data_2W89 # _entry.id 2W89 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2W89 pdb_00002w89 10.2210/pdb2w89/pdb PDBE EBI-37953 ? ? WWPDB D_1290037953 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2W89 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2009-01-15 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eichert, A.' 1 'Schreiber, A.' 2 'Fuerste, J.P.' 3 'Perbandt, M.' 4 'Betzel, C.' 5 'Erdmann, V.A.' 6 'Foerster, C.' 7 # _citation.id primary _citation.title 'Crystal Structure of the E. Coli tRNA(Arg) Aminoacyl Stem Isoacceptor Rr-1660 at 2.0 A Resolution.' _citation.journal_abbrev Biochem.Biophys.Res.Commun. _citation.journal_volume 385 _citation.page_first 84 _citation.page_last ? _citation.year 2009 _citation.journal_id_ASTM BBRCA9 _citation.country US _citation.journal_id_ISSN 0006-291X _citation.journal_id_CSD 0146 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 19426710 _citation.pdbx_database_id_DOI 10.1016/J.BBRC.2009.04.158 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Eichert, A.' 1 ? primary 'Perbandt, M.' 2 ? primary 'Oberthur, D.' 3 ? primary 'Schreiber, A.' 4 ? primary 'Furste, J.P.' 5 ? primary 'Betzel, C.' 6 ? primary 'Erdmann, V.A.' 7 ? primary 'Forster, C.' 8 ? # _cell.entry_id 2W89 _cell.length_a 26.368 _cell.length_b 28.984 _cell.length_c 29.134 _cell.angle_alpha 105.89 _cell.angle_beta 98.76 _cell.angle_gamma 97.85 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2W89 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*GP*CP*AP*UP*CP*CP*GP)-3'" 2196.371 2 ? ? 'AMINOACYL STEM, RESIDUES 901-907' ? 2 polymer syn "5'-R(*CP*GP*GP*AP*UP*GP*CP)-3'" 2236.395 2 ? ? 'AMINOACYL STEM, RESIDUES 966-972' ? 3 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 4 water nat water 18.015 88 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'TRNAARG RR-1660 ACCEPTOR STEM' 2 'TRNAARG RR-1660 ACCEPTOR STEM' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GCAUCCG GCAUCCG A,C ? 2 polyribonucleotide no no CGGAUGC CGGAUGC B,D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 A n 1 4 U n 1 5 C n 1 6 C n 1 7 G n 2 1 C n 2 2 G n 2 3 G n 2 4 A n 2 5 U n 2 6 G n 2 7 C n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? 'ESCHERICHIA COLI' ? 562 ? 2 1 sample ? ? 'ESCHERICHIA COLI' ? 562 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2W89 1 ? ? 2W89 ? 2 PDB 2W89 2 ? ? 2W89 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2W89 A 1 ? 7 ? 2W89 901 ? 907 ? 901 907 2 2 2W89 B 1 ? 7 ? 2W89 966 ? 972 ? 966 972 3 1 2W89 C 1 ? 7 ? 2W89 901 ? 907 ? 901 907 4 2 2W89 D 1 ? 7 ? 2W89 966 ? 972 ? 966 972 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2W89 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.34 _exptl_crystal.density_percent_sol 59.6 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '10 MM MAGNESIUM CHLORIDE, 50 MM MES, PH 5.6, 2 M LITHIUM SULFATE, 294K, CRYOPROTECTANT 20 % (V/V) GLYCEROL' # _diffrn.id 1 _diffrn.ambient_temp 203 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2008-07-31 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength 1.000 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2W89 _reflns.observed_criterion_sigma_I 1.5 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 40.00 _reflns.d_resolution_high 1.70 _reflns.number_obs 7118 _reflns.number_all ? _reflns.percent_possible_obs 95.0 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.20 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 1.