 O ASN B 33 N GLU B 49 SHEET 5 BA 5 PHE B 87 ILE B 89 1 O ARG B 88 N VAL B 36 SHEET 1 CA 5 ARG C 70 GLU C 79 0 SHEET 2 CA 5 ILE C 3 ARG C 13 -1 O ARG C 5 N GLU C 79 SHEET 3 CA 5 VAL C 44 ASP C 51 -1 O VAL C 44 N ILE C 10 SHEET 4 CA 5 ASN C 33 ASN C 38 -1 O ASN C 33 N GLU C 49 SHEET 5 CA 5 PHE C 87 ILE C 89 1 O ARG C 88 N VAL C 36 SHEET 1 DA 5 ARG D 70 GLU D 79 0 SHEET 2 DA 5 ILE D 3 ARG D 13 -1 O ARG D 5 N GLU D 79 SHEET 3 DA 5 VAL D 44 ASP D 51 -1 O VAL D 44 N ILE D 10 SHEET 4 DA 5 ASN D 33 ASN D 38 -1 O ASN D 33 N GLU D 49 SHEET 5 DA 5 PHE D 87 ILE D 89 1 O ARG D 88 N VAL D 36 SHEET 1 EA 5 ARG E 70 GLU E 79 0 SHEET 2 EA 5 ILE E 3 ARG E 13 -1 O ARG E 5 N GLU E 79 SHEET 3 EA 5 VAL E 44 ASP E 51 -1 O VAL E 44 N ILE E 10 SHEET 4 EA 5 ASN E 33 ASN E 38 -1 O ASN E 33 N GLU E 49 SHEET 5 EA 5 PHE E 87 ILE E 89 1 O ARG E 88 N VAL E 36 SHEET 1 FA 5 ARG F 70 GLU F 79 0 SHEET 2 FA 5 ILE F 3 ARG F 13 -1 O ARG F 5 N GLU F 79 SHEET 3 FA 5 VAL F 44 ASP F 51 -1 O VAL F 44 N ILE F 10 SHEET 4 FA 5 ASN F 33 ASN F 38 -1 O ASN F 33 N GLU F 49 SHEET 5 FA 5 PHE F 87 ILE F 89 1 O ARG F 88 N VAL F 36 LINK O GLY A 12 K K A1093 1555 1555 3.28 LINK N VAL A 14 K K A1093 1555 1555 3.17 LINK N GLN A 15 K K A1093 1555 1555 3.09 LINK O GLY A 42 K K A1093 1555 1555 3.16 LINK O GLN A 64 K K A1092 1555 1555 3.03 LINK OE1 GLN A 64 K K A1092 1555 1555 3.31 LINK O PRO A 66 K K A1092 1555 1555 3.10 LINK O PRO A 67 K K A1092 1555 1555 3.27 LINK O ALA A 69 K K A1092 1555 1555 2.90 LINK K K A1093 O HOH A2003 1555 1555 3.48 LINK K K A1093 O GLY E 12 1555 1555 2.96 LINK K K A1093 O HOH E2007 1555 1555 3.32 LINK OE1 GLN B 64 K K B1092 1555 1555 3.28 LINK O GLN B 64 K K B1092 1555 1555 3.11 LINK O PRO B 66 K K B1092 1555 1555 3.08 LINK O PRO B 67 K K B1092 1555 1555 3.25 LINK O ALA B 69 K K B1092 1555 1555 3.09 LINK O GLN C 64 K K C1092 1555 1555 2.95 LINK OE1 GLN C 64 K K C1092 1555 1555 3.09 LINK O PRO C 66 K K C1092 1555 1555 3.02 LINK O PRO C 67 K K C1092 1555 1555 3.35 LINK O ALA C 69 K K C1092 1555 1555 3.00 LINK OE1 GLN D 64 K K D1092 1555 1555 3.11 LINK O GLN D 64 K K D1092 1555 1555 3.03 LINK O PRO D 66 K K D1092 1555 1555 2.98 LINK O PRO D 67 K K D1092 1555 1555 3.29 LINK O ALA D 69 K K D1092 1555 1555 3.04 LINK O GLN F 64 K K F1092 1555 1555 2.98 LINK OE1 GLN F 64 K K F1092 1555 1555 3.17 LINK O PRO F 66 K K F1092 1555 1555 3.05 LINK O PRO F 67 K K F1092 1555 1555 3.31 LINK O ALA F 69 K K F1092 1555 1555 2.96 SITE 1 AC1 5 GLN F 64 GLY F 65 PRO F 66 PRO F 67 SITE 2 AC1 5 ALA F 69 SITE 1 AC2 5 GLN D 64 GLY D 65 PRO D 66 PRO D 67 SITE 2 AC2 5 ALA D 69 SITE 1 AC3 4 GLN A 64 PRO A 66 PRO A 67 ALA A 69 SITE 1 AC4 5 GLN C 64 GLY C 65 PRO C 66 PRO C 67 SITE 2 AC4 5 ALA C 69 SITE 1 AC5 4 GLN B 64 PRO B 66 PRO B 67 ALA B 69 SITE 1 AC6 5 GLY A 12 VAL A 14 GLN A 15 GLY A 42 SITE 2 AC6 5 GLY E 12 SITE 1 AC7 10 VAL B 14 GLN B 15 GLY B 16 VAL B 17 SITE 2 AC7 10 GLY B 18 PHE B 19 ARG B 20 ASN B 38 SITE 3 AC7 10 HOH B2019 HOH B2020 SITE 1 AC8 9 VAL E 14 GLN E 15 GLY E 16 VAL E 17 SITE 2 AC8 9 GLY E 18 PHE E 19 ARG E 20 ASN E 38 SITE 3 AC8 9 HOH E2019 SITE 1 AC9 8 GLY A 16 VAL A 17 GLY A 18 PHE A 19 SITE 2 AC9 8 ARG A 20 ASN A 38 HOH A2017 HOH A2018 SITE 1 BC1 9 VAL C 14 GLY C 16 VAL C 17 GLY C 18 SITE 2 BC1 9 PHE C 19 ARG C 20 ASN C 38 HOH C2002 SITE 3 BC1 9 HOH C2020 SITE 1 BC2 10 VAL D 14 GLY D 16 VAL D 17 GLY D 18 SITE 2 BC2 10 PHE D 19 ARG D 20 ASN D 38 HOH D2007 SITE 3 BC2 10 HOH D2023 HOH D2024 SITE 1 BC3 10 VAL F 14 GLN F 15 GLY F 16 VAL F 17 SITE 2 BC3 10 GLY F 18 PHE F 19 ARG F 20 ASN F 38 SITE 3 BC3 10 HOH F2022 HOH F2023 SITE 1 BC4 3 LYS A 85 ARG B 28 ALA F 2 CRYST1 87.375 153.526 46.041 90.00 90.00 90.00 P 21 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011445 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006514 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021720 0.00000