data_2W6K # _entry.id 2W6K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2W6K PDBE EBI-38385 WWPDB D_1290038385 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2008-12-30 _pdbx_database_PDB_obs_spr.pdb_id 2W6K _pdbx_database_PDB_obs_spr.replace_pdb_id 2BSN _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2W6L _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'THE CRYSTAL STRUCTURE AT 1.7 A RESOLUTION OF COBE, A PROTEIN FROM THE COBALAMIN ( VITAMIN B12) BIOSYNTHETIC PATHWAY' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2W6K _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2008-12-18 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vevodova, J.' 1 'Smith, D.' 2 'McGoldrick, H.' 3 'Deery, E.' 4 'Murzin, A.G.' 5 'Warren, M.J.' 6 'Wilson, K.S.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The Crystal Structure at 1.7 A Resolution of Cobe, a Protein from the Cobalamin (Vitamin B12) Biosynthetic Pathway' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? 1 'Crystallization and Preliminary Structure Analysis of Cobe, an Essential Protein of Cobalamin (Vitamin B12) Biosynthesis.' 'Acta Crystallogr.,Sect.F' 61 442 ? 2005 ? DK 1744-3091 ? ? 16511064 10.1107/S1744309105006731 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Vevodova, J.' 1 primary 'Smith, D.' 2 primary 'Mcgoldrick, H.' 3 primary 'Deery, E.' 4 primary 'Murzin, A.G.' 5 primary 'Warren, M.J.' 6 primary 'Wilson, K.S.' 7 1 'Vevodova, J.' 8 1 'Graham, R.M.' 9 1 'Raux, E.' 10 1 'Warren, M.J.' 11 1 'Wilson, K.S.' 12 # _cell.entry_id 2W6K _cell.length_a 31.729 _cell.length_b 41.271 _cell.length_c 87.940 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W6K _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man COBE 15435.606 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 4 water nat water 18.015 97 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSH(MSE)PLPIPSLLIAGIGCRRGCSAEHLRALLERTLGEHGRSLAELDALASIDGKRDEPGLRQLATLLERPVHFLAP AVLHDYEPRLLSPSAVALRETGCSSVAEAAALALAERLGGGRADLLGAKRSDDRASIALARLLTERELP ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMPLPIPSLLIAGIGCRRGCSAEHLRALLERTLGEHGRSLAELDALASIDGKRDEPGLRQLATLLERPVHFLAPAVLH DYEPRLLSPSAVALRETGCSSVAEAAALALAERLGGGRADLLGAKRSDDRASIALARLLTERELP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MSE n 1 5 PRO n 1 6 LEU n 1 7 PRO n 1 8 ILE n 1 9 PRO n 1 10 SER n 1 11 LEU n 1 12 LEU n 1 13 ILE n 1 14 ALA n 1 15 GLY n 1 16 ILE n 1 17 GLY n 1 18 CYS n 1 19 ARG n 1 20 ARG n 1 21 GLY n 1 22 CYS n 1 23 SER n 1 24 ALA n 1 25 GLU n 1 26 HIS n 1 27 LEU n 1 28 ARG n 1 29 ALA n 1 30 LEU n 1 31 LEU n 1 32 GLU n 1 33 ARG n 1 34 THR n 1 35 LEU n 1 36 GLY n 1 37 GLU n 1 38 HIS n 1 39 GLY n 1 40 ARG n 1 41 SER n 1 42 LEU n 1 43 ALA n 1 44 GLU n 1 45 LEU n 1 46 ASP n 1 47 ALA n 1 48 