HEADER ELECTRON TRANSPORT 14-JAN-09 2W88 TITLE PLASTOCYANIN VARIANT WITH N-TERMINAL METHIONINE - OPEN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASTOCYANIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHORMIDIUM LAMINOSUM; SOURCE 3 ORGANISM_TAXID: 32059; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS PROTEIN INTERACTIONS, TRANSPORT, CUPREDOXIN, SELF-ASSEMBLY, METAL- KEYWDS 2 BINDING, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR P.B.CROWLEY,P.M.MATIAS,A.R.KHAN REVDAT 4 13-DEC-23 2W88 1 REMARK LINK REVDAT 3 26-OCT-11 2W88 1 JRNL REVDAT 2 13-JUL-11 2W88 1 VERSN REVDAT 1 27-OCT-09 2W88 0 JRNL AUTH P.B.CROWLEY,P.M.MATIAS,A.R.KHAN,M.ROESSLE,D.I.SVERGUN JRNL TITL METAL-MEDIATED SELF-ASSEMBLY OF A BETA-SANDWICH PROTEIN. JRNL REF CHEMISTRY V. 15 12672 2009 JRNL REFN ISSN 0947-6539 JRNL PMID 19834935 JRNL DOI 10.1002/CHEM.200901410 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0063 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 110.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1356 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 54.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.298 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.237 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.960 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2539 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3408 ; 1.351 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 315 ; 6.249 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;33.592 ;25.143 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 393 ;18.118 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;21.273 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1935 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1586 ; 0.404 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2559 ; 0.771 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 953 ; 1.446 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 849 ; 2.204 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 0 A 105 5 REMARK 3 1 B 0 B 105 5 REMARK 3 1 C 0 C 105 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 424 ; 0.11 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 424 ; 0.14 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 C (A): 424 ; 0.11 ; 0.50 REMARK 3 LOOSE POSITIONAL 1 A (A): 389 ; 0.25 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 389 ; 0.37 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 C (A): 389 ; 0.24 ; 5.00 REMARK 3 MEDIUM THERMAL 1 A (A**2): 424 ; 1.20 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 424 ; 1.22 ; 2.00 REMARK 3 MEDIUM THERMAL 1 C (A**2): 424 ; 0.87 ; 2.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 389 ; 1.33 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 389 ; 1.48 ; 10.