HEADER PROTEIN TRANSPORT 09-JAN-09 2W85 TITLE STRUCTURE OF PEX14 IN COMPLEX WITH PEX19 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL MEMBRANE ANCHOR PROTEIN PEX14; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN, RESIDUES 16-80; COMPND 5 SYNONYM: PEROXIN-14, PTS1 RECEPTOR-DOCKING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PEROXIN-19; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: F/YFXXXF MOTIF, RESIDUES 66-77; COMPND 11 SYNONYM: PEROXISOMAL FARNESYLATED PROTEIN, 33 KDA HOUSEKEEPING COMPND 12 PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM11_MOD; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS ZELLWEGER SYNDROME, ALTERNATIVE SPLICING, TRANSLOCATION, KEYWDS 2 PHOSPHOPROTEIN, PROTEIN COMPLEX, PEROXISOME BIOGENESIS DISORDER, KEYWDS 3 PEROXISOME TARGETING SIGNAL, PEROXISOME, PRENYLATION, LIPOPROTEIN, KEYWDS 4 POLYMORPHISM, PTS, MEMBRANE, PROTEIN TRANSPORT, PEROXISOME IMPORT, KEYWDS 5 PEROXISOME BIOGENESIS, RECEPTOR-CARGO COMPLEX EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.NEUFELD,F.V.FILIPP,B.SIMON,A.NEUHAUS,N.SCHUELLER,C.DAVID, AUTHOR 2 H.KOOSHAPUR,T.MADL,R.ERDMANN,W.SCHLIEBS,M.WILMANNS,M.SATTLER REVDAT 4 15-MAY-24 2W85 1 REMARK REVDAT 3 08-MAY-13 2W85 1 TITLE KEYWDS REMARK VERSN REVDAT 2 21-APR-09 2W85 1 JRNL REVDAT 1 17-FEB-09 2W85 0 JRNL AUTH C.NEUFELD,F.V.FILIPP,B.SIMON,A.NEUHAUS,N.SCHUELLER,C.DAVID, JRNL AUTH 2 H.KOOSHAPUR,T.MADL,R.ERDMANN,W.SCHLIEBS,M.WILMANNS,M.SATTLER JRNL TITL STRUCTURAL BASIS FOR COMPETITIVE INTERACTIONS OF PEX14 WITH JRNL TITL 2 THE IMPORT RECEPTORS PEX5 AND PEX19. JRNL REF EMBO J. V. 28 745 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19197237 JRNL DOI 10.1038/EMBOJ.2009.7 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2W85 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1290038515. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 10%WATER/90%D2O, 100%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HNCACB; 3D C(CO)NH; REMARK 210 3D CBCA(CO)NH; 3D 1H-15N NOESY; REMARK 210 3D H(CCO)NH; 3D 1H-13C NOESY; 3D REMARK 210 HCCH-TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0.4, TOPSPIN 1.3, REMARK 210 NMRPIPE, ARIA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCUTRE WAS DETERMINED USING EDITED-FILTERED REMARK 210 EXPERIMENTS ON 13C,15N LABELLED PEX14 - UNLABELLED PEX5 COMPLEXES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 MET A 14 REMARK 465 ALA A 15 REMARK 465 THR A 16 REMARK 465 PRO A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 PRO A 77 REMARK 465 SER A 78 REMARK 465 SER A 79 REMARK 465 LEU A 80 REMARK 465 TRP A 81 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 PHE A 52 HD13 LEU A 53 1.33 REMARK 500 HH12 ARG A 50 OD2 ASP A 75 1.57 REMARK 500 HZ3 LYS A 34 OXT SER B 112 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 9 PHE A 67 CE1 PHE A 67 CZ -0.127 REMARK 500 9 PHE A 67 CZ PHE A 67 CE2 0.146 