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.73 _reflns_shell.percent_possible_all 93.2 _reflns_shell.Rmerge_I_obs 0.16 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.90 _reflns_shell.pdbx_redundancy 1.7 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2W89 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 5058 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.92 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 97.9 _refine.ls_R_factor_obs 0.214 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.212 _refine.ls_R_factor_R_free 0.255 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 267 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.946 _refine.B_iso_mean 26.21 _refine.aniso_B[1][1] 0.00000 _refine.aniso_B[2][2] 0.00000 _refine.aniso_B[3][3] 0.00000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2VUQ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.234 _refine.pdbx_overall_ESU_R_Free 0.192 _refine.overall_SU_ML 0.136 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.154 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 586 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 88 _refine_hist.number_atoms_total 680 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 20.92 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.021 ? 657 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.567 3.000 ? 1015 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.090 0.200 ? 112 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 290 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.169 0.200 ? 280 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.270 0.200 ? 427 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.233 0.200 ? 58 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.172 0.200 ? 43 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.174 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.282 3.000 ? 941 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.864 4.500 ? 1015 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.05 _refine_ls_shell.number_reflns_R_work 381 _refine_ls_shell.R_factor_R_work 0.2780 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.2190 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 18 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2W89 _struct.title 'Crystal structure of the E.coli tRNAArg aminoacyl stem issoacceptor RR-1660 at 2.0 Angstroem resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2W89 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'TRNA ACCEPTOR STEM, RNA, TRNAARG, HYDRATION, TRNA IDENTITY' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 4 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 901 B C 972 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 901 B C 972 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 901 B C 972 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 B G 6 N1 ? ? A C 902 B G 971 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 B G 6 O6 ? ? A C 902 B G 971 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 B G 6 N2 ? ? A C 902 B G 971 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 5 N3 ? ? A A 903 B U 970 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 5 O4 ? ? A A 903 B U 970 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 904 B A 969 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 4 N6 ? ? A U 904 B A 969 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 905 B G 968 