LEU n 1 49 ALA n 1 50 SER n 1 51 ILE n 1 52 ASP n 1 53 GLY n 1 54 LYS n 1 55 ARG n 1 56 ASP n 1 57 GLU n 1 58 PRO n 1 59 GLY n 1 60 LEU n 1 61 ARG n 1 62 GLN n 1 63 LEU n 1 64 ALA n 1 65 THR n 1 66 LEU n 1 67 LEU n 1 68 GLU n 1 69 ARG n 1 70 PRO n 1 71 VAL n 1 72 HIS n 1 73 PHE n 1 74 LEU n 1 75 ALA n 1 76 PRO n 1 77 ALA n 1 78 VAL n 1 79 LEU n 1 80 HIS n 1 81 ASP n 1 82 TYR n 1 83 GLU n 1 84 PRO n 1 85 ARG n 1 86 LEU n 1 87 LEU n 1 88 SER n 1 89 PRO n 1 90 SER n 1 91 ALA n 1 92 VAL n 1 93 ALA n 1 94 LEU n 1 95 ARG n 1 96 GLU n 1 97 THR n 1 98 GLY n 1 99 CYS n 1 100 SER n 1 101 SER n 1 102 VAL n 1 103 ALA n 1 104 GLU n 1 105 ALA n 1 106 ALA n 1 107 ALA n 1 108 LEU n 1 109 ALA n 1 110 LEU n 1 111 ALA n 1 112 GLU n 1 113 ARG n 1 114 LEU n 1 115 GLY n 1 116 GLY n 1 117 GLY n 1 118 ARG n 1 119 ALA n 1 120 ASP n 1 121 LEU n 1 122 LEU n 1 123 GLY n 1 124 ALA n 1 125 LYS n 1 126 ARG n 1 127 SER n 1 128 ASP n 1 129 ASP n 1 130 ARG n 1 131 ALA n 1 132 SER n 1 133 ILE n 1 134 ALA n 1 135 LEU n 1 136 ALA n 1 137 ARG n 1 138 LEU n 1 139 LEU n 1 140 THR n 1 141 GLU n 1 142 ARG n 1 143 GLU n 1 144 LEU n 1 145 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'PSEUDOMONAS AERUGINOSA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 287 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector PET14B _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2W6K 1 ? ? 2W6K ? 2 UNP Q9HZQ0_PSEAE 1 ? ? Q9HZQ0 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2W6K A 1 ? 3 ? 2W6K -2 ? 0 ? -2 0 2 2 2W6K A 4 ? 145 ? Q9HZQ0 1 ? 142 ? 1 142 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2W6K _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.9 _exptl_crystal.density_percent_sol 35 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M MES PH6.9, 2M AMMONIUM SULPHATE, 5% DIOXANE' # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 'IMAGE PLATE' MARRESEARCH ? ? 2 CCD 'ADSC CCD' ? ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M ? 'SINGLE WAVELENGTH' x-ray 2 1 M ? ? x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9340 1.0 2 0.95372 1.0 3 0.97925 1.0 4 0.97944 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'ESRF BEAMLINE ID14-1' ESRF ID14-1 0.9340 ? 2 SYNCHROTRON 'ESRF BEAMLINE BM14' ESRF BM14 ? '0.95372, 0.97925, 0.97944' # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2W6K _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 45.00 _reflns.d_resolution_high 1.70 _reflns.number_obs 13347 _reflns.number_all ? _reflns.percent_possible_obs 97.3 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 30.40 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 12.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_all 96.0 _reflns_shell.Rmerge_I_obs 0.49 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.10 _reflns_shell.pdbx_redundancy 11.