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 389 ; 1.11 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 105 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0378 22.2092 -3.3336 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.0370 REMARK 3 T33: 0.0125 T12: 0.0112 REMARK 3 T13: -0.0145 T23: -0.0182 REMARK 3 L TENSOR REMARK 3 L11: 2.8942 L22: 3.1246 REMARK 3 L33: 1.5554 L12: -0.0977 REMARK 3 L13: 0.2872 L23: 0.7371 REMARK 3 S TENSOR REMARK 3 S11: 0.0582 S12: 0.2423 S13: -0.0940 REMARK 3 S21: -0.2023 S22: -0.0483 S23: -0.0209 REMARK 3 S31: 0.0786 S32: -0.0485 S33: -0.0099 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 105 REMARK 3 ORIGIN FOR THE GROUP (A): -22.0845 22.5987 21.7165 REMARK 3 T TENSOR REMARK 3 T11: 0.0509 T22: 0.0509 REMARK 3 T33: 0.0660 T12: -0.0059 REMARK 3 T13: -0.0030 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 2.2347 L22: 1.8816 REMARK 3 L33: 2.9314 L12: -0.1761 REMARK 3 L13: -0.9196 L23: -0.5767 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.2372 S13: -0.1642 REMARK 3 S21: 0.1463 S22: 0.0310 S23: 0.2573 REMARK 3 S31: 0.0518 S32: -0.1447 S33: -0.0297 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 105 REMARK 3 ORIGIN FOR THE GROUP (A): -16.9266 45.7688 9.0380 REMARK 3 T TENSOR REMARK 3 T11: 0.0985 T22: 0.0193 REMARK 3 T33: 0.0483 T12: 0.0207 REMARK 3 T13: -0.0300 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.7975 L22: 3.9180 REMARK 3 L33: 2.4603 L12: 0.0067 REMARK 3 L13: 0.1719 L23: -1.8722 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: 0.1250 S13: 0.2456 REMARK 3 S21: -0.0660 S22: -0.0693 S23: 0.0835 REMARK 3 S31: -0.2426 S32: -0.0708 S33: 0.0436 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES ARE RESIDUALS ONLY. REMARK 4 REMARK 4 2W88 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1290038545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGING PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19857 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 47.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.17000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.58000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3CVB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M ZINC ACETATE, 0.4 M SODIUM REMARK 280 ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -Y,-X,-Z+2/3 REMARK 290 5555 -X+Y,Y,-Z+1/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.66333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.32667 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 63.32667 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.66333 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 31.66333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 -91.08 -119.71 REMARK 500 MET A 97 91.53 -69.56 REMARK 500 ASN B 34 -89.16 -112.40 REMARK 500 ASN C 34 -93.25 -108.74 REMARK 500 MET C 97 88.43 -69.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 108 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 0 N REMARK 620 2 GLU A 1 OE2 96.0 REMARK 620 3 HIS A 24 ND1 134.1 100.0 REMARK 620 4 ASP A 27 OD2 115.4 108.5 99.