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 905 B G 968 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 905 B G 968 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 906 B G 967 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 906 B G 967 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 906 B G 967 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 1 N3 ? ? A G 907 B C 966 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 1 O2 ? ? A G 907 B C 966 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 1 N4 ? ? A G 907 B C 966 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C G 1 N1 ? ? ? 1_555 D C 7 N3 ? ? C G 901 D C 972 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C G 1 N2 ? ? ? 1_555 D C 7 O2 ? ? C G 901 D C 972 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C G 1 O6 ? ? ? 1_555 D C 7 N4 ? ? C G 901 D C 972 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C C 2 N3 ? ? ? 1_555 D G 6 N1 ? ? C C 902 D G 971 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C C 2 N4 ? ? ? 1_555 D G 6 O6 ? ? C C 902 D G 971 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C C 2 O2 ? ? ? 1_555 D G 6 N2 ? ? C C 902 D G 971 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C A 3 N1 ? ? ? 1_555 D U 5 N3 ? ? C A 903 D U 970 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C A 3 N6 ? ? ? 1_555 D U 5 O4 ? ? C A 903 D U 970 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C U 4 N3 ? ? ? 1_555 D A 4 N1 ? ? C U 904 D A 969 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C U 4 O4 ? ? ? 1_555 D A 4 N6 ? ? C U 904 D A 969 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C C 5 N3 ? ? ? 1_555 D G 3 N1 ? ? C C 905 D G 968 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C C 5 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 905 D G 968 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C C 5 O2 ? ? ? 1_555 D G 3 N2 ? ? C C 905 D G 968 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C C 6 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 906 D G 967 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C C 6 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 906 D G 967 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C C 6 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 906 D G 967 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G 7 N1 ? ? ? 1_555 D C 1 N3 ? ? C G 907 D C 966 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C G 7 N2 ? ? ? 1_555 D C 1 O2 ? ? C G 907 D C 966 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C G 7 O6 ? ? ? 1_555 D C 1 N4 ? ? C G 907 D C 966 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id B _struct_site.pdbx_auth_comp_id GOL _struct_site.pdbx_auth_seq_id 1973 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE GOL B 1973' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 A B 4 ? A B 969 . ? 1_555 ? 2 AC1 6 U B 5 ? U B 970 . ? 1_555 ? 3 AC1 6 HOH G . ? HOH B 2023 . ? 1_555 ? 4 AC1 6 A C 3 ? A C 903 . ? 1_555 ? 5 AC1 6 G D 6 ? G D 971 . ? 1_555 ? 6 AC1 6 C D 7 ? C D 972 . ? 