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 21 -28.79 73.88 REMARK 500 1 PRO A 24 109.14 -58.05 REMARK 500 1 SER A 39 -69.32 -172.48 REMARK 500 1 ALA A 74 -86.57 -144.72 REMARK 500 1 GLN B 107 -61.44 -91.55 REMARK 500 2 LEU A 23 105.40 -56.20 REMARK 500 2 GLN A 37 34.50 -96.96 REMARK 500 2 SER A 39 -67.47 69.04 REMARK 500 2 ALA A 74 44.44 -93.63 REMARK 500 2 ASP A 75 -141.07 57.97 REMARK 500 3 GLN A 37 43.21 -92.58 REMARK 500 3 SER A 39 -64.75 173.16 REMARK 500 3 ASP A 75 133.16 71.72 REMARK 500 4 LEU A 23 108.80 -56.47 REMARK 500 4 PRO A 24 105.72 -50.49 REMARK 500 4 GLN A 37 32.64 -95.28 REMARK 500 4 SER A 39 -68.17 -167.57 REMARK 500 4 THR A 72 -73.04 -78.54 REMARK 500 4 GLN B 107 -62.73 -98.16 REMARK 500 5 VAL A 22 78.99 41.55 REMARK 500 5 PRO A 24 83.14 -61.79 REMARK 500 5 GLN A 37 34.54 -79.93 REMARK 500 5 SER A 39 -65.85 72.31 REMARK 500 5 ASP A 75 -46.57 -161.45 REMARK 500 6 PRO A 24 86.71 -63.36 REMARK 500 6 SER A 39 -67.05 -156.50 REMARK 500 6 ALA A 74 -60.80 -127.07 REMARK 500 6 GLN B 107 -64.78 -93.46 REMARK 500 6 ASP B 111 -71.93 -71.85 REMARK 500 7 ASN A 21 -38.93 177.14 REMARK 500 7 GLN A 37 34.38 -83.80 REMARK 500 7 SER A 39 -64.15 73.32 REMARK 500 7 ASP A 75 -159.68 64.44 REMARK 500 7 GLN B 107 -62.86 -97.80 REMARK 500 8 ASN A 21 -171.51 -176.87 REMARK 500 8 PRO A 24 98.14 -56.59 REMARK 500 8 SER A 39 -68.08 -173.49 REMARK 500 8 THR A 72 48.22 -145.52 REMARK 500 8 ALA A 74 -75.91 70.69 REMARK 500 8 ASP A 75 -93.80 -124.78 REMARK 500 9 LEU A 23 109.54 -57.26 REMARK 500 9 GLN A 37 32.01 -85.95 REMARK 500 9 SER A 39 -66.95 70.56 REMARK 500 9 LEU A 58 148.36 -171.89 REMARK 500 9 ALA A 74 -72.14 -53.66 REMARK 500 9 ASP A 75 -73.46 -129.77 REMARK 500 10 ASN A 21 47.37 -164.64 REMARK 500 10 VAL A 22 59.67 -119.26 REMARK 500 10 PRO A 24 92.12 -62.72 REMARK 500 10 GLN A 37 39.62 -92.06 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W84 RELATED DB: PDB REMARK 900 STRUCTURE OF PEX14 IN COMPLEX WITH PEX5 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 101-112 IN THIS PDB-ENTRY CORRESPOND TO RESIDUES REMARK 999 66-77 IN THE CORRESPONDING GENBANK ENTRY DBREF 2W85 A 12 15 PDB 2W85 2W85 12 15 DBREF 2W85 A 16 80 UNP O75381 PEX14_HUMAN 16 80 DBREF 2W85 A 81 81 PDB 2W85 2W85 81 81 DBREF 2W85 B 101 112 UNP P40855 PEX19_HUMAN 66 77 SEQRES 1 A 70 GLY ALA MET ALA THR PRO GLY SER GLU ASN VAL LEU PRO SEQRES 2 A 70 ARG GLU PRO LEU ILE ALA THR ALA VAL LYS PHE LEU GLN SEQRES 3 A 70 ASN SER ARG VAL ARG GLN SER PRO LEU ALA THR ARG ARG SEQRES 4 A 70 ALA PHE LEU LYS LYS LYS GLY LEU THR ASP GLU GLU ILE SEQRES 5 A 70 ASP MET ALA PHE GLN GLN SER GLY THR ALA ALA ASP GLU SEQRES 6 A 70 PRO SER SER LEU TRP SEQRES 1 B 12 SER GLN GLU LYS PHE PHE GLN GLU LEU PHE ASP SER HELIX 1 1 ARG A 25 GLN A 37 1 13 HELIX 2 2 PRO A 45 GLY A 57 1 13 HELIX 3 3 THR A 59 GLY A 71 1 13 HELIX 4 4 SER B 101 SER B 112 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1