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 106 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 ND1 REMARK 620 2 CYS A 89 SG 126.2 REMARK 620 3 HIS A 92 ND1 103.9 114.3 REMARK 620 4 MET A 97 SD 95.5 106.8 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 44 OD1 REMARK 620 2 ASP A 45 OD1 71.9 REMARK 620 3 HIS C 61 NE2 105.9 80.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 61 NE2 REMARK 620 2 ASP B 44 OD1 99.9 REMARK 620 3 ASP B 45 OD1 86.5 76.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 109 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 0 O REMARK 620 2 MET B 0 N 90.3 REMARK 620 3 MET B 0 N 87.6 153.1 REMARK 620 4 MET B 0 O 121.2 71.9 86.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 108 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 1 OE2 REMARK 620 2 HIS B 24 ND1 73.1 REMARK 620 3 ASP B 27 OD2 124.1 104.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 106 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 39 ND1 REMARK 620 2 CYS B 89 SG 125.7 REMARK 620 3 HIS B 92 ND1 98.7 109.5 REMARK 620 4 MET B 97 SD 97.5 114.3 109.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 61 NE2 REMARK 620 2 ASP C 44 OD1 102.9 REMARK 620 3 ASP C 45 OD1 81.2 86.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 106 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 39 ND1 REMARK 620 2 CYS C 89 SG 118.4 REMARK 620 3 HIS C 92 ND1 105.2 119.1 REMARK 620 4 MET C 97 SD 95.0 107.6 108.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 108 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET C 0 N REMARK 620 2 GLU C 1 OE2 115.2 REMARK 620 3 HIS C 24 ND1 130.1 95.5 REMARK 620 4 ASP C 27 OD2 104.0 113.7 97.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 109 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BAW RELATED DB: PDB REMARK 900 PLASTOCYANIN FROM PHORMIDIUM LAMINOSUM REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO SIGNAL PEPTIDE PRESENT AND N-TERMINAL INSERTION OF MET0 DBREF 2W88 A 0 0 PDB 2W88 2W88 0 0 DBREF 2W88 A 1 105 UNP Q51883 PLAS_PHOLA 35 139 DBREF 2W88 B 0 0 PDB 2W88 2W88 0 0 DBREF 2W88 B 1 105 UNP Q51883 PLAS_PHOLA 35 139 DBREF 2W88 C 0 0 PDB 2W88 2W88 0 0 DBREF 2W88 C 1 105 UNP Q51883 PLAS_PHOLA 35 139 SEQRES 1 A 106 MET GLU THR PHE THR VAL LYS MET GLY ALA ASP SER GLY SEQRES 2 A 106 LEU LEU GLN PHE GLU PRO ALA ASN VAL THR VAL HIS PRO SEQRES 3 A 106 GLY ASP THR VAL LYS TRP VAL ASN ASN LYS LEU PRO PRO SEQRES 4 A 106 HIS ASN ILE LEU PHE ASP ASP LYS GLN VAL PRO GLY ALA SEQRES 5 A 106 SER LYS GLU LEU ALA ASP LYS LEU SER HIS SER GLN LEU SEQRES 6 A 106 MET PHE SER PRO GLY GLU SER TYR GLU ILE THR PHE SER SEQRES 7 A 106 SER ASP PHE PRO ALA GLY THR TYR THR TYR TYR CYS ALA SEQRES 8 A 106 PRO HIS ARG GLY ALA GLY MET VAL GLY LYS ILE THR VAL SEQRES 9 A 106 