1_555 ? # _database_PDB_matrix.entry_id 2W89 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2W89 _atom_sites.fract_transf_matrix[1][1] 0.037925 _atom_sites.fract_transf_matrix[1][2] 0.005229 _atom_sites.fract_transf_matrix[1][3] 0.007778 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034828 _atom_sites.fract_transf_matrix[2][3] 0.010989 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.036417 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 901 901 G G A . n A 1 2 C 2 902 902 C C A . n A 1 3 A 3 903 903 A A A . n A 1 4 U 4 904 904 U U A . n A 1 5 C 5 905 905 C C A . n A 1 6 C 6 906 906 C C A . n A 1 7 G 7 907 907 G G A . n B 2 1 C 1 966 966 C C B . n B 2 2 G 2 967 967 G G B . n B 2 3 G 3 968 968 G G B . n B 2 4 A 4 969 969 A A B . n B 2 5 U 5 970 970 U U B . n B 2 6 G 6 971 971 G G B . n B 2 7 C 7 972 972 C C B . n C 1 1 G 1 901 901 G G C . n C 1 2 C 2 902 902 C C C . n C 1 3 A 3 903 903 A A C . n C 1 4 U 4 904 904 U U C . n C 1 5 C 5 905 905 C C C . n C 1 6 C 6 906 906 C C C . n C 1 7 G 7 907 907 G G C . n D 2 1 C 1 966 966 C C D . n D 2 2 G 2 967 967 G G D . n D 2 3 G 3 968 968 G G D . n D 2 4 A 4 969 969 A A D . n D 2 5 U 5 970 970 U U D . n D 2 6 G 6 971 971 G G D . n D 2 7 C 7 972 972 C C D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GOL 1 1973 1973 GOL GOL B . F 4 HOH 1 2001 2001 HOH HOH A . F 4 HOH 2 2002 2002 HOH HOH A . F 4 HOH 3 2003 2003 HOH HOH A . F 4 HOH 4 2004 2004 HOH HOH A . F 4 HOH 5 2005 2005 HOH HOH A . F 4 HOH 6 2006 2006 HOH HOH A . F 4 HOH 7 2007 2007 HOH HOH A . F 4 HOH 8 2008 2008 HOH HOH A . F 4 HOH 9 2009 2009 HOH HOH A . F 4 HOH 10 2010 2010 HOH HOH A . F 4 HOH 11 2011 2011 HOH HOH A . F 4 HOH 12 2012 2012 HOH HOH A . F 4 HOH 13 2013 2013 HOH HOH A . F 4 HOH 14 2014 2014 HOH HOH A . F 4 HOH 15 2015 2015 HOH HOH A . F 4 HOH 16 2016 2016 HOH HOH A . F 4 HOH 17 2017 2017 HOH HOH A . F 4 HOH 18 2018 2018 HOH HOH A . F 4 HOH 19 2019 2019 HOH HOH A . F 4 HOH 20 2020 2020 HOH HOH A . F 4 HOH 21 2021 2021 HOH HOH A . F 4 HOH 22 2022 2022 HOH HOH A . F 4 HOH 23 2023 2023 HOH HOH A . F 4 HOH 24 2024 2024 HOH HOH A . G 4 HOH 1 2001 2001 HOH HOH B . G 4 HOH 2 2002 2002 HOH HOH B . G 4 HOH 3 2003 2003 HOH HOH B . G 4 HOH 4 2004 2004 HOH HOH B . G 4 HOH 5 2005 2005 HOH HOH B . G 4 HOH 6 2006 2006 HOH HOH B . G 4 HOH 7 2007 2007 HOH HOH B . G 4 HOH 8 2008 2008 HOH HOH B . G 4 HOH 9 2009 2009 HOH HOH B . G 4 HOH 10 2010 2010 HOH HOH B . G 4 HOH 11 2011 2011 HOH HOH B . G 4 HOH 12 2012 2012 HOH HOH B . G 4 HOH 13 2013 2013 HOH HOH B . G 4 HOH 14 2014 2014 HOH HOH B . G 4 HOH 15 2015 2015 HOH HOH B . G 4 HOH 16 2016 2016 HOH HOH B . G 4 HOH 17 2017 2017 HOH HOH B . G 4 HOH 18 2018 2018 HOH HOH B . G 4 HOH 19 2019 2019 HOH HOH B . G 4 HOH 20 2020 2020 HOH HOH B . G 4 HOH 21 2021 2021 HOH HOH B . G 4 HOH 22 2022 2022 HOH HOH B . G 4 HOH 23 2023 2023 HOH HOH B . H 4 HOH 1 2001 2001 HOH HOH C . H 4 HOH 2 2002 2002 HOH HOH C . H 4 HOH 3 2003 2003 HOH HOH C . H 4 HOH 4 2004 2004 HOH HOH C . H 4 HOH 5 2005 2005 HOH HOH C . H 4 HOH 6 2006 2006 HOH HOH C . H 4 HOH 7 2007 2007 HOH HOH C . H 4 HOH 8 2008 2008 HOH HOH C . H 4 HOH 9 2009 2009 HOH HOH C . H 4 HOH 10 2010 2010 HOH HOH C . H 4 HOH 11 2011 2011 HOH HOH C . H 4 HOH 12 2012 2012 HOH HOH C . H 4 HOH 13 2013 2013 HOH HOH C . H 4 HOH 14 2014 2014 HOH HOH C . H 4 HOH 15 2015 2015 HOH HOH C . H 4 HOH 16 2016 2016 HOH HOH C . H 4 HOH 17 2017 2017 HOH HOH C . H 4 HOH 18 2018 2018 HOH HOH C . H 4 HOH 19 2019 2019 HOH HOH C . H 4 HOH 20 2020 2020 HOH HOH C . H 4 HOH 21 2021 2021 HOH HOH C . H 4 HOH 22 2022 2022 HOH HOH C . H 4 HOH 23 2023 2023 HOH HOH C . I 4 HOH 1 2001 2001 HOH HOH D . I 4 HOH 2 2002 2002 HOH HOH D . I 4 HOH 3 2003 2003 HOH HOH D . I 4 HOH 4 2004 2004 HOH HOH D . I 4 HOH 5 2005 2005 HOH HOH D . I 4 HOH 6 2006 2006 HOH HOH D . I 4 HOH 7 2007 2007 HOH HOH D . I 4 HOH 8 2008 2008 HOH HOH D . I 4 HOH 9 2009 2009 HOH HOH D . I 4 HOH 10 2010 2010 HOH HOH D . I 4 HOH 11 2011 2011 HOH HOH D . I 4 HOH 12 2012 2012 HOH HOH D . I 4 HOH 13 2013 2013 HOH HOH D . I 4 HOH 14 2014 2014 HOH HOH D . I 4 HOH 15 2015 2015 HOH HOH D . I 4 HOH 16 2016 2016 HOH HOH D . I 4 HOH 17 2017 2017 HOH HOH D . I 4 HOH 18 2018 2018 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G 2 1 C,D,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 700 ? 