HEADER HYDROLASE 28-NOV-08 2W4M TITLE THE CRYSTAL STRUCTURE OF HUMAN N-ACETYLNEURAMINIC ACID PHOSPHATASE, TITLE 2 NANP COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACYLNEURAMINATE-9-PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NEU5AC-9-PASE, HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN- COMPND 5 CONTAINING PROTEIN 4, NANP; COMPND 6 EC: 3.1.3.29; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS N-ACETYLNEURAMINATE, NEU5AC-9- PHOSPHATE, CARBOHYDRATE METABOLISM, N- KEYWDS 2 ACETYLNEURAMINIC ACID PHOSPHATASE, NANP, HDHD4, HYDROLASE, KEYWDS 3 MAGNESIUM, SIALIC ACID EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,R.COCKING,W.W.YUE,A.C.W.PIKE,A.ROOS,J.R.C.MUNIZ,F.VON AUTHOR 2 DELFT,C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS,U.OPPERMANN REVDAT 5 13-DEC-23 2W4M 1 LINK REVDAT 4 08-MAY-19 2W4M 1 REMARK REVDAT 3 24-JAN-18 2W4M 1 JRNL REVDAT 2 13-JUL-11 2W4M 1 VERSN REVDAT 1 23-DEC-08 2W4M 0 JRNL AUTH E.UGOCHUKWU,R.COCKING,W.W.YUE,A.C.W.PIKE,A.ROOS,J.R.C.MUNIZ, JRNL AUTH 2 F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH,J.WEIGELT,A.EDWARDS, JRNL AUTH 3 U.OPPERMANN JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN N-ACETYLNEURAMINIC ACID JRNL TITL 2 PHOSPHATASE, NANP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0055 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1043 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1416 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1951 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.20000 REMARK 3 B22 (A**2) : 2.20000 REMARK 3 B33 (A**2) : -3.30000 REMARK 3 B12 (A**2) : 1.10000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.209 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.328 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1997 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1337 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2705 ; 1.488 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3283 ; 0.881 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 251 ; 6.155 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;40.071 ;24.884 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;15.834 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;22.115 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 310 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2197 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 378 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1245 ; 1.848 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2007 ; 3.336 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 752 ; 6.377 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 697 ; 8.616 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): -55.6777 25.4355 7.0787 REMARK 3 T TENSOR REMARK 3 T11: 0.1381 T22: 0.0946 REMARK 3 T33: 0.0401 T12: 0.0007 REMARK 3 T13: 0.0521 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 1.6600 L22: 4.0651 REMARK 3 L33: 2.2404 L12: 0.5354 REMARK 3 L13: 0.2234 L23: -0.1264 REMARK 3 S TENSOR REMARK 3 S11: -0.0161 S12: -0.0099 S13: -0.0771 REMARK 3 S21: -0.1543 S22: -0.0148 S23: -0.2937 REMARK 3 S31: 0.2998 S32: 0.1142 S33: 0.0309 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2W4M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1290038218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99988 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92013 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 35.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GFH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M NA_PHOSPHATE_(NA_H2_PO4)-4M, REMARK 280 0.16M K_PHOSPHATE_(K2_H_PO4)-4M AT 20 DEGREES C, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.70000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.85000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.85000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 2160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 24.85000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 SER A 245 REMARK 465 MET A 246 REMARK 465 SER A 247 REMARK 465 THR A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 4 OG REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 26 NH1 NH2 REMARK 470 LYS A 91 CD CE NZ REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 LYS A 211 NZ REMARK 470 LYS A 218 CE NZ REMARK 470 SER A 219 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 60 CB CYS A 60 SG -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 112.19 -163.33 REMARK 500 LEU A 13 -66.16 -104.40 REMARK 500 LYS A 42 -134.00 -91.56 REMARK 500 THR A 193 -65.35 -108.90 REMARK 500 SER A 219 31.46 -86.