HEADER CELL CYCLE 27-JAN-09 2W9N TITLE CRYSTAL STRUCTURE OF LINEAR DI-UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIUBIQUITIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: TWO UBIQUITIN MOLECULES FUSED HEAD-TO-TAIL SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSET KEYWDS CELL CYCLE, K63, IKK, NEMO, LYS63, LINEAR, UBIQUITIN, SIGNALLING CELL KEYWDS 2 CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR D.KOMANDER,F.REYES-TURCU,K.D.WILKINSON,D.BARFORD REVDAT 4 13-DEC-23 2W9N 1 REMARK LINK REVDAT 3 13-JUL-11 2W9N 1 VERSN REVDAT 2 02-JUN-09 2W9N 1 JRNL REVDAT 1 28-APR-09 2W9N 0 JRNL AUTH D.KOMANDER,F.REYES-TURCU,J.D.LICCHESI,P.ODENWAELDER, JRNL AUTH 2 K.D.WILKINSON,D.BARFORD JRNL TITL MOLECULAR DISCRIMINATION OF STRUCTURALLY EQUIVALENT LYS JRNL TITL 2 63-LINKED AND LINEAR POLYUBIQUITIN CHAINS. JRNL REF EMBO REP. V. 10 466 2009 JRNL REFN ISSN 1469-221X JRNL PMID 19373254 JRNL DOI 10.1038/EMBOR.2009.55 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 9431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 478 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 630 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4810 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.7700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1185 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.307 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.581 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1198 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1613 ; 1.927 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 148 ; 7.510 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ;34.869 ;25.849 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 242 ;19.553 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;24.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 193 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 859 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 435 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 792 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 44 ; 0.183 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 53 ; 0.261 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.214 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 771 ; 0.895 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1211 ; 1.441 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 469 ; 2.518 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 402 ; 3.940 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 149 REMARK 3 ORIGIN FOR THE GROUP (A): 46.5825 74.9048 33.6201 REMARK 3 T TENSOR REMARK 3 T11: 0.1253 T22: 0.0273 REMARK 3 T33: 0.0686 T12: -0.0186 REMARK 3 T13: 0.0065 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 9.0846 L22: 2.0253 REMARK 3 L33: 0.6035 L12: 3.3463 REMARK 3 L13: -0.0458 L23: 0.1913 REMARK 3 S TENSOR REMARK 3 S11: 0.1961 S12: -0.3593 S13: -0.2625 REMARK 3 S21: 0.0820 S22: -0.0881 S23: -0.3045 REMARK 3 S31: -0.0076 S32: 0.0864 S33: -0.1080 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2W9N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1290038661. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9985 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 74.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 17.10 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1UBQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350 AND 200 MM ZNOAC, PH 7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 52.78600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.78600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.78600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.78600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.78600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.78600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 52.78600 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 52.78600 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 52.78600 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 52.78600 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 52.78600 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 52.78600 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 52.78600 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 52.78600 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 52.78600 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 52.78600 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 52.78600 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 52.78600 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 26.39300 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 79.17900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 79.17900 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 26.39300 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 26.39300 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 