1 MORE -3.3 ? 1 'SSA (A^2)' 2750 ? 2 'ABSA (A^2)' 870 ? 2 MORE -3.0 ? 2 'SSA (A^2)' 2770 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-11-17 2 'Structure model' 1 1 2015-01-28 3 'Structure model' 1 2 2019-05-08 4 'Structure model' 1 3 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Derived calculations' 2 2 'Structure model' 'Non-polymer description' 3 2 'Structure model' 'Refinement description' 4 2 'Structure model' 'Version format compliance' 5 3 'Structure model' 'Data collection' 6 3 'Structure model' 'Experimental preparation' 7 3 'Structure model' Other 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Database references' 10 4 'Structure model' 'Derived calculations' 11 4 'Structure model' Other 12 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' exptl_crystal_grow 2 3 'Structure model' pdbx_database_proc 3 3 'Structure model' pdbx_database_status 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_database_status 8 4 'Structure model' pdbx_initial_refinement_model 9 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_exptl_crystal_grow.temp' 2 3 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_database_status.status_code_sf' 6 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 7 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 8 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C2 A G 901 ? ? N3 A G 901 ? ? 1.392 1.323 0.069 0.008 N 2 1 N1 A G 907 ? ? C2 A G 907 ? ? 1.428 1.373 0.055 0.008 N 3 1 C2 A G 907 ? ? N3 A G 907 ? ? 1.385 1.323 0.062 0.008 N 4 1 C6 A G 907 ? ? N1 A G 907 ? ? 1.440 1.391 0.049 0.007 N 5 1 C6 B G 967 ? ? N1 B G 967 ? ? 1.435 1.391 0.044 0.007 N 6 1 C5 B A 969 ? ? C6 B A 969 ? ? 1.339 1.406 -0.067 0.009 N 7 1 C6 B G 971 ? ? N1 B G 971 ? ? 1.435 1.391 0.044 0.007 N 8 1 N3 B C 972 ? ? C4 B C 972 ? ? 1.288 1.335 -0.047 0.007 N 9 1 C2 C G 907 ? ? N3 C G 907 ? ? 1.373 1.323 0.050 0.008 N 10 1 C6 D G 967 ? ? N1 D G 967 ? ? 1.434 1.391 0.043 0.007 N 11 1 C6 D A 969 ? ? N1 D A 969 ? ? 1.405 1.351 0.054 0.007 N 12 1 C6 D G 971 ? ? N1 D G 971 ? ? 1.441 1.391 0.050 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 A G 901 ? ? C6 A G 901 ? ? N1 A G 901 ? ? 114.50 111.50 3.00 0.50 N 2 1 N1 A G 901 ? ? C6 A G 901 ? ? O6 A G 901 ? ? 115.89 119.90 -4.01 0.60 N 3 1 "O4'" A U 904 ? ? "C1'" A U 904 ? ? N1 A U 904 ? ? 114.76 108.50 6.26 0.70 N 4 1 "O4'" A C 905 ? ? "C1'" A C 905 ? ? N1 A C 905 ? ? 102.29 108.20 -5.91 0.80 N 5 1 N1 A C 905 ? ? C2 A C 905 ? ? N3 A C 905 ? ? 114.89 119.20 -4.31 0.70 N 6 1 C2 A C 905 ? ? N3 A C 905 ? ? C4 A C 905 ? ? 123.49 119.90 3.59 0.50 N 7 1 C4 A C 905 ? ? C5 A C 905 ? ? C6 A C 905 ? ? 113.22 117.40 -4.18 0.50 N 8 1 C5 A C 905 ? ? C6 A C 905 ? ? N1 A C 905 ? ? 124.52 121.00 3.52 0.50 N 9 1 N1 A C 905 ? ? C2 A C 905 ? ? O2 A C 905 ? ? 122.79 118.90 3.89 0.60 N 10 1 N1 A C 906 ? ? C2 A C 906 ? ? O2 A C 906 ? ? 124.23 118.90 5.33 0.60 N 11 1 N3 A C 906 ? ? C2 A C 906 ? ? O2 A C 906 ? ? 117.50 121.90 -4.40 0.70 N 12 1 N3 A C 906 ? ? C4 A C 906 ? ? N4 A C 906 ? ? 112.03 118.00 -5.97 0.70 N 13 1 C5 A C 906 ? ? C4 A C 906 ? ? N4 A C 906 ? ? 