HEADER OXIDOREDUCTASE 30-NOV-08 2W4Q TITLE CRYSTAL STRUCTURE OF HUMAN ZINC-BINDING ALCOHOL DEHYDROGENASE 1 TITLE 2 (ZADH1) IN TERNARY COMPLEX WITH NADP AND 18BETA-GLYCYRRHETINIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROSTAGLANDIN REDUCTASE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1-349; COMPND 5 SYNONYM: 15-OXOPROSTAGLANDIN 13-REDUCTASE, ZINC-BINDING ALCOHOL COMPND 6 DEHYDROGENASE DOMAIN-CONTAINING PROTEIN 1, PRG-2, ZINC-BINDING COMPND 7 ALCOHOL DEHYDROGENASE 1; COMPND 8 EC: 1.3.1.48; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-BASED VECTOR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-CTHF KEYWDS 15-OXOPROSTALGLANDIN, MEDIUM-CHAIN DEHYDROGENASE/REDUCTASE, NADP, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.SHAFQAT,W.W.YUE,E.UGOCHUKWU,S.PICAUD,F.NIESEN,C.ARROWSMITH, AUTHOR 2 J.WEIGELT,A.EDWARDS,C.BOUNTRA,U.OPPERMANN REVDAT 5 13-DEC-23 2W4Q 1 REMARK REVDAT 4 04-DEC-13 2W4Q 1 SOURCE REMARK HETSYN REVDAT 3 13-JUL-11 2W4Q 1 VERSN REVDAT 2 17-FEB-09 2W4Q 1 REMARK REVDAT 1 20-JAN-09 2W4Q 0 JRNL AUTH N.SHAFQAT,W.W.YUE,F.NIESEN,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF HUMAN ZINC-BINDING ALCOHOL JRNL TITL 2 DEHYDROGENASE 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0055 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 25301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1341 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1817 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 136 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.072 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2873 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1883 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3941 ; 1.413 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4538 ; 0.835 ; 3.005 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 5.767 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;41.285 ;25.259 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 469 ;12.145 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;12.684 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3114 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 515 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1734 ; 1.878 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2801 ; 2.913 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1139 ; 5.118 ; 7.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1136 ; 6.737 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 8.6520 -22.7420 30.4660 REMARK 3 T TENSOR REMARK 3 T11: 0.1537 T22: 0.1725 REMARK 3 T33: 0.0318 T12: 0.0641 REMARK 3 T13: 0.0539 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 0.8216 L22: 1.9164 REMARK 3 L33: 1.1745 L12: 0.1077 REMARK 3 L13: -0.5752 L23: -0.4516 REMARK 3 S TENSOR REMARK 3 S11: -0.1602 S12: -0.2089 S13: -0.1071 REMARK 3 S21: 0.0438 S22: 0.0948 S23: -0.0701 REMARK 3 S31: 0.1824 S32: 0.0777 S33: 0.0654 