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2W6K _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 12361 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30.10 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 97.1 _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.199 _refine.ls_R_factor_R_free 0.250 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.800 _refine.ls_number_reflns_R_free 619 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.B_iso_mean 20.44 _refine.aniso_B[1][1] -0.86000 _refine.aniso_B[2][2] 0.69000 _refine.aniso_B[3][3] 0.17000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. MAD DATASETS TO 2.5A RESOLUTION WERE USED TO OBTAIN THE INITIAL MODEL. SAD DATA TO 1.7A RESOLUTION WERE USED TO EXTEND THE RESOLUTION PRIOR THE REFINEMENT. ; _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.138 _refine.pdbx_overall_ESU_R_Free 0.135 _refine.overall_SU_ML 0.081 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 2.349 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1053 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 97 _refine_hist.number_atoms_total 1178 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 30.10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.021 ? 1106 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.690 2.031 ? 1490 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.099 5.000 ? 145 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.253 20.465 ? 43 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 18.159 15.000 ? 188 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.899 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.116 0.200 ? 171 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 810 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.221 0.200 ? 538 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.302 0.200 ? 734 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.155 0.200 ? 80 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.251 0.200 ? 60 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.162 0.200 ? 22 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.056 1.500 ? 723 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.814 2.000 ? 1120 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.393 3.000 ? 401 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.797 4.500 ? 