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1245 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 12 OD2 REMARK 620 2 ASP A 14 O 80.2 REMARK 620 3 ASP A 189 OD1 74.3 91.4 REMARK 620 4 PO4 A1249 O3 72.0 106.2 138.3 REMARK 620 5 HOH A2075 O 78.2 156.9 75.0 74.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A1245 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1246 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1247 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1248 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A1249 DBREF 2W4M A -21 0 PDB 2W4M 2W4M -21 0 DBREF 2W4M A 1 248 UNP Q8TBE9 NANP_HUMAN 1 248 SEQRES 1 A 270 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 270 GLY THR GLU ASN LEU TYR PHE GLN SER MET GLY LEU SER SEQRES 3 A 270 ARG VAL ARG ALA VAL PHE PHE ASP LEU ASP ASN THR LEU SEQRES 4 A 270 ILE ASP THR ALA GLY ALA SER ARG ARG GLY MET LEU GLU SEQRES 5 A 270 VAL ILE LYS LEU LEU GLN SER LYS TYR HIS TYR LYS GLU SEQRES 6 A 270 GLU ALA GLU ILE ILE CYS ASP LYS VAL GLN VAL LYS LEU SEQRES 7 A 270 SER LYS GLU CYS PHE HIS PRO TYR ASN THR CYS ILE THR SEQRES 8 A 270 ASP LEU ARG THR SER HIS TRP GLU GLU ALA ILE GLN GLU SEQRES 9 A 270 THR LYS GLY GLY ALA ALA ASN ARG LYS LEU ALA GLU GLU SEQRES 10 A 270 CYS TYR PHE LEU TRP LYS SER THR ARG LEU GLN HIS MET SEQRES 11 A 270 THR LEU ALA GLU ASP VAL LYS ALA MET LEU THR GLU LEU SEQRES 12 A 270 ARG LYS GLU VAL ARG LEU LEU LEU LEU THR ASN GLY ASP SEQRES 13 A 270 ARG GLN THR GLN ARG GLU LYS ILE GLU ALA CYS ALA CYS SEQRES 14 A 270 GLN SER TYR PHE ASP ALA VAL VAL VAL GLY GLY GLU GLN SEQRES 15 A 270 ARG GLU GLU LYS PRO ALA PRO SER ILE PHE TYR TYR CYS SEQRES 16 A 270 CYS ASN LEU LEU GLY VAL GLN PRO GLY ASP CYS VAL MET SEQRES 17 A 270 VAL GLY ASP THR LEU GLU THR ASP ILE GLN GLY GLY LEU SEQRES 18 A 270 ASN ALA GLY LEU LYS ALA THR VAL TRP ILE ASN LYS ASN SEQRES 19 A 270 GLY ILE VAL PRO LEU LYS SER SER PRO VAL PRO HIS TYR SEQRES 20 A 270 MET VAL SER SER VAL LEU GLU LEU PRO ALA LEU LEU GLN SEQRES 21 A 270 SER ILE ASP CYS LYS VAL SER MET SER THR HET NA A1245 1 HET CL A1246 1 HET CL A1247 1 HET PO4 A1248 5 HET PO4 A1249 5 HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETNAM PO4 PHOSPHATE ION FORMUL 2 NA NA 1+ FORMUL 3 CL 2(CL 1-) FORMUL 5 PO4 2(O4 P 3-) FORMUL 7 HOH *88(H2 O) HELIX 1 1 ASN A -5 GLY A 2 1 8 HELIX 2 2 ASP A 19 LYS A 38 1 20 HELIX 3 3 GLU A 43 LYS A 58 1 16 HELIX 4 4 CYS A 67 GLY A 85 1 19 HELIX 5 5 ASN A 89 HIS A 107 1 19 HELIX 6 6 ALA A 111 VAL A 125 1 15 HELIX 7 7 ASP A 134 CYS A 145 1 12 HELIX 8 8 CYS A 147 PHE A 151 5 5 HELIX 9 9 GLY A 158 GLN A 160 5 3 HELIX 10 10 ALA A 166 GLY A 178 1 13 HELIX 11 11 GLN A 180 GLY A 182 5 3 HELIX 12 12 THR A 193 GLY A 202 1 10 HELIX 13 13 SER A 229 LEU A 231 5 3 HELIX 14 14 GLU A 232 ASP A 241 1 10 SHEET 1 AA 6 ALA A 153 VAL A 156 0 SHEET 2 AA 6 ARG A 126 THR A 131 1 O LEU A 129 N VAL A 155 SHEET 3 AA 6 ALA A 8 PHE A 11 1 O VAL A 9 N LEU A 128 SHEET 4 AA 6 CYS A 184 GLY A 188 1 O VAL A 185 N PHE A 10 SHEET 5 AA 6 ALA A 205 ILE A 209 1 O ALA A 205 N MET A 186 SHEET 6 AA 6 TYR A 225 VAL A 227 1 O TYR A 225 N TRP A 208 LINK OD2 ASP A 12 NA NA A1245 1555 1555 2.48 LINK O ASP A 14 NA NA A1245 1555 1555 2.31 LINK OD1 ASP A 189 NA NA A1245 1555 1555 2.42 LINK NA NA A1245 O3 PO4 A1249 1555 1555 2.51 LINK NA NA A1245 O HOH A2075 1555 1555 2.34 CISPEP 1 LYS A 164 PRO A 165 0 8.95 SITE 1 AC1 6 ASP A 12 ASP A 14 ASP A 189 CL A1246 SITE 2 AC1 6 PO4 A1249 HOH A2075 SITE 1 AC2 4 ASN A 15 THR A 190 NA A1245 HOH A2088 SITE 1 AC3 2 LYS A 55 LYS A 58 SITE 1 AC4 5 ARG A 72 ARG A 104 LYS A 141 HOH A2085 SITE 2 AC4 5 HOH A2086 SITE 1 AC5 10 ASP A 12 LEU A 13 ASP A 14 THR A 131 SITE 2 AC5 10 ASN A 132 LYS A 164 NA A1245 HOH A2075 SITE 3 AC5 10 HOH A2087 HOH A2088 CRYST1 122.740 122.740 74.550 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008147 0.004704 0.000000 0.00000 SCALE2 0.000000 0.009408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013414 0.00000