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9590 -13.6210 38.9870 REMARK 3 T TENSOR REMARK 3 T11: 0.2169 T22: 0.3446 REMARK 3 T33: 0.0394 T12: 0.0869 REMARK 3 T13: 0.0531 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 2.3416 L22: 4.5807 REMARK 3 L33: 1.3116 L12: -1.1984 REMARK 3 L13: -0.5926 L23: 0.0324 REMARK 3 S TENSOR REMARK 3 S11: -0.1919 S12: -0.6860 S13: 0.1126 REMARK 3 S21: 0.5780 S22: 0.2467 S23: -0.0530 REMARK 3 S31: 0.0530 S32: 0.2272 S33: -0.0549 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4390 0.9440 14.4930 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: 0.1045 REMARK 3 T33: 0.0713 T12: 0.0367 REMARK 3 T13: 0.0481 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 1.3514 L22: 0.9777 REMARK 3 L33: 1.3922 L12: -0.1280 REMARK 3 L13: -0.6142 L23: 0.0893 REMARK 3 S TENSOR REMARK 3 S11: 0.0788 S12: -0.0014 S13: 0.2506 REMARK 3 S21: -0.0838 S22: 0.0135 S23: 0.0328 REMARK 3 S31: -0.0776 S32: -0.0862 S33: -0.0922 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 209 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 22.1830 -3.9090 10.0780 REMARK 3 T TENSOR REMARK 3 T11: 0.1217 T22: 0.1506 REMARK 3 T33: 0.1081 T12: 0.0337 REMARK 3 T13: 0.0946 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 2.1371 L22: 1.4432 REMARK 3 L33: 1.6567 L12: -0.2399 REMARK 3 L13: -0.9075 L23: -0.2770 REMARK 3 S TENSOR REMARK 3 S11: 0.0095 S12: 0.0142 S13: 0.1992 REMARK 3 S21: -0.1797 S22: 0.0206 S23: -0.2919 REMARK 3 S31: 0.0958 S32: 0.2945 S33: -0.0301 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 346 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1300 -7.7110 20.9820 REMARK 3 T TENSOR REMARK 3 T11: 0.0868 T22: 0.1502 REMARK 3 T33: 0.0497 T12: 0.0170 REMARK 3 T13: 0.0359 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.0437 L22: 1.7784 REMARK 3 L33: 1.0806 L12: 0.2804 REMARK 3 L13: -0.1740 L23: -0.5064 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: -0.0685 S13: 0.0738 REMARK 3 S21: -0.0353 S22: 0.0593 S23: 0.2141 REMARK 3 S31: 0.0939 S32: -0.1495 S33: -0.0393 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2W4Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-08. REMARK 100 THE DEPOSITION ID IS D_1290038232. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25301 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 68.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VNA REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5; 2M (NH4)2SO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.68700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.05500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.68700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.05500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 349 REMARK 465 ALA A 350 REMARK 465 GLU A 351 REMARK 465 ASN A 352 REMARK 465 LEU A 353 REMARK 465 TYR A 354 REMARK 465 PHE A 355 REMARK 465 GLN A 356 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 