GLU GLY SEQRES 1 B 106 MET GLU THR PHE THR VAL LYS MET GLY ALA ASP SER GLY SEQRES 2 B 106 LEU LEU GLN PHE GLU PRO ALA ASN VAL THR VAL HIS PRO SEQRES 3 B 106 GLY ASP THR VAL LYS TRP VAL ASN ASN LYS LEU PRO PRO SEQRES 4 B 106 HIS ASN ILE LEU PHE ASP ASP LYS GLN VAL PRO GLY ALA SEQRES 5 B 106 SER LYS GLU LEU ALA ASP LYS LEU SER HIS SER GLN LEU SEQRES 6 B 106 MET PHE SER PRO GLY GLU SER TYR GLU ILE THR PHE SER SEQRES 7 B 106 SER ASP PHE PRO ALA GLY THR TYR THR TYR TYR CYS ALA SEQRES 8 B 106 PRO HIS ARG GLY ALA GLY MET VAL GLY LYS ILE THR VAL SEQRES 9 B 106 GLU GLY SEQRES 1 C 106 MET GLU THR PHE THR VAL LYS MET GLY ALA ASP SER GLY SEQRES 2 C 106 LEU LEU GLN PHE GLU PRO ALA ASN VAL THR VAL HIS PRO SEQRES 3 C 106 GLY ASP THR VAL LYS TRP VAL ASN ASN LYS LEU PRO PRO SEQRES 4 C 106 HIS ASN ILE LEU PHE ASP ASP LYS GLN VAL PRO GLY ALA SEQRES 5 C 106 SER LYS GLU LEU ALA ASP LYS LEU SER HIS SER GLN LEU SEQRES 6 C 106 MET PHE SER PRO GLY GLU SER TYR GLU ILE THR PHE SER SEQRES 7 C 106 SER ASP PHE PRO ALA GLY THR TYR THR TYR TYR CYS ALA SEQRES 8 C 106 PRO HIS ARG GLY ALA GLY MET VAL GLY LYS ILE THR VAL SEQRES 9 C 106 GLU GLY HET CU A 106 1 HET ZN A 107 1 HET ZN A 108 1 HET CU B 106 1 HET ZN B 107 1 HET ZN B 108 1 HET CU C 106 1 HET ZN C 107 1 HET ZN C 108 1 HET ZN C 109 1 HETNAM CU COPPER (II) ION HETNAM ZN ZINC ION FORMUL 4 CU 3(CU 2+) FORMUL 5 ZN 7(ZN 2+) HELIX 1 1 ASP A 45 ALA A 51 5 7 HELIX 2 2 SER A 52 SER A 60 1 9 HELIX 3 3 HIS A 92 GLY A 96 5 5 HELIX 4 4 ASP B 45 ALA B 51 5 7 HELIX 5 5 SER B 52 SER B 60 1 9 HELIX 6 6 HIS B 92 GLY B 96 5 5 HELIX 7 7 ASP C 44 VAL C 48 5 5 HELIX 8 8 VAL C 48 ALA C 51 5 4 HELIX 9 9 SER C 52 SER C 60 1 9 HELIX 10 10 HIS C 92 GLY C 96 5 5 SHEET 1 AA 4 PHE A 16 GLU A 17 0 SHEET 2 AA 4 THR A 2 MET A 7 -1 O LYS A 6 N GLU A 17 SHEET 3 AA 4 THR A 28 ASN A 33 1 O THR A 28 N PHE A 3 SHEET 4 AA 4 SER A 71 THR A 75 -1 O TYR A 72 N TRP A 31 SHEET 1 AB 5 ASN A 20 VAL A 23 0 SHEET 2 AB 5 VAL A 98 VAL A 103 1 O LYS A 100 N VAL A 21 SHEET 3 AB 5 GLY A 83 TYR A 88 -1 O GLY A 83 N VAL A 103 SHEET 4 AB 5 HIS A 39 PHE A 43 -1 O LEU A 42 N TYR A 88 SHEET 5 AB 5 HIS A 61 MET A 65 -1 O HIS A 61 N ILE A 41 SHEET 1 BA 4 PHE B 16 GLU B 17 0 SHEET 2 BA 4 THR B 2 MET B 7 -1 O LYS B 6 N GLU B 17 SHEET 3 BA 4 THR B 28 ASN B 33 1 O THR B 28 N PHE B 3 SHEET 4 BA 4 SER B 71 THR B 75 -1 O TYR B 72 N TRP B 31 SHEET 1 BB 5 ASN B 20 VAL B 23 0 SHEET 2 BB 5 VAL B 98 VAL B 103 1 O LYS B 100 N VAL B 21 SHEET 3 BB 5 GLY B 83 TYR B 88 -1 O GLY B 83 N VAL B 103 SHEET 4 BB 5 HIS B 39 PHE B 43 -1 O LEU B 42 N TYR B 88 SHEET 5 BB 5 HIS B 61 MET B 65 -1 O HIS B 61 N ILE B 41 SHEET 1 CA 4 PHE C 16 GLU C 17 0 SHEET 2 CA 4 THR C 2 MET C 7 -1 O LYS C 6 N GLU C 17 SHEET 3 CA 4 THR C 28 ASN C 33 1 O THR C 28 N PHE C 3 SHEET 4 CA 4 SER C 71 THR C 75 -1 O TYR C 72 N TRP C 31 SHEET 1 CB 3 ASN C 20 VAL C 23 0 SHEET 2 CB 3 VAL C 98 VAL C 103 1 O LYS C 100 N VAL C 21 SHEET 