125.42 120.20 5.22 0.70 N 14 1 C6 A G 907 ? ? N1 A G 907 ? ? C2 A G 907 ? ? 121.08 125.10 -4.02 0.60 N 15 1 C5 A G 907 ? ? C6 A G 907 ? ? N1 A G 907 ? ? 115.31 111.50 3.81 0.50 N 16 1 N1 A G 907 ? ? C6 A G 907 ? ? O6 A G 907 ? ? 123.97 119.90 4.07 0.60 N 17 1 C5 A G 907 ? ? C6 A G 907 ? ? O6 A G 907 ? ? 120.71 128.60 -7.89 0.60 N 18 1 "O4'" B C 966 ? ? "C1'" B C 966 ? ? N1 B C 966 ? ? 113.94 108.50 5.44 0.70 N 19 1 "C3'" B G 967 ? ? "C2'" B G 967 ? ? "C1'" B G 967 ? ? 97.06 101.30 -4.24 0.70 N 20 1 C4 B G 967 ? ? C5 B G 967 ? ? N7 B G 967 ? ? 113.73 110.80 2.93 0.40 N 21 1 N1 B G 967 ? ? C6 B G 967 ? ? O6 B G 967 ? ? 125.41 119.90 5.51 0.60 N 22 1 C5 B G 967 ? ? C6 B G 967 ? ? O6 B G 967 ? ? 121.12 128.60 -7.48 0.60 N 23 1 C4 B A 969 ? ? C5 B A 969 ? ? N7 B A 969 ? ? 115.25 110.70 4.55 0.50 N 24 1 C5 B A 969 ? ? N7 B A 969 ? ? C8 B A 969 ? ? 100.09 103.90 -3.81 0.50 N 25 1 N9 B A 969 ? ? C4 B A 969 ? ? C5 B A 969 ? ? 102.84 105.80 -2.96 0.40 N 26 1 C6 B A 969 ? ? C5 B A 969 ? ? N7 B A 969 ? ? 127.34 132.30 -4.96 0.70 N 27 1 N1 B A 969 ? ? C6 B A 969 ? ? N6 B A 969 ? ? 126.77 118.60 8.17 0.60 N 28 1 C5 B A 969 ? ? C6 B A 969 ? ? N6 B A 969 ? ? 114.75 123.70 -8.95 0.80 N 29 1 "C1'" B U 970 ? ? "O4'" B U 970 ? ? "C4'" B U 970 ? ? 104.14 109.70 -5.56 0.70 N 30 1 "O4'" B G 971 ? ? "C1'" B G 971 ? ? N9 B G 971 ? ? 113.62 108.50 5.12 0.70 N 31 1 "O4'" B C 972 ? ? "C1'" B C 972 ? ? N1 B C 972 ? ? 113.14 108.50 4.64 0.70 N 32 1 N1 B C 972 ? ? C2 B C 972 ? ? O2 B C 972 ? ? 123.35 118.90 4.45 0.60 N 33 1 N3 B C 972 ? ? C2 B C 972 ? ? O2 B C 972 ? ? 117.03 121.90 -4.87 0.70 N 34 1 N3 B C 972 ? ? C4 B C 972 ? ? N4 B C 972 ? ? 108.61 118.00 -9.39 0.70 N 35 1 C5 B C 972 ? ? C4 B C 972 ? ? N4 B C 972 ? ? 128.40 120.20 8.20 0.70 N 36 1 C4 C G 901 ? ? C5 C G 901 ? ? N7 C G 901 ? ? 108.30 110.80 -2.50 0.40 N 37 1 "O4'" C C 902 ? ? "C1'" C C 902 ? ? N1 C C 902 ? ? 116.40 108.50 7.90 0.70 N 38 1 N1 C C 902 ? ? C2 C C 902 ? ? O2 C C 902 ? ? 122.83 118.90 3.93 0.60 N 39 1 N3 C C 902 ? ? C2 C C 902 ? ? O2 C C 902 ? ? 117.41 121.90 -4.49 0.70 N 40 1 N3 C C 902 ? ? C4 C C 902 ? ? N4 C C 902 ? ? 113.14 118.00 -4.86 0.70 N 41 1 C5 C C 902 ? ? C4 C C 902 ? ? N4 C C 902 ? ? 126.17 120.20 5.97 0.70 N 42 1 N1 C A 903 ? ? C2 C A 903 ? ? N3 C A 903 ? ? 126.27 129.30 -3.03 0.50 N 43 1 "O4'" C U 904 ? ? "C1'" C U 904 ? ? N1 C U 904 ? ? 114.76 108.50 6.26 0.70 N 44 1 C6 C U 904 ? ? N1 C U 904 ? ? C2 C U 904 ? ? 117.17 121.00 -3.83 0.60 N 45 1 N3 C U 904 ? ? C2 C U 904 ? ? O2 C U 904 ? ? 116.65 122.20 -5.55 0.70 N 46 1 C5 C U 904 ? ? C4 C U 904 ? ? O4 C U 904 ? ? 130.89 125.90 4.99 0.60 N 47 1 "O4'" C C 906 ? ? "C1'" C C 906 ? ? N1 C C 906 ? ? 114.57 108.50 6.07 0.70 N 48 1 N3 C C 906 ? ? C4 C C 906 ? ? N4 C C 906 ? ? 112.57 118.00 -5.43 0.70 N 49 1 C5 C C 906 ? ? C4 C C 906 ? ? N4 C C 906 ? ? 124.92 120.20 4.72 0.70 N 50 1 C5 C G 907 ? ? C6 C G 907 ? ? N1 C G 907 ? ? 114.78 111.50 3.28 0.50 N 51 1 C5 C G 907 ? ? C6 C G 907 ? ? O6 C G 907 ? ? 124.88 128.60 -3.72 0.60 N 52 1 "O4'" D C 966 ? ? "C1'" D C 966 ? ? N1 D C 966 ? ? 112.73 108.50 4.23 0.70 N 53 1 N1 D C 966 ? ? C2 D C 966 ? ? O2 D C 966 ? ? 123.45 118.90 4.55 0.60 N 54 1 N3 D C 966 ? ? C2 D C 966 ? ? O2 D C 966 ? ? 117.55 121.90 -4.35 0.70 N 55 1 "O4'" D G 967 ? ? "C1'" D G 967 ? ? N9 D G 967 ? ? 114.58 108.50 6.08 0.70 N 56 1 C5 D G 967 ? ? C6 D G 967 ? ? O6 D G 967 ? ? 124.48 128.60 -4.12 0.60 N 57 1 C2 D A 969 ? ? N3 D A 969 ? ? C4 D A 969 ? ? 