SD CE REMARK 470 ASN A 33 CG OD1 ND2 REMARK 470 GLN A 72 CG CD OE1 NE2 REMARK 470 LYS A 116 CD CE NZ REMARK 470 GLN A 120 OE1 NE2 REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 ASN A 235 CG OD1 ND2 REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 LYS A 261 CE NZ REMARK 470 LYS A 278 CE NZ REMARK 470 LYS A 293 CE NZ REMARK 470 GLU A 348 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 100 O HOH A 2060 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 133 45.21 -106.43 REMARK 500 ASN A 260 7.52 56.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 1349 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CBW A 1350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CBW A 1351 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1352 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1355 DBREF 2W4Q A 0 0 PDB 2W4Q 2W4Q 0 0 DBREF 2W4Q A 1 349 UNP Q8N8N7 PTGR2_HUMAN 1 349 DBREF 2W4Q A 350 356 PDB 2W4Q 2W4Q 350 356 SEQRES 1 A 357 MET MET ILE VAL GLN ARG VAL VAL LEU ASN SER ARG PRO SEQRES 2 A 357 GLY LYS ASN GLY ASN PRO VAL ALA GLU ASN PHE ARG MET SEQRES 3 A 357 GLU GLU VAL TYR LEU PRO ASP ASN ILE ASN GLU GLY GLN SEQRES 4 A 357 VAL GLN VAL ARG THR LEU TYR LEU SER VAL ASP PRO TYR SEQRES 5 A 357 MET ARG CYS ARG MET ASN GLU ASP THR GLY THR ASP TYR SEQRES 6 A 357 ILE THR PRO TRP GLN LEU SER GLN VAL VAL ASP GLY GLY SEQRES 7 A 357 GLY ILE GLY ILE ILE GLU GLU SER LYS HIS THR ASN LEU SEQRES 8 A 357 THR LYS GLY ASP PHE VAL THR SER PHE TYR TRP PRO TRP SEQRES 9 A 357 GLN THR LYS VAL ILE LEU ASP GLY ASN SER LEU GLU LYS SEQRES 10 A 357 VAL ASP PRO GLN LEU VAL ASP GLY HIS LEU SER TYR PHE SEQRES 11 A 357 LEU GLY ALA ILE GLY MET PRO GLY LEU THR SER LEU ILE SEQRES 12 A 357 GLY ILE GLN GLU LYS GLY HIS ILE THR ALA GLY SER ASN SEQRES 13 A 357 LYS THR MET VAL VAL SER GLY ALA ALA GLY ALA CYS GLY SEQRES 14 A 357 SER VAL ALA GLY GLN ILE GLY HIS PHE LEU GLY CYS SER SEQRES 15 A 357 ARG VAL VAL GLY ILE CYS GLY THR HIS GLU LYS CYS ILE SEQRES 16 A 357 LEU LEU THR SER GLU LEU GLY PHE ASP ALA ALA ILE ASN SEQRES 17 A 357 TYR LYS LYS ASP ASN VAL ALA GLU GLN LEU ARG GLU SER SEQRES 18 A 357 CYS PRO ALA GLY VAL ASP VAL TYR PHE ASP ASN VAL GLY SEQRES 19 A 357 GLY ASN ILE SER ASP THR VAL ILE SER GLN MET ASN GLU SEQRES 20 A 357 ASN SER HIS ILE ILE LEU CYS GLY GLN ILE SER GLN TYR SEQRES 21 A 357 ASN LYS ASP VAL PRO TYR PRO PRO PRO LEU SER PRO ALA SEQRES 22 A 357 ILE GLU ALA ILE GLN LYS GLU ARG ASN ILE THR ARG GLU SEQRES 23 A 357 ARG PHE LEU VAL LEU ASN TYR LYS ASP LYS PHE GLU PRO SEQRES 24 A 357 GLY ILE LEU GLN LEU SER GLN TRP PHE LYS GLU GLY LYS SEQRES 25 A 357 LEU LYS ILE LYS GLU THR VAL ILE ASN GLY LEU GLU ASN SEQRES 26 A 357 MET GLY ALA ALA PHE GLN SER MET MET THR GLY GLY ASN SEQRES 27 A 357 ILE GLY LYS GLN ILE VAL CYS ILE SER GLU GLU ILE ALA SEQRES 28 A 357 GLU ASN LEU TYR PHE GLN HET NAP A1349 48 HET CBW A1350 34 HET CBW A1351 34 HET SO4 A1352 5 HET SO4 A1353 5 HET SO4 A1354 5 