HEADER TRANSFERASE 19-JAN-09 2W8V TITLE SPT WITH PLP, N100W COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PALMITOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-420; COMPND 5 SYNONYM: SPT; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PAUCIMOBILIS; SOURCE 3 ORGANISM_TAXID: 13689; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.C.RAMAN,K.A.JOHNSON,D.J.CAMPOPIANO,J.H.NAISMITH REVDAT 4 18-NOV-15 2W8V 1 JRNL REMARK VERSN SEQRES REVDAT 4 2 HET HETNAM HETSYN FORMUL REVDAT 4 3 MODRES LINK SITE ATOM REVDAT 4 4 ANISOU TER HETATM CONECT REVDAT 4 5 MASTER REVDAT 3 23-JUN-09 2W8V 1 JRNL REVDAT 2 05-MAY-09 2W8V 1 JRNL REMARK REVDAT 1 27-JAN-09 2W8V 0 JRNL AUTH M.C.C.RAMAN,K.A.JOHNSON,B.A.YARD,J.LOWTHER,L.G.CARTER, JRNL AUTH 2 J.H.NAISMITH,D.J.CAMPOPIANO JRNL TITL THE EXTERNAL-ALDIMINE FORM OF SERINE PALMITOYLTRANSERASE; JRNL TITL 2 STRUCTURAL, KINETIC AND SPECTROSCOPIC ANALYSIS OF THE JRNL TITL 3 WILD-TYPE ENZYME AND HSAN1 MUTANT MIMICS. JRNL REF J.BIOL.CHEM. V. 284 17328 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19376777 JRNL DOI 10.1074/JBC.M109.008680 REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 62574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3305 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3809 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2430 REMARK 3 BIN FREE R VALUE SET COUNT : 195 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 399 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 6.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.16000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.277 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3109 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2095 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4213 ; 1.208 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5114 ; 0.825 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 409 ; 5.234 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;34.871 ;23.492 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 528 ;11.689 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;13.907 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 475 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3501 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 632 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1981 ; 0.683 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3171 ; 1.126 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1128 ; 1.799 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1036 ; 2.791 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5204 ; 0.773 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 399 ; 2.963 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5141 ; 1.016 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4070 -14.1980 -2.7350 REMARK 3 T TENSOR REMARK 3 T11: 0.2855 T22: 0.2126 REMARK 3 T33: 0.1696 T12: -0.0335 REMARK 3 T13: 0.0022 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.8695 L22: 0.2890 REMARK 3 L33: 1.2822 L12: 0.2033 REMARK 3 L13: -0.6561 L23: -0.5873 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: -0.0717 S13: -0.1553 REMARK 3 S21: 0.1687 S22: -0.0440 S23: 0.0018 REMARK 3 S31: -0.3356 