107.36 110.60 -3.24 0.50 N 58 1 N1 D A 969 ? ? C6 D A 969 ? ? N6 D A 969 ? ? 125.71 118.60 7.11 0.60 N 59 1 C5 D A 969 ? ? C6 D A 969 ? ? N6 D A 969 ? ? 116.74 123.70 -6.96 0.80 N 60 1 C4 D G 971 ? ? C5 D G 971 ? ? N7 D G 971 ? ? 113.55 110.80 2.75 0.40 N 61 1 C5 D G 971 ? ? N7 D G 971 ? ? C8 D G 971 ? ? 100.85 104.30 -3.45 0.50 N 62 1 N1 D G 971 ? ? C6 D G 971 ? ? O6 D G 971 ? ? 124.52 119.90 4.62 0.60 N 63 1 C5 D G 971 ? ? C6 D G 971 ? ? O6 D G 971 ? ? 122.26 128.60 -6.34 0.60 N 64 1 "O4'" D C 972 ? ? "C1'" D C 972 ? ? N1 D C 972 ? ? 116.74 108.50 8.24 0.70 N 65 1 N3 D C 972 ? ? C2 D C 972 ? ? O2 D C 972 ? ? 117.32 121.90 -4.58 0.70 N 66 1 N3 D C 972 ? ? C4 D C 972 ? ? N4 D C 972 ? ? 111.72 118.00 -6.28 0.70 N 67 1 C5 D C 972 ? ? C4 D C 972 ? ? N4 D C 972 ? ? 124.78 120.20 4.58 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GOL C1 C N N 111 GOL O1 O N N 112 GOL C2 C N N 113 GOL O2 O N N 114 GOL C3 C N N 115 GOL O3 O N N 116 GOL H11 H N N 117 GOL H12 H N N 118 GOL HO1 H N N 119 GOL H2 H N N 120 GOL HO2 H N N 121 GOL H31 H N N 122 GOL H32 H N N 123 GOL HO3 H N N 124 HOH O O N N 125 HOH H1 H N N 126 HOH H2 H N N 127 U OP3 O N N 128 U P P N N 129 U OP1 O N N 130 U OP2 O N N 131 U "O5'" O N N 132 U "C5'" C N N 133 U "C4'" C N R 134 U "O4'" O N N 135 U "C3'" C N S 136 U "O3'" O N N 137 U "C2'" C N R 138 U "O2'" O N N 139 U "C1'" C N R 140 U N1 N N N 141 U C2 C N N 142 U O2 O N N 143 U N3 N N N 144 U C4 C N N 145 U O4 O N N 146 U C5 C N N 147 U C6 C N N 148 U HOP3 H N N 149 U HOP2 H N N 150 U "H5'" H N N 151 U "H5''" H N N 152 U "H4'" H N N 153 U "H3'" H N N 154 U "HO3'" H N N 155 U "H2'" H N N 156 U "HO2'" H N N 157 U "H1'" H N N 158 U H3 H N N 159 U H5 H N N 160 U H6 H N N 161 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GOL C1 O1 sing N N 116 GOL C1 C2 sing N N 117 GOL C1 H11 sing N N 118 GOL C1 H12 sing N N 119 GOL O1 HO1 sing N N 120 GOL C2 O2 sing N N 121 GOL C2 C3 sing N N 122 GOL C2 H2 sing N N 123 GOL O2 HO2 sing N N 124 GOL C3 O3 sing N N 125 GOL C3 H31 sing N N 126 GOL C3 H32 sing N N 127 GOL O3 HO3 sing N N 128 HOH O H1 sing N N 129 HOH O H2 sing N N 130 U OP3 P sing N N 131 U OP3 HOP3 sing N N 132 U P OP1 doub N N 133 U P OP2 sing N N 134 U P "O5'" sing N N 135 U OP2 HOP2 sing N N 136 U "O5'" "C5'" sing N N 137 U "C5'" "C4'" sing N N 138 U "C5'" "H5'" sing N N 139 U "C5'" "H5''" sing N N 140 U "C4'" "O4'" sing N N 141 U "C4'" "C3'" sing N N 142 U "C4'" "H4'" sing N N 143 U "O4'" "C1'" sing N N 144 U "C3'" "O3'" sing N N 145 U "C3'" "C2'" sing N N 146 U "C3'" "H3'" sing N N 147 U "O3'" "HO3'" sing N N 148 U "C2'" "O2'" sing N N 149 U "C2'" "C1'" sing N N 150 U "C2'" "H2'" sing N N 151 U "O2'" "HO2'" sing N N 152 U "C1'" N1 sing N N 153 U "C1'" "H1'" sing N N 154 U N1 C2 sing N N 155 U N1 C6 sing N N 156 U C2 O2 doub N N 157 U C2 N3 sing N N 158 U N3 C4 sing N N 159 U N3 H3 sing N N 160 U C4 O4 doub N N 161 U C4 C5 sing N N 162 U C5 C6 doub N N 163 U C5 H5 sing N N 164 U C6 H6 sing N N 165 # _ndb_struct_conf_na.entry_id 2W89 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 7 1_555 -0.309 -0.329 -0.113 -3.619 -6.418 -5.928 1 A_G901:C972_B A 901 ? B 972 ? 19 1 1 A C 2 1_555 B G 6 1_555 0.070 -0.487 -0.007 5.595 -10.973 -1.795 2 A_C902:G971_B A 902 ? B 971 ? 19 1 1 A A 3 1_555 B U 5 1_555 0.571 -0.302 -0.008 -7.355 -5.278 5.630 3 A_A903:U970_B A 903 ? B 970 ? 20 1 1 A U 4 1_555 B A 4 1_555 -0.466 -0.221 0.068 -0.426 -15.717 4.887 4 A_U904:A969_B A 904 ? B 969 ? 