26.39300 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 79.17900 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 79.17900 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 26.39300 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 79.17900 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 26.39300 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 79.17900 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 26.39300 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 79.17900 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 79.17900 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 79.17900 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 26.39300 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 79.17900 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 26.39300 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 26.39300 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 26.39300 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 79.17900 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 79.17900 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 26.39300 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 26.39300 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 79.17900 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 79.17900 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 79.17900 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 79.17900 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 26.39300 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 79.17900 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 26.39300 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 79.17900 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 26.39300 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 26.39300 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 26.39300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 150 REMARK 465 GLY A 151 REMARK 465 GLY A 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 140 O HOH A 2023 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1150 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 18 OE2 REMARK 620 2 ASP A 21 OD1 93.0 REMARK 620 3 CL A1154 CL 121.6 145.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1151 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 94 OE1 REMARK 620 2 ASP A 97 OD1 101.8 REMARK 620 3 HOH A2026 O 80.0 74.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1152 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 140 OE2 REMARK 620 2 GLU A 140 OE1 57.8 REMARK 620 3 HIS A 144 NE2 77.3 124.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1150 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1151 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1152 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1153 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1154 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XQQ RELATED DB: PDB REMARK 900 SIMULTANEOUS DETERMINATION OF PROTEIN STRUCTURE AND DYNAMICS REMARK 900 RELATED ID: 2JF5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LYS63-LINKED DI- UBIQUITIN REMARK 900 RELATED ID: 2GBJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE 9-10 8 GLYCINE INSERTION MUTANT REMARK 900 OFUBIQUITIN. REMARK 900 RELATED ID: 1UBQ RELATED DB: PDB REMARK 900 UBIQUITIN REMARK 900 RELATED ID: 1ZGU RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE HUMAN MMS2- UBIQUITIN COMPLEX REMARK 900 RELATED ID: 2G45 RELATED DB: PDB REMARK 900 CO-CRYSTAL STRUCTURE OF ZNF UBP DOMAIN FROM THEDEUBIQUITINATING REMARK 900 ENZYME ISOPEPTIDASE T (ISOT) IN COMPLEXWITH UBIQUITIN REMARK 900 RELATED ID: 2GBK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE 9-10 MOAD INSERTION MUTANT OFUBIQUITIN REMARK 900 RELATED ID: 2J7Q RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE UBIQUITIN-SPECIFIC PROTEASE ENCODED BY REMARK 900 MURINE CYTOMEGALOVIRUS TEGUMENT PROTEIN M48 IN COMPLEX WITH A REMARK 900 UBQUITIN-BASED SUICIDE SUBSTRATE REMARK 900 RELATED ID: 1F9J RELATED DB: PDB REMARK 900 STRUCTURE OF A NEW CRYSTAL FORM OF TETRAUBIQUITIN REMARK 900 RELATED ID: 2BGF RELATED DB: PDB REMARK 900 NMR STRUCTURE OF LYS48-LINKED DI-UBIQUITIN USING CHEMICAL SHIFT REMARK 900 PERTURBATION DATA TOGETHER WITH RDCS AND 15N-RELAXATION DATA REMARK 900 RELATED ID: 1FXT RELATED DB: PDB REMARK 900 STRUCTURE OF A CONJUGATING ENZYME-UBIQUITIN THIOLESTERCOMPLEX REMARK 900 RELATED ID: 1TBE RELATED DB: PDB REMARK 900 TETRAUBIQUITIN REMARK 900 RELATED ID: 2AYO RELATED DB: PDB REMARK 900 STRUCTURE OF USP14 BOUND TO UBQUITIN ALDEHYDE REMARK 900 RELATED ID: 1XD3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF UCHL3-UBVME COMPLEX REMARK 900 RELATED ID: 1GJZ RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF A DIMERIC N-TERMINAL FRAGMENT OF HUMAN REMARK 900 UBIQUITIN REMARK 900 RELATED ID: 1UBI RELATED DB: PDB REMARK 900 