S32: 0.0495 S33: 0.0297 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): -4.5350 -30.0960 -19.5120 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: 0.0471 REMARK 3 T33: 0.0985 T12: -0.0149 REMARK 3 T13: 0.0173 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.0637 L22: 0.4824 REMARK 3 L33: 1.2483 L12: -0.0784 REMARK 3 L13: -0.3223 L23: 0.1099 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: 0.0857 S13: -0.0463 REMARK 3 S21: -0.0622 S22: -0.0011 S23: -0.0617 REMARK 3 S31: -0.0139 S32: 0.0194 S33: 0.0143 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 252 REMARK 3 ORIGIN FOR THE GROUP (A): -16.8810 -6.5820 -18.2760 REMARK 3 T TENSOR REMARK 3 T11: 0.0418 T22: 0.0526 REMARK 3 T33: 0.0525 T12: 0.0185 REMARK 3 T13: -0.0207 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.4623 L22: 1.6397 REMARK 3 L33: 0.7725 L12: -0.1228 REMARK 3 L13: -0.1682 L23: -0.0524 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: -0.0102 S13: 0.0548 REMARK 3 S21: 0.0783 S22: -0.0115 S23: 0.0038 REMARK 3 S31: -0.1536 S32: -0.0633 S33: 0.0256 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 253 A 315 REMARK 3 RESIDUE RANGE : A 1265 A 1265 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0660 -18.6560 -25.9020 REMARK 3 T TENSOR REMARK 3 T11: 0.0136 T22: 0.0402 REMARK 3 T33: 0.0321 T12: 0.0028 REMARK 3 T13: -0.0048 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.9621 L22: 1.4193 REMARK 3 L33: 0.7285 L12: -0.1450 REMARK 3 L13: 0.1403 L23: -0.0435 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: 0.0462 S13: 0.0336 REMARK 3 S21: -0.0663 S22: -0.0033 S23: -0.0180 REMARK 3 S31: -0.0544 S32: -0.0741 S33: 0.0575 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 316 A 419 REMARK 3 ORIGIN FOR THE GROUP (A): -11.1230 -20.7650 4.5180 REMARK 3 T TENSOR REMARK 3 T11: 0.0497 T22: 0.0546 REMARK 3 T33: 0.0448 T12: -0.0138 REMARK 3 T13: 0.0150 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.7350 L22: 1.0848 REMARK 3 L33: 2.0319 L12: 0.0869 REMARK 3 L13: 0.5021 L23: 0.0329 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: -0.1339 S13: 0.0972 REMARK 3 S21: 0.1438 S22: -0.0408 S23: -0.0468 REMARK 3 S31: -0.1544 S32: -0.0215 S33: 0.0284 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES RESIDUAL ONLY. THE C-TERMINUS IS REMARK 3 DISORDERED, BUT OXT IS USED TO MODEL LAST ORDERED ATOM LINK REMARK 3 WITH 2W8J, 2W8T,2W8U NOTE ALTHOUGH N100W IS MUTATION, WE ONLY REMARK 3 CAN MODEL AN ALA REMARK 4 REMARK 4 2W8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JAN-09. REMARK 100 THE PDBE ID CODE IS EBI-38590. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62574 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.43 REMARK 200 RESOLUTION RANGE LOW (A) : 27.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.7 REMARK 200 R MERGE (I) : 0.04 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.3 REMARK 200 R MERGE FOR SHELL (I) : 0.39 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.0 