368 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.74 _refine_ls_shell.number_reflns_R_work 852 _refine_ls_shell.R_factor_R_work 0.2440 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2460 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 37 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2W6K _struct.title 'The crystal structure at 1.7 A resolution of CobE, a protein from the cobalamin (vitamin B12) biosynthetic pathway' _struct.pdbx_descriptor COBE _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2W6K _struct_keywords.pdbx_keywords 'BIOSYNTHETIC PROTEIN' _struct_keywords.text 'BIOSYNTHETIC PROTEIN, COBALAMIN, COBE, PSEUDOMONAS AERUGINOSA, VITAMIN B12' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 23 ? HIS A 38 ? SER A 20 HIS A 35 1 ? 16 HELX_P HELX_P2 2 SER A 41 ? LEU A 45 ? SER A 38 LEU A 42 5 ? 5 HELX_P HELX_P3 3 GLU A 57 ? GLU A 68 ? GLU A 54 GLU A 65 1 ? 12 HELX_P HELX_P4 4 ALA A 75 ? ASP A 81 ? ALA A 72 ASP A 78 1 ? 7 HELX_P HELX_P5 5 TYR A 82 ? LEU A 86 ? TYR A 79 LEU A 83 5 ? 5 HELX_P HELX_P6 6 SER A 90 ? GLY A 98 ? SER A 87 GLY A 95 1 ? 9 HELX_P HELX_P7 7 SER A 101 ? GLY A 116 ? SER A 98 GLY A 113 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A HIS 3 C ? ? ? 1_555 A MSE 4 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.333 ? covale2 covale ? ? A MSE 4 C ? ? ? 1_555 A PRO 5 N ? ? A MSE 1 A PRO 2 1_555 ? ? ? ? ? ? ? 1.334 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? parallel AB 2 3 ? parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 71 ? LEU A 74 ? VAL A 68 LEU A 71 AA 2 ALA A 47 ? ILE A 51 ? ALA A 44 ILE A 48 AA 3 LEU A 12 ? CYS A 18 ? LEU A 9 CYS A 15 AA 4 ALA A 131 ? LEU A 138 ? ALA A 128 LEU A 135 AA 5 ALA A 119 ? LEU A 121 ? ALA A 116 LEU A 118 AB 1 VAL A 71 ? LEU A 74 ? VAL A 68 LEU A 71 AB 2 ALA A 47 ? ILE A 51 ? ALA A 44 ILE A 48 AB 3 LEU A 12 ? CYS A 18 ? LEU A 9 CYS A 15 AB 4 ALA A 131 ? LEU A 138 ? ALA A 128 LEU A 135 AB 5 ARG A 126 ? SER A 127 ? ARG A 123 SER A 124 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N HIS A 72 ? N HIS A 69 O LEU A 48 ? O LEU A 45 AA 2 3 N ALA A 49 ? N ALA A 46 O ALA A 14 ? O ALA A 11 AA 3 4 N GLY A 17 ? N GLY A 14 O SER A 132 ? O SER A 129 AA 4 5 N ARG A 137 ? N ARG A 134 O ASP A 120 ? O ASP A 117 AB 1 2 N HIS A 72 ? N HIS A 69 O LEU A 48 ? O LEU A 45 AB 2 3 N ALA A 49 ? N ALA A 46 O ALA A 14 ? O ALA A 11 AB 3 4 N GLY A 17 ? N GLY A 14 O SER A 132 ? O SER A 129 AB 4 5 N ILE A 133 ? N ILE A 130 O ARG A 126 ? O ARG A 123 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A1140' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A1141' AC3 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE GOL A1142' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A1143' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A1144' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 GLY A 17 ? GLY A 14 . ? 1_555 ? 2 AC1 8 ALA A 93 ? ALA A 90 . ? 1_555 ? 3 AC1 8 SER A 101 ? SER A 98 . ? 1_555 ? 4 AC1 8 VAL A 102 ? VAL A 99 . ? 1_555 ? 5 AC1 8 ALA A 103 ? ALA A 100 . ? 1_555 ? 6 AC1 8 LYS A 125 ? LYS A 122 . ? 1_555 ? 7 AC1 8 SER A 132 ? SER A 129 . ? 1_555 ? 8 AC1 8 HOH G . ? HOH A 2095 . ? 