3 CB 3 GLY C 83 TYR C 88 -1 O GLY C 83 N VAL C 103 SHEET 1 CC 2 HIS C 39 ILE C 41 0 SHEET 2 CC 2 HIS C 61 MET C 65 -1 O HIS C 61 N ILE C 41 LINK N MET A 0 ZN ZN A 108 4554 1555 2.06 LINK OE2 GLU A 1 ZN ZN A 108 1555 1555 2.02 LINK ND1 HIS A 24 ZN ZN A 108 1555 1555 2.13 LINK OD2 ASP A 27 ZN ZN A 108 1555 1555 2.02 LINK ND1 HIS A 39 CU CU A 106 1555 1555 2.08 LINK OD1 ASP A 44 ZN ZN B 107 1555 1555 2.00 LINK OD1 ASP A 45 ZN ZN B 107 1555 1555 2.03 LINK NE2 HIS A 61 ZN ZN A 107 1555 1555 2.11 LINK SG CYS A 89 CU CU A 106 1555 1555 2.29 LINK ND1 HIS A 92 CU CU A 106 1555 1555 2.07 LINK SD MET A 97 CU CU A 106 1555 1555 2.33 LINK ZN ZN A 107 OD1 ASP B 44 1555 1555 2.00 LINK ZN ZN A 107 OD1 ASP B 45 1555 1555 2.03 LINK O MET B 0 ZN ZN C 109 1555 1555 1.99 LINK N MET B 0 ZN ZN C 109 4555 1555 2.44 LINK N MET B 0 ZN ZN C 109 1555 1555 2.15 LINK O MET B 0 ZN ZN C 109 4555 1555 2.45 LINK OE2 GLU B 1 ZN ZN C 108 4555 1555 1.95 LINK ND1 HIS B 24 ZN ZN C 108 1555 1555 2.16 LINK OD2 ASP B 27 ZN ZN C 108 1555 1555 2.02 LINK ND1 HIS B 39 CU CU C 106 1555 1555 2.08 LINK NE2 HIS B 61 ZN ZN C 107 1555 1555 2.12 LINK SG CYS B 89 CU CU C 106 1555 1555 2.28 LINK ND1 HIS B 92 CU CU C 106 1555 1555 2.08 LINK SD MET B 97 CU CU C 106 1555 1555 2.32 LINK CU CU B 106 ND1 HIS C 39 1555 1555 2.04 LINK CU CU B 106 SG CYS C 89 1555 1555 2.29 LINK CU CU B 106 ND1 HIS C 92 1555 1555 2.09 LINK CU CU B 106 SD MET C 97 1555 1555 2.31 LINK ZN ZN B 107 NE2 HIS C 61 1555 1555 2.12 LINK ZN ZN B 108 N MET C 0 1555 6565 2.12 LINK ZN ZN B 108 OE2 GLU C 1 1555 1555 2.01 LINK ZN ZN B 108 ND1 HIS C 24 1555 1555 2.13 LINK ZN ZN B 108 OD2 ASP C 27 1555 1555 2.01 LINK OD1 ASP C 44 ZN ZN C 107 1555 1555 2.01 LINK OD1 ASP C 45 ZN ZN C 107 1555 1555 2.04 CISPEP 1 GLU A 17 PRO A 18 0 -5.73 CISPEP 2 PRO A 37 PRO A 38 0 6.08 CISPEP 3 GLU B 17 PRO B 18 0 4.89 CISPEP 4 PRO B 37 PRO B 38 0 4.11 CISPEP 5 GLU C 17 PRO C 18 0 -0.84 CISPEP 6 PRO C 37 PRO C 38 0 0.69 SITE 1 AC1 4 HIS A 39 CYS A 89 HIS A 92 MET A 97 SITE 1 AC2 3 HIS A 61 ASP B 44 ASP B 45 SITE 1 AC3 4 MET A 0 GLU A 1 HIS A 24 ASP A 27 SITE 1 AC4 4 HIS C 39 CYS C 89 HIS C 92 MET C 97 SITE 1 AC5 3 ASP A 44 ASP A 45 HIS C 61 SITE 1 AC6 4 MET C 0 GLU C 1 HIS C 24 ASP C 27 SITE 1 AC7 4 HIS B 39 CYS B 89 HIS B 92 MET B 97 SITE 1 AC8 3 HIS B 61 ASP C 44 ASP C 45 SITE 1 AC9 3 GLU B 1 HIS B 24 ASP B 27 SITE 1 BC1 1 MET B 0 CRYST1 127.700 127.700 94.990 90.00 90.00 120.00 P 31 1 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007831 0.004521 0.000000 0.00000 SCALE2 0.000000 0.009042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010527 0.00000 MTRIX1 1 0.790620 0.296520 0.535720 -17.38811 1 MTRIX2 1 -0.349040 -0.500600 0.792200 32.12272 1 MTRIX3 1 0.503080 -0.813310 -0.292290 44.87580 1 MTRIX1 2 0.793970 -0.319750 0.517080 1.46014 1 MTRIX2 2 0.319460 -0.504210 -0.802320 58.18138 1 MTRIX3 2 0.517260 0.802210 -0.298180 -3.57527 1