UBIQUITIN REMARK 900 RELATED ID: 1G6J RELATED DB: PDB REMARK 900 STRUCTURE OF RECOMBINANT HUMAN UBIQUITIN IN AOT REVERSEMICELLES REMARK 900 RELATED ID: 1NBF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A UBP-FAMILY DEUBIQUITINATING ENZYMEIN REMARK 900 ISOLATION AND IN COMPLEX WITH UBIQUITIN ALDEHYDE REMARK 900 RELATED ID: 1SIF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A MULTIPLE HYDROPHOBIC CORE MUTANT OFUBIQUITIN REMARK 900 RELATED ID: 1D3Z RELATED DB: PDB REMARK 900 UBIQUITIN NMR STRUCTURE REMARK 900 RELATED ID: 1OGW RELATED DB: PDB REMARK 900 SYNTHETIC UBIQUITIN WITH FLUORO-LEU AT 50 AND 67 REMARK 900 RELATED ID: 2GBN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE 35-36 8 GLYCINE INSERTION MUTANTOF REMARK 900 UBIQUITIN REMARK 900 RELATED ID: 2GBM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE 35-36 8 GLYCINE INSERTION MUTANTOF REMARK 900 UBIQUITIN REMARK 900 RELATED ID: 1YX5 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF S5A UIM-1/UBIQUITIN COMPLEX REMARK 900 RELATED ID: 1C3T RELATED DB: PDB REMARK 900 ROTAMER STRAIN AS A DETERMINANT OF PROTEIN STRUCTURALSPECIFICITY REMARK 900 RELATED ID: 1Q5W RELATED DB: PDB REMARK 900 UBIQUITIN RECOGNITION BY NPL4 ZINC-FINGERS REMARK 900 RELATED ID: 1S1Q RELATED DB: PDB REMARK 900 TSG101(UEV) DOMAIN IN COMPLEX WITH UBIQUITIN REMARK 900 RELATED ID: 1YX6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF S5A UIM-2/UBIQUITIN COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 TWO COPIES OF ENTRY FUSED HEAD-TO-TAIL DBREF 2W9N A 1 76 UNP P62988 UBIQ_HUMAN 1 76 DBREF 2W9N A 77 152 UNP P62988 UBIQ_HUMAN 1 76 SEQRES 1 A 152 FME GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 152 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 152 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 152 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 152 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 152 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY MET GLN SEQRES 7 A 152 ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE THR LEU SEQRES 8 A 152 GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL LYS ALA SEQRES 9 A 152 LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN GLN SEQRES 10 A 152 ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP GLY ARG SEQRES 11 A 152 THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER THR LEU SEQRES 12 A 152 HIS LEU VAL LEU ARG LEU ARG GLY GLY MODRES 2W9N FME A 1 MET N-FORMYLMETHIONINE HET FME A 1 10 HET ZN A1150 1 HET ZN A1151 1 HET ZN A1152 1 HET ZN A1153 1 HET CL A1154 1 HETNAM FME N-FORMYLMETHIONINE HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION FORMUL 1 FME C6 H11 N O3 S FORMUL 2 ZN 4(ZN 2+) FORMUL 6 CL CL 1- FORMUL 7 HOH *26(H2 O) HELIX 1 1 THR A 22 GLY A 35 1 14 HELIX 2 2 PRO A 37 ASP A 39 5 3 HELIX 3 3 LEU A 56 ASN A 60 5 5 HELIX 4 4 THR A 98 GLY A 111 1 14 HELIX 5 5 PRO A 113 ASP A 115 5 3 SHEET 1 AA 5 THR A 12 LEU A 15 0 SHEET 2 AA 5 ILE A 3 LYS A 6 -1 O ILE A 3 N LEU A 15 SHEET 3 AA 5 THR A 66 LEU A 71 1 O LEU A 67 N LYS A 6 SHEET 4 AA 5 GLN A 41 PHE A 45 -1 O ARG A 42 N VAL A 70 SHEET 5 AA 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AB 5 THR A 88 GLU A 92 0 SHEET 2 AB 5 GLN A 78 LYS A 82 -1 O ILE A 79 N LEU A 91 SHEET 3 AB 5 THR A 142 LEU A 147 1 O LEU A 143 N LYS A 82 SHEET 4 AB 5 GLN A 117 PHE A 121 -1 O ARG A 118 N VAL A 146 SHEET 5 AB 5 LYS A 124 GLN A 125 -1 O LYS A 124 N PHE A 121 LINK C FME A 1 N GLN A 2 1555 1555 1.34 LINK OE2 GLU A 18 ZN ZN A1150 1555 1555 2.17 LINK OD1 ASP A 21 ZN ZN A1150 6566 1555 2.11 LINK OE1 GLU A 94 ZN ZN A1151 7564 1555 2.01 LINK OD1 ASP A 97 ZN ZN A1151 1555 1555 2.04 LINK OD2 ASP A 128 ZN ZN A1153 1555 1555 2.02 LINK OE2 GLU A 140 ZN ZN A1152 1555 1555 2.33 LINK OE1 GLU A 140 ZN ZN A1152 1555 1555 2.15 LINK NE2 HIS A 144 ZN ZN A1152 18554 1555 2.12 LINK ZN ZN A1150 CL CL A1154 1555 6566 2.30 LINK ZN ZN A1151 O HOH A2026 1555 1555 1.83 SITE 1 AC1 4 GLU A 18 ASP A 21 CL A1154 HOH A2003 SITE 1 AC2 5 GLU A 94 ASP A 97 LYS A 105 HOH A2025 SITE 2 AC2 5 HOH A2026 SITE 1 AC3 2 GLU A 140 HIS A 144 SITE 1 AC4 2 LYS A 103 ASP A 128 SITE 1 AC5 3 ASP A 21 ZN A1150 HOH A2002 CRYST1 105.572 105.572 105.572 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009472 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009472 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009472 0.00000 HETATM 1 N FME A 1 78.146 86.512 34.266 1.00 43.99 N HETATM 2 CN FME A 1 78.932 86.654 35.389 1.00 44.35 C HETATM 3 O1 FME A 1 79.538 85.690 35.821 1.00 45.80 O HETATM 4 CA FME A 1 76.791 86.995 34.598 1.00 43.21 C HETATM 5 CB FME A 1 76.125 87.713 33.410 1.00 43.24 C HETATM 6 CG FME A 1 74.799 88.368 33.825 1.00 42.48 C HETATM 7 SD FME A 1 74.049 89.221 32.480 1.00 41.21 S HETATM 8 CE FME A 1 72.358 89.223 32.037 1.00 39.44 C HETATM 9 C FME A 1 75.918 85.845 35.073 1.00 42.51 C HETATM 10 O FME A 1 75.884 84.787 34.430 1.00 42.58 O