HET SO4 A1355 5 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM CBW (3BETA,5BETA,14BETA)-3-HYDROXY-11-OXOOLEAN-12-EN-29-OIC HETNAM 2 CBW ACID HETNAM SO4 SULFATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 CBW 2(C30 H46 O4) FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *187(H2 O) HELIX 1 1 VAL A 19 GLU A 21 5 3 HELIX 2 2 TYR A 51 MET A 56 1 6 HELIX 3 3 ASN A 112 LEU A 114 5 3 HELIX 4 4 ASP A 118 ASP A 123 5 6 HELIX 5 5 HIS A 125 GLY A 131 5 7 HELIX 6 6 GLY A 134 GLY A 148 1 15 HELIX 7 7 GLY A 165 LEU A 178 1 14 HELIX 8 8 THR A 189 GLU A 199 1 11 HELIX 9 9 ASN A 212 CYS A 221 1 10 HELIX 10 10 GLY A 233 SER A 242 1 10 HELIX 11 11 GLN A 255 TYR A 259 5 5 HELIX 12 12 SER A 270 ARG A 280 1 11 HELIX 13 13 LEU A 288 ASP A 294 5 7 HELIX 14 14 LYS A 295 GLU A 309 1 15 HELIX 15 15 ASN A 324 THR A 334 1 11 SHEET 1 AA 2 MET A 1 LEU A 8 0 SHEET 2 AA 2 PHE A 23 LEU A 30 -1 O ARG A 24 N VAL A 7 SHEET 1 AB 5 LYS A 106 ASP A 110 0 SHEET 2 AB 5 GLN A 38 SER A 47 -1 O VAL A 39 N LEU A 109 SHEET 3 AB 5 ASP A 75 SER A 85 -1 O GLY A 77 N SER A 47 SHEET 4 AB 5 PHE A 95 PRO A 102 -1 O VAL A 96 N GLY A 80 SHEET 5 AB 5 GLU A 115 LYS A 116 -1 O GLU A 115 N THR A 97 SHEET 1 AC 4 LYS A 106 ASP A 110 0 SHEET 2 AC 4 GLN A 38 SER A 47 -1 O VAL A 39 N LEU A 109 SHEET 3 AC 4 LYS A 340 CYS A 344 -1 O VAL A 343 N LEU A 46 SHEET 4 AC 4 GLU A 316 ASN A 320 1 O THR A 317 N ILE A 342 SHEET 1 AD 6 ALA A 204 ASN A 207 0 SHEET 2 AD 6 ARG A 182 CYS A 187 1 O GLY A 185 N ILE A 206 SHEET 3 AD 6 THR A 157 VAL A 160 1 O MET A 158 N VAL A 184 SHEET 4 AD 6 VAL A 225 ASP A 230 1 N ASP A 226 O THR A 157 SHEET 5 AD 6 MET A 244 LEU A 252 1 N ASN A 245 O VAL A 225 SHEET 6 AD 6 THR A 283 ARG A 286 1 O THR A 283 N ILE A 250 CISPEP 1 TYR A 265 PRO A 266 0 -2.61 SITE 1 AC1 35 PRO A 50 THR A 139 GLY A 165 ALA A 166 SITE 2 AC1 35 CYS A 167 CYS A 187 GLY A 188 LYS A 192 SITE 3 AC1 35 TYR A 208 ASN A 231 CYS A 253 GLY A 254 SITE 4 AC1 35 ILE A 256 SER A 257 TYR A 259 PHE A 287 SITE 5 AC1 35 VAL A 289 MET A 332 MET A 333 GLY A 335 SITE 6 AC1 35 ASN A 337 GLY A 339 CBW A1350 HOH A2085 SITE 7 AC1 35 HOH A2171 HOH A2172 HOH A2173 HOH A2174 SITE 8 AC1 35 HOH A2175 HOH A2176 HOH A2177 HOH A2178 SITE 9 AC1 35 HOH A2179 HOH A2181 HOH A2182 SITE 1 AC2 12 TYR A 51 TYR A 64 PHE A 99 TYR A 100 SITE 2 AC2 12 CYS A 253 GLY A 254 GLN A 255 TYR A 259 SITE 3 AC2 12 TYR A 265 NAP A1349 HOH A2058 HOH A2183 SITE 1 AC3 8 ARG A 24 GLU A 26 LYS A 116 VAL A 117 SITE 2 AC3 8 PHE A 129 GLU A 297 HOH A2073 HOH A2184 SITE 1 AC4 7 ASP A 211 ASN A 212 VAL A 213 ALA A 214 SITE 2 AC4 7 HOH A2116 HOH A2185 HOH A2186 SITE 1 AC5 4 THR A 189 HIS A 190 GLU A 191 HOH A2187 SITE 1 AC6 2 GLU A 285 ARG A 286 SITE 1 AC7 2 ALA A 214 ARG A 218 CRYST1 69.374 84.110 72.888 90.00 109.05 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014415 0.000000 0.004977 0.00000 SCALE2 0.000000 0.011889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014515 0.00000