20 1 1 A C 5 1_555 B G 3 1_555 0.151 -0.301 -0.008 4.691 -5.582 4.406 5 A_C905:G968_B A 905 ? B 968 ? 19 1 1 A C 6 1_555 B G 2 1_555 0.137 -0.138 0.066 -2.140 -10.007 3.885 6 A_C906:G967_B A 906 ? B 967 ? 19 1 1 A G 7 1_555 B C 1 1_555 0.078 -0.468 -0.051 -1.109 -3.665 -2.884 7 A_G907:C966_B A 907 ? B 966 ? 19 1 1 C G 1 1_555 D C 7 1_555 -0.436 -0.484 0.191 0.800 -3.643 -5.920 8 C_G901:C972_D C 901 ? D 972 ? 19 1 1 C C 2 1_555 D G 6 1_555 -0.300 -0.204 -0.066 6.443 -8.850 -1.929 9 C_C902:G971_D C 902 ? D 971 ? 19 1 1 C A 3 1_555 D U 5 1_555 -0.056 -0.152 -0.109 -3.865 -20.877 6.311 10 C_A903:U970_D C 903 ? D 970 ? 20 1 1 C U 4 1_555 D A 4 1_555 -0.329 -0.258 -0.073 2.726 -14.917 -6.391 11 C_U904:A969_D C 904 ? D 969 ? 20 1 1 C C 5 1_555 D G 3 1_555 0.037 -0.191 0.046 3.054 -19.431 4.969 12 C_C905:G968_D C 905 ? D 968 ? 19 1 1 C C 6 1_555 D G 2 1_555 -0.173 -0.268 -0.150 2.001 -11.838 -2.122 13 C_C906:G967_D C 906 ? D 967 ? 19 1 1 C G 7 1_555 D C 1 1_555 1.053 0.002 0.163 1.362 -6.357 7.267 14 C_G907:C966_D C 907 ? D 966 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 7 1_555 A C 2 1_555 B G 6 1_555 0.251 -1.677 3.103 -0.278 2.195 32.236 -3.376 -0.497 2.983 3.948 0.499 32.310 1 AA_G901C902:G971C972_BB A 901 ? B 972 ? A 902 ? B 971 ? 1 A C 2 1_555 B G 6 1_555 A A 3 1_555 B U 5 1_555 -0.112 -1.451 3.435 -2.884 11.204 34.405 -3.883 -0.219 2.840 18.312 4.714 36.243 2 AA_C902A903:U970G971_BB A 902 ? B 971 ? A 903 ? B 970 ? 1 A A 3 1_555 B U 5 1_555 A U 4 1_555 B A 4 1_555 0.067 -1.567 3.187 1.022 3.401 24.062 -4.728 0.143 2.941 8.101 -2.434 24.318 3 AA_A903U904:A969U970_BB A 903 ? B 970 ? A 904 ? B 969 ? 1 A U 4 1_555 B A 4 1_555 A C 5 1_555 B G 3 1_555 0.044 -1.053 3.333 -0.896 1.783 35.371 -1.995 -0.206 3.276 2.932 1.473 35.425 4 AA_U904C905:G968A969_BB A 904 ? B 969 ? A 905 ? B 968 ? 1 A C 5 1_555 B G 3 1_555 A C 6 1_555 B G 2 1_555 0.311 -1.717 3.143 4.252 10.310 32.058 -4.420 0.074 2.507 18.002 -7.424 33.894 5 AA_C905C906:G967G968_BB A 905 ? B 968 ? A 906 ? B 967 ? 1 A C 6 1_555 B G 2 1_555 A G 7 1_555 B C 1 1_555 -0.253 -1.596 3.231 0.144 6.233 32.812 -3.754 0.464 2.886 10.911 -0.252 33.383 6 AA_C906G907:C966G967_BB A 906 ? B 967 ? A 907 ? B 966 ? 1 C G 1 1_555 D C 7 1_555 C C 2 1_555 D G 6 1_555 -0.161 -1.739 3.128 0.223 6.158 28.987 -4.574 0.358 2.707 12.130 -0.438 29.621 7 CC_G901C902:G971C972_DD C 901 ? D 972 ? C 902 ? D 971 ? 1 C C 2 1_555 D G 6 1_555 C A 3 1_555 D U 5 1_555 0.760 -1.305 3.532 2.807 8.578 35.705 -3.287 -0.805 3.193 13.721 -4.489 36.792 8 CC_C902A903:U970G971_DD C 902 ? D 971 ? C 903 ? D 970 ? 1 C A 3 1_555 D U 5 1_555 C U 4 1_555 D A 4 1_555 -0.883 -1.371 3.031 -1.838 6.272 27.899 -4.034 1.416 2.715 12.787 3.747 28.639 9 CC_A903U904:A969U970_DD C 903 ? D 970 ? C 904 ? D 969 ? 1 C U 4 1_555 D A 4 1_555 C C 5 1_555 D G 3 1_555 1.252 -1.033 3.217 1.843 5.346 36.205 -2.356 -1.747 3.096 8.538 -2.943 36.629 10 CC_U904C905:G968A969_DD C 904 ? D 969 ? C 905 ? D 968 ? 1 C C 5 1_555 D G 3 1_555 C C 6 1_555 D G 2 1_555 -0.707 -1.528 3.228 -0.812 9.109 29.407 -4.523 1.186 2.664 17.420 1.554 30.766 11 CC_C905C906:G967G968_DD C 905 ? D 968 ? C 906 ? D 967 ? 1 C C 6 1_555 D G 2 1_555 C G 7 1_555 D C 1 1_555 0.693 -1.135 3.301 -0.806 9.195 37.605 -2.807 -1.142 2.939 14.007 1.227 38.681 12 CC_C906G907:C966G967_DD C 906 ? D 967 ? C 907 ? D 966 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 GLYCEROL GOL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2VUQ _pdbx_initial_refinement_model.details 'PDB ENTRY 2VUQ' #