HEADER OXIDOREDUCTASE 02-FEB-09 2WA3 TITLE FACTOR INHIBITING HIF-1 ALPHA WITH 2-(3-HYDROXYPHENYL)-2-OXOACETIC TITLE 2 ACID CAVEAT 2WA3 GLU A 307 C-ALPHA IS PLANAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FACTOR INHIBITING HIF1, HYPOXIA-INDUCIBLE FACTOR ASPARAGINE COMPND 5 HYDROXYLASE, FACTOR INHIBITING HIF-1, FIH-1; COMPND 6 EC: 1.14.11.16; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS HYDROXYLASE, DIOXYGENASE, TRANSCRIPTION, OXIDOREDUCTASE, KEYWDS 2 TRANSCRIPTION ACTIVATOR/INHIBITOR, HYPOXIA EXPDTA X-RAY DIFFRACTION AUTHOR A.CONEJO-GARCIA,B.M.R.LIENARD,I.J.CLIFTON,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 6 13-DEC-23 2WA3 1 REMARK LINK REVDAT 5 21-FEB-18 2WA3 1 AUTHOR JRNL REVDAT 4 05-JUL-17 2WA3 1 REMARK REVDAT 3 29-SEP-10 2WA3 1 JRNL REVDAT 2 22-SEP-10 2WA3 1 CAVEAT KEYWDS JRNL REMARK REVDAT 1 21-APR-10 2WA3 0 JRNL AUTH A.CONEJO-GARCIA,M.A.MCDONOUGH,C.LOENARZ,L.A.MCNEILL, JRNL AUTH 2 K.S.HEWITSON,W.GE,B.M.LIENARD,C.J.SCHOFIELD,I.J.CLIFTON JRNL TITL STRUCTURAL BASIS FOR BINDING OF CYCLIC 2-OXOGLUTARATE JRNL TITL 2 ANALOGUES TO FACTOR-INHIBITING HYPOXIA-INDUCIBLE FACTOR. JRNL REF BIOORG. MED. CHEM. LETT. V. 20 6125 2010 JRNL REFN ESSN 1464-3405 JRNL PMID 20822901 JRNL DOI 10.1016/J.BMCL.2010.08.032 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.ELKINS,K.S.HEWITSON,L.MCNEILL,J.SEIBEL,I.SCHLEMMINGER, REMARK 1 AUTH 2 C.PUGH,P.RATCLIFFE,C.J.SCHOFIELD REMARK 1 TITL STRUCTURE OF FACTOR-INHIBITING HYPOXIA-INDUCIBLE FACTOR REMARK 1 TITL 2 (HIF) REVEALS MECHANISM OF OXIDATIVE MODIFICATION OF REMARK 1 TITL 3 HIF-1ALPHA REMARK 1 REF J.BIOL.CHEM. V. 278 1802 2003 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 12446723 REMARK 1 DOI 10.1074/JBC.C200644200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1043 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1414 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4320 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.4170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2765 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.10000 REMARK 3 B22 (A**2) : 1.10000 REMARK 3 B33 (A**2) : -2.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.314 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.242 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.119 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2879 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1988 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3913 ; 1.872 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4816 ; 1.376 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 338 ; 7.987 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;38.609 ;24.557 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 475 ;18.478 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;21.983 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3232 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 598 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 630 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2026 ; 0.208 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1374 ; 0.196 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1503 ; 0.096 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 108 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.016 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.074 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 11 ; 0.330 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.133 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2140 ; 1.182 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 671 ; 0.187 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2724 ; 1.456 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1444 ; 2.355 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1187 ; 3.461 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): 8.5460 31.5680 15.5700 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: -0.1871 REMARK 3 T33: 0.6203 T12: -0.0038 REMARK 3 T13: -0.2374 T23: -0.0699 REMARK 3 L TENSOR REMARK 3 L11: 0.7211 L22: 1.7867 REMARK 3 L33: 3.3026 L12: 1.0131 REMARK 3 L13: 0.5975 L23: -0.1705 REMARK 3 S TENSOR REMARK 3 S11: -0.2245 S12: 0.1155 S13: 0.4093 REMARK 3 S21: -0.4946 S22: -0.0873 S23: 0.7395 REMARK 3 S31: 0.0922 S32: -0.2830 S33: 0.3117 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2090 20.8580 13.0030 REMARK 3 T TENSOR REMARK 3 T11: 0.1364 T22: -0.2