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.88700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.88700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.96000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.89300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.96000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.89300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.88700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.96000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.89300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 45.88700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.96000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.89300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 8650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -45.88700 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 100 TO TRP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 HIS A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 ASP A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ASP A 17 REMARK 465 ILE A 18 REMARK 465 ALA A 19 REMARK 465 PRO A 20 REMARK 465 GLU A 21 REMARK 465 LEU A 421 REMARK 465 GLU A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 HIS A 427 REMARK 465 HIS A 428 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 100 CG CD1 CD2 NE1 CE2 CE3 CZ2 CZ3 REMARK 470 TRP A 100 CH2 REMARK 470 GLY A 420 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 43 -79.94 -109.21 REMARK 500 LYS A 265 -99.25 -111.05 REMARK 500 THR A 269 -143.98 -142.73 REMARK 500 PHE A 293 40.63 -99.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLP A1265 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W8J RELATED DB: PDB REMARK 900 SPT WITH PLP-SER REMARK 900 RELATED ID: 2W8T RELATED DB: PDB REMARK 900 SPT WITH PLP, N100C REMARK 900 RELATED ID: 2W8U RELATED DB: PDB REMARK 900 SPT WITH PLP, N100Y REMARK 900 RELATED ID: 2W8W RELATED DB: PDB REMARK 900 N100Y SPT WITH PLP-SER REMARK 999 REMARK 999 SEQUENCE REMARK 999 C-TER HIS TAG NOTE ENGINEERED MUTATION AT N100W NOTE THE REMARK 999 MUTATION IS N100W, HOWEVER, WE CAN ONLY SEE ALA DBREF 2W8V A 2 420 UNP Q93UV0 Q93UV0_PSEPA 2 420 DBREF 2W8V A 421 428 PDB 2W8V 2W8V 421 428 SEQADV 2W8V TRP A 100 UNP Q93UV0 ASN 100 ENGINEERED MUTATION SEQRES 1 A 427 THR GLU ALA ALA ALA GLN PRO HIS ALA LEU PRO ALA ASP SEQRES 2 A 427 ALA PRO ASP ILE ALA PRO GLU ARG ASP LEU LEU SER LYS SEQRES 3 A 427 PHE ASP GLY LEU ILE ALA GLU ARG GLN LYS LEU LEU ASP SEQRES 4 A 427 SER GLY VAL THR ASP PRO PHE ALA ILE VAL MET GLU GLN SEQRES 5 A 427 VAL LYS SER PRO THR GLU ALA VAL ILE ARG GLY LYS ASP SEQRES 6 A 427 THR ILE LEU LEU GLY THR TYR ASN TYR MET GLY MET THR SEQRES 7 A 427 PHE ASP PRO ASP VAL ILE ALA ALA GLY LYS GLU ALA LEU SEQRES 8 A 427 GLU LYS PHE GLY SER GLY THR TRP GLY SER ARG MET LEU SEQRES 9 A 427 ASN GLY THR PHE HIS ASP HIS MET GLU VAL GLU GLN ALA SEQRES 10 A 427 LEU ARG ASP PHE TYR GLY THR THR GLY ALA ILE VAL PHE SEQRES 11 A 427 SER THR GLY TYR MET ALA ASN LEU GLY ILE ILE SER THR SEQRES 12 A 427 LEU ALA GLY LYS GLY GLU TYR VAL ILE LEU ASP ALA ASP SEQRES 13 A 427 SER HIS ALA SER ILE TYR ASP GLY CYS GLN GLN GLY ASN SEQRES 14 A 427 ALA GLU ILE VAL ARG PHE ARG HIS ASN SER VAL GLU ASP SEQRES 15 A 427 LEU ASP LYS ARG LEU GLY ARG LEU PRO LYS GLU PRO ALA SEQRES 16 A 427 LYS LEU VAL VAL LEU GLU GLY VAL TYR SER MET LEU GLY SEQRES 17 A 427 ASP ILE ALA PRO LEU LYS GLU MET VAL ALA VAL ALA LYS SEQRES 18 A 427 LYS HIS GLY