1_555 ? 9 AC2 7 CYS A 22 ? CYS A 19 . ? 1_555 ? 10 AC2 7 SER A 23 ? SER A 20 . ? 1_555 ? 11 AC2 7 HIS A 26 ? HIS A 23 . ? 1_555 ? 12 AC2 7 SER A 90 ? SER A 87 . ? 1_555 ? 13 AC2 7 ALA A 91 ? ALA A 88 . ? 1_555 ? 14 AC2 7 VAL A 92 ? VAL A 89 . ? 1_555 ? 15 AC2 7 HOH G . ? HOH A 2078 . ? 1_555 ? 16 AC3 12 CYS A 18 ? CYS A 15 . ? 1_555 ? 17 AC3 12 ARG A 20 ? ARG A 17 . ? 1_555 ? 18 AC3 12 GLY A 21 ? GLY A 18 . ? 1_555 ? 19 AC3 12 CYS A 22 ? CYS A 19 . ? 1_555 ? 20 AC3 12 ARG A 55 ? ARG A 52 . ? 1_555 ? 21 AC3 12 ASP A 56 ? ASP A 53 . ? 1_555 ? 22 AC3 12 GLU A 57 ? GLU A 54 . ? 1_555 ? 23 AC3 12 PRO A 58 ? PRO A 55 . ? 1_555 ? 24 AC3 12 GLY A 59 ? GLY A 56 . ? 1_555 ? 25 AC3 12 LEU A 60 ? LEU A 57 . ? 1_555 ? 26 AC3 12 ASP A 129 ? ASP A 126 . ? 1_555 ? 27 AC3 12 HOH G . ? HOH A 2096 . ? 1_555 ? 28 AC4 5 ASP A 52 ? ASP A 49 . ? 1_555 ? 29 AC4 5 GLU A 57 ? GLU A 54 . ? 1_555 ? 30 AC4 5 ARG A 61 ? ARG A 58 . ? 1_555 ? 31 AC4 5 PHE A 73 ? PHE A 70 . ? 1_555 ? 32 AC4 5 PRO A 84 ? PRO A 81 . ? 1_555 ? 33 AC5 5 ARG A 19 ? ARG A 16 . ? 1_555 ? 34 AC5 5 ARG A 20 ? ARG A 17 . ? 1_555 ? 35 AC5 5 ARG A 130 ? ARG A 127 . ? 1_555 ? 36 AC5 5 HOH G . ? HOH A 2084 . ? 1_555 ? 37 AC5 5 HOH G . ? HOH A 2097 . ? 1_555 ? # _database_PDB_matrix.entry_id 2W6K _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2W6K _atom_sites.fract_transf_matrix[1][1] 0.031517 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024230 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011371 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 -2 GLY GLY A . n A 1 2 SER 2 -1 -1 SER SER A . n A 1 3 HIS 3 0 0 HIS HIS A . n A 1 4 MSE 4 1 1 MSE MSE A . n A 1 5 PRO 5 2 2 PRO PRO A . n A 1 6 LEU 6 3 3 LEU LEU A . n A 1 7 PRO 7 4 4 PRO PRO A . n A 1 8 ILE 8 5 5 ILE ILE A . n A 1 9 PRO 9 6 6 PRO PRO A . n A 1 10 SER 10 7 7 SER SER A . n A 1 11 LEU 11 8 8 LEU LEU A . n A 1 12 LEU 12 9 9 LEU LEU A . n A 1 13 ILE 13 10 10 ILE ILE A . n A 1 14 ALA 14 11 11 ALA ALA A . n A 1 15 GLY 15 12 12 GLY GLY A . n A 1 16 ILE 16 13 13 ILE ILE A . n A 1 17 GLY 17 14 14 GLY GLY A . n A 1 18 CYS 18 15 15 CYS CYS A . n A 1 19 ARG 19 16 16 ARG ARG A . n A 1 20 ARG 20 17 17 ARG ARG A . n A 1 21 GLY 21 18 18 GLY GLY A . n A 1 22 CYS 22 19 19 CYS CYS A . n A 1 23 SER 23 20 20 SER SER A . n A 1 24 ALA 24 21 21 ALA ALA A . n A 1 25 GLU 25 22 22 GLU GLU A . n A 1 26 HIS 26 23 23 HIS HIS A . n A 1 27 LEU 27 24 24 LEU LEU A . n A 1 28 ARG 28 25 25 ARG ARG A . n A 1 29 ALA 29 26 26 ALA ALA A . n A 1 30 LEU 30 27 27 LEU LEU A . n A 1 31 LEU 31 28 28 LEU LEU A . n A 1 32 GLU 32 29 29 GLU GLU A . n A 1 33 ARG 33 30 30 ARG ARG A . n A 1 34 THR 34 31 31 THR THR A . n A 1 35 LEU 35 32 32 LEU LEU A . n A 1 36 GLY 36 33 33 GLY GLY A . n A 1 37 GLU 37 34 34 GLU GLU A . n A 1 38 HIS 38 35 35 