ALA MET VAL LEU VAL ASP GLU ALA HIS SER SEQRES 19 A 427 MET GLY PHE PHE GLY PRO ASN GLY ARG GLY VAL TYR GLU SEQRES 20 A 427 ALA GLN GLY LEU GLU GLY GLN ILE ASP PHE VAL VAL GLY SEQRES 21 A 427 THR PHE SER LYS SER VAL GLY THR VAL GLY GLY PHE VAL SEQRES 22 A 427 VAL SER ASN HIS PRO LYS PHE GLU ALA VAL ARG LEU ALA SEQRES 23 A 427 CYS ARG PRO TYR ILE PHE THR ALA SER LEU PRO PRO SER SEQRES 24 A 427 VAL VAL ALA THR ALA THR THR SER ILE ARG LYS LEU MET SEQRES 25 A 427 THR ALA HIS GLU LYS ARG GLU ARG LEU TRP SER ASN ALA SEQRES 26 A 427 ARG ALA LEU HIS GLY GLY LEU LYS ALA MET GLY PHE ARG SEQRES 27 A 427 LEU GLY THR GLU THR CYS ASP SER ALA ILE VAL ALA VAL SEQRES 28 A 427 MET LEU GLU ASP GLN GLU GLN ALA ALA MET MET TRP GLN SEQRES 29 A 427 ALA LEU LEU ASP GLY GLY LEU TYR VAL ASN MET ALA ARG SEQRES 30 A 427 PRO PRO ALA THR PRO ALA GLY THR PHE LEU LEU ARG CYS SEQRES 31 A 427 SER ILE CYS ALA GLU HIS THR PRO ALA GLN ILE GLN THR SEQRES 32 A 427 VAL LEU GLY MET PHE GLN ALA ALA GLY ARG ALA VAL GLY SEQRES 33 A 427 VAL ILE GLY LEU GLU HIS HIS HIS HIS HIS HIS HET PLP A1265 15 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETSYN PLP VITAMIN B6 PHOSPHATE FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 HOH *399(H2 O) HELIX 1 1 LEU A 25 LYS A 27 5 3 HELIX 2 2 PHE A 28 GLY A 42 1 15 HELIX 3 3 ASP A 45 ILE A 49 5 5 HELIX 4 4 ASP A 81 GLY A 96 1 16 HELIX 5 5 SER A 102 GLY A 107 1 6 HELIX 6 6 PHE A 109 GLY A 124 1 16 HELIX 7 7 THR A 133 ALA A 146 1 14 HELIX 8 8 HIS A 159 GLY A 169 1 11 HELIX 9 9 SER A 180 ARG A 190 1 11 HELIX 10 10 PRO A 213 HIS A 224 1 12 HELIX 11 11 GLY A 245 GLN A 250 1 6 HELIX 12 12 GLU A 282 CYS A 288 1 7 HELIX 13 13 CYS A 288 PHE A 293 1 6 HELIX 14 14 PRO A 298 MET A 313 1 16 HELIX 15 15 ALA A 315 GLY A 337 1 23 HELIX 16 16 ASP A 356 GLY A 371 1 16 HELIX 17 17 THR A 398 GLY A 417 1 20 SHEET 1 AA 4 GLN A 53 VAL A 54 0 SHEET 2 AA 4 GLU A 59 ILE A 62 -1 N VAL A 61 O GLN A 53 SHEET 3 AA 4 LYS A 65 LEU A 69 -1 O LYS A 65 N ILE A 62 SHEET 4 AA 4 LEU A 372 TYR A 373 1 N TYR A 373 O ILE A 68 SHEET 1 AB 7 GLY A 127 PHE A 131 0 SHEET 2 AB 7 GLY A 272 SER A 276 -1 O GLY A 272 N PHE A 131 SHEET 3 AB 7 PHE A 258 THR A 262 -1 O VAL A 259 N VAL A 275 SHEET 4 AB 7 MET A 227 ASP A 231 1 O VAL A 228 N PHE A 258 SHEET 5 AB 7 LYS A 197 GLU A 202 1 O LYS A 197 N MET A 227 SHEET 6 AB 7 TYR A 151 ASP A 155 1 O TYR A 151 N LEU A 198 SHEET 7 AB 7 GLU A 172 PHE A 176 1 O GLU A 172 N VAL A 152 SHEET 1 AC 2 VAL A 204 TYR A 205 0 SHEET 2 AC 2 ASP A 210 ILE A 211 -1 O ASP A 210 N TYR A 205 SHEET 1 AD 4 ARG A 339 LEU A 340 0 SHEET 2 AD 4 ILE A 349 LEU A 354 -1 O MET A 353 N ARG A 339 SHEET 3 AD 4 PHE A 387 SER A 392 -1 O PHE A 387 N LEU A 354 SHEET 4 AD 4 ASN A 375 ALA A 377 -1 O ASN A 375 N ARG A 390 LINK NZ LYS A 265 C4A PLP A1265 1555 1555 1.34 CISPEP 1 PRO A 379 PRO A 380 0 3.23 SITE 1 AC1 18 THR A 133 GLY A 134 TYR A 135 ASN A 138 SITE 2 AC1 18 HIS A 159 SER A 161 GLU A 202 ASP A 231 SITE 3 AC1 18 ALA A 233 HIS A 234 THR A 262 SER A 264 SITE 4 AC1 18 LYS A 265 GLY A 271 THR A 294 ALA A 295 SITE 5 AC1 18 HOH A2261 HOH A2262 CRYST1 71.920 109.786 91.774 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013904 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010896 0.00000