HIS HIS A . n A 1 39 GLY 39 36 36 GLY GLY A . n A 1 40 ARG 40 37 37 ARG ARG A . n A 1 41 SER 41 38 38 SER SER A . n A 1 42 LEU 42 39 39 LEU LEU A . n A 1 43 ALA 43 40 40 ALA ALA A . n A 1 44 GLU 44 41 41 GLU GLU A . n A 1 45 LEU 45 42 42 LEU LEU A . n A 1 46 ASP 46 43 43 ASP ASP A . n A 1 47 ALA 47 44 44 ALA ALA A . n A 1 48 LEU 48 45 45 LEU LEU A . n A 1 49 ALA 49 46 46 ALA ALA A . n A 1 50 SER 50 47 47 SER SER A . n A 1 51 ILE 51 48 48 ILE ILE A . n A 1 52 ASP 52 49 49 ASP ASP A . n A 1 53 GLY 53 50 50 GLY GLY A . n A 1 54 LYS 54 51 51 LYS LYS A . n A 1 55 ARG 55 52 52 ARG ARG A . n A 1 56 ASP 56 53 53 ASP ASP A . n A 1 57 GLU 57 54 54 GLU GLU A . n A 1 58 PRO 58 55 55 PRO PRO A . n A 1 59 GLY 59 56 56 GLY GLY A . n A 1 60 LEU 60 57 57 LEU LEU A . n A 1 61 ARG 61 58 58 ARG ARG A . n A 1 62 GLN 62 59 59 GLN GLN A . n A 1 63 LEU 63 60 60 LEU LEU A . n A 1 64 ALA 64 61 61 ALA ALA A . n A 1 65 THR 65 62 62 THR THR A . n A 1 66 LEU 66 63 63 LEU LEU A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 GLU 68 65 65 GLU GLU A . n A 1 69 ARG 69 66 66 ARG ARG A . n A 1 70 PRO 70 67 67 PRO PRO A . n A 1 71 VAL 71 68 68 VAL VAL A . n A 1 72 HIS 72 69 69 HIS HIS A . n A 1 73 PHE 73 70 70 PHE PHE A . n A 1 74 LEU 74 71 71 LEU LEU A . n A 1 75 ALA 75 72 72 ALA ALA A . n A 1 76 PRO 76 73 73 PRO PRO A . n A 1 77 ALA 77 74 74 ALA ALA A . n A 1 78 VAL 78 75 75 VAL VAL A . n A 1 79 LEU 79 76 76 LEU LEU A . n A 1 80 HIS 80 77 77 HIS HIS A . n A 1 81 ASP 81 78 78 ASP ASP A . n A 1 82 TYR 82 79 79 TYR TYR A . n A 1 83 GLU 83 80 80 GLU GLU A . n A 1 84 PRO 84 81 81 PRO PRO A . n A 1 85 ARG 85 82 82 ARG ARG A . n A 1 86 LEU 86 83 83 LEU LEU A . n A 1 87 LEU 87 84 84 LEU LEU A . n A 1 88 SER 88 85 85 SER SER A . n A 1 89 PRO 89 86 86 PRO PRO A . n A 1 90 SER 90 87 87 SER SER A . n A 1 91 ALA 91 88 88 ALA ALA A . n A 1 92 VAL 92 89 89 VAL VAL A . n A 1 93 ALA 93 90 90 ALA ALA A . n A 1 94 LEU 94 91 91 LEU LEU A . n A 1 95 ARG 95 92 92 ARG ARG A . n A 1 96 GLU 96 93 93 GLU GLU A . n A 1 97 THR 97 94 94 THR THR A . n A 1 98 GLY 98 95 95 GLY GLY A . n A 1 99 CYS 99 96 96 CYS CYS A . n A 1 100 SER 100 97 97 SER SER A . n A 1 101 SER 101 98 98 SER SER A . n A 1 102 VAL 102 99 99 VAL VAL A . n A 1 103 ALA 103 100 100 ALA ALA A . n A 1 104 GLU 104 101 101 GLU GLU A . n A 1 105 ALA 105 102 102 ALA ALA A . n A 1 106 ALA 106 103 103 ALA ALA A . n A 1 107 ALA 107 104 104 ALA ALA A . n A 1 108 LEU 108 105 105 LEU LEU A . n A 1 109 ALA 109 106 106 ALA ALA A . n A 1 110 LEU 110 107 107 LEU LEU A . n A 1 111 ALA 111 108 108 ALA ALA A . n A 1 112 GLU 112 109 109 GLU GLU A . n A 1 113 ARG 113 110 110 ARG ARG A . n A 1 114 LEU 114 111 111 LEU LEU A . n A 1 115 GLY 115 112 112 GLY GLY A . n A 1 116 GLY 116 113 113 GLY GLY A . n A 1 117 GLY 117 114 114 GLY GLY A . n A 1 118 ARG 118 115 115 ARG ARG A . n A 1 119 ALA 119 116 116 ALA ALA A . n A 1 120 ASP 120 117 117 ASP ASP A . n A 1 121 LEU 121 118 118 LEU LEU A . n A 1 122 LEU 122 119 119 LEU LEU A . n A 1 123 GLY 123 120 120 GLY GLY A . n A 1 124 ALA 124 121 121 ALA ALA A . n A 1 125 LYS 125 122 122 LYS LYS A . n A 1 126 ARG 126 123 123 ARG ARG A . n A 1 127 SER 127 124 124 SER SER A . n A 1 128 ASP 128 125 125 ASP ASP A . n A 1 129 ASP 129 126 126 ASP ASP A . n A 1 130 ARG 130 127 127 ARG ARG A . n A 1 131 ALA 131 128 128 ALA ALA A . n A 1 132 SER 132 129 129 SER SER A . n A 1 133 ILE 133 130 130 ILE ILE A . n A 1 134 ALA 134 131 131 ALA ALA A . n A 1 135 LEU 135 132 132 LEU LEU A . n A 1 136 ALA 136 133 133 ALA ALA A . n A 1 137 ARG 137 134 134 ARG ARG A . n A 1 138 LEU 138 135 135 LEU LEU A . n A 1 139 LEU 139 136 136 LEU LEU A . n A 1 140 THR 140 137 137 THR THR A . n A 1 141 GLU 141 138 138 GLU GLU A . n A 1 142 ARG 142 139 139 ARG ARG A . n A 1 143 GLU 143 140 ? ? ? A . n A 1 144 LEU 144 141 ? ? ? A . n A 1 145 PRO 145 142 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 1140 1140 SO4 SO4 A . C 2 SO4 1 1141 1141 SO4 SO4 A . D 3 GOL 1 1142 1142 GOL GOL A . E 3 GOL 1 1143 1143 GOL GOL A . F 3 GOL 1 1144 1144 GOL GOL A . G 4 HOH 1 2001 2001 HOH HOH A . G 4 HOH 2 2002 2002 HOH HOH A . G 4 HOH 3 2003 2003 HOH HOH A . G 4 HOH 4 2004 2004 HOH HOH A . G 4 HOH 5 2005 2005 HOH HOH A . G 4 HOH 6 2006 2006 HOH HOH A . G 4 HOH 7 2007 2007 HOH HOH A . G 4 HOH 8 2008 2008 HOH HOH A . G 4 HOH 9 2009 2009 HOH HOH A . G 4 HOH 10 2010 2010 HOH HOH A . G 4 HOH 11 2011 2011 HOH HOH A . G 4 HOH 12 2012 2012 HOH HOH A . G 4 HOH 13 2013 2013 HOH HOH A . G 4 HOH 14 2014 2014 HOH HOH A . G 4 HOH 15 2015 2015 HOH HOH A . G 4 HOH 16 2016 2016 HOH HOH A . G 4 HOH 17 2017 2017 HOH HOH A . G 4 HOH 18 2018 2018 HOH HOH A . G 4 HOH 19 2019 2019 HOH HOH A . G 4 HOH 20 2020 2020 HOH HOH A . G 4 HOH 21 2021 2021 HOH HOH A . G 4 HOH 22 2022 2022 HOH HOH A . G 4 HOH 23 2023 2023 HOH HOH A . G 4 HOH 24 2024 2024 HOH HOH A . G 4 HOH 25 2025 2025 HOH HOH A . G 4 HOH 26 2026 2026 HOH HOH A . G 4 HOH 27 2027 2027 HOH HOH A . G 4 HOH 28 2028 2028 HOH HOH A . G 4 HOH 29 2029 2029 HOH HOH A . G 4 HOH 30 2030 2030 HOH HOH A . G 4 HOH 31 2031 2031 HOH HOH A . G 4 HOH 32 2032 2032 HOH HOH A . G 4 HOH 33 2033 2033 HOH HOH A . G 4 HOH 34 2034 2034 HOH HOH A . G 4 HOH 35 2035 2035 HOH HOH A . G 4 HOH 36 2036 2036 HOH HOH A . G 4 HOH 37 2037 2037 HOH HOH A . G 4 HOH 38 2038 2038 HOH HOH A . G 4 HOH 39 2039 2039 HOH HOH A . G 4 HOH 40 2040 2040 HOH HOH A . G 4 HOH 41 2041 2041 HOH HOH A . G 4 HOH 42 2042 2042 HOH HOH A . G 4 HOH 43 2043 2043 HOH HOH A . G 4 HOH 44 2044 2044 HOH HOH A . G 4 HOH 45 2045 2045 HOH HOH A . G 4 HOH 46 2046 2046 HOH HOH A . G 4 HOH 47 2047 2047 HOH HOH A . G 4 HOH 48 2048 2048 HOH HOH A . G 4 HOH 49 2049 2049 HOH HOH A . G 4 HOH 50 2050 2050 HOH HOH A . G 4 HOH 51 2051 2051 HOH HOH A . G 4 HOH 52 2052 2052 HOH HOH A . G 4 HOH 53 2053 2053 HOH HOH A . G 4 HOH 54 2054 2054 HOH HOH A . G 4 HOH 55 2055 2055 HOH HOH A . G 4 HOH 56 2056 2056 HOH HOH A . G 4 HOH 57 2057 2057 HOH HOH A . G 4 HOH 58 2058 2058 HOH HOH A . G 4 HOH 59 2059 2059 HOH HOH A . G 4 HOH 60 2060 2060 HOH HOH A . G 4 HOH 61 2061 2061 HOH HOH A . G 4 HOH 62 2062 2062 HOH HOH A . G 4 HOH 63 2063 2063 HOH HOH A . G 4 HOH 64 2064 2064 HOH HOH A . G 4 HOH 65 2065 2065 HOH HOH A . G 4 HOH 66 2066 2066 HOH HOH A . G 4 HOH 67 2067 2067 HOH HOH A . G 4 HOH 68 2068 2068 HOH HOH A . G 4 HOH 69 2069 2069 HOH HOH A . G 4 HOH 70 2070 2070 HOH HOH A . G 4 HOH 71 2071 2071 HOH HOH A . G 4 HOH 72 2072 2072 HOH HOH A . G 4 HOH 73 2073 2073 HOH HOH A . G 4 HOH 74 2074 2074 HOH HOH A . G 4 HOH 75 2075 2075 HOH HOH A . G 4 HOH 76 2076 2076 HOH HOH A . G 4 HOH 77 2077 2077 HOH HOH A . G 4 HOH 78 2078 2078 HOH HOH A . G 4 HOH 79 2079 2079 HOH HOH A . G 4 HOH 80 2080 2080 HOH HOH A . G 4 HOH 81 2081 2081 HOH HOH A . G 4 HOH 82 2082 2082 HOH HOH A . G 4 HOH 83 2083 2083 HOH HOH A . G 4 HOH 84 2084 2084 HOH HOH A . G 4 HOH 85 2085 2085 HOH HOH A . G 4 HOH 86 2086 2086 HOH HOH A . G 4 HOH 87 2087 2087 HOH HOH A . G 4 HOH 88 2088 2088 HOH HOH A . G 4 HOH 89 2089 2089 HOH HOH A . G 4 HOH 90 2090 2090 HOH HOH A . G 4 HOH 91 2091 2091 HOH HOH A . G 4 HOH 92 2092 2092 HOH HOH A . G 4 HOH 93 2093 2093 HOH HOH A . G 4 HOH 94 2094 2094 HOH HOH A . G 4 HOH 95 2095 2095 HOH HOH A . G 4 HOH 96 2096 2096 HOH HOH A . G 4 HOH 97 2097 2097 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id MSE _pdbx_struct_mod_residue.label_seq_id 4 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id MSE _pdbx_struct_mod_residue.auth_seq_id 1 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id MET _pdbx_struct_mod_residue.details SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2008-12-30 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, TWO SHEETS ARE DEFINED. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH1 A ARG 30 ? ? O A HOH 2020 ? ? 0.28 2 1 CZ A ARG 30 ? ? O A HOH 2020 ? ? 1.29 3 1 OE2 A GLU 138 ? ? O A HOH 2093 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 4 ? ? -83.89 -96.76 2 1 ASP A 125 ? ? -120.64 -163.20 3 1 THR A 137 ? ? -54.98 -72.14 4 1 GLU A 138 ? ? -117.07 60.72 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ILE A 5 ? ? PRO A 6 ? ? 135.27 2 1 THR A 137 ? ? GLU A 138 ? ? -44.37 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 140 ? A GLU 143 2 1 Y 1 A LEU 141 ? A LEU 144 3 1 Y 1 A PRO 142 ? A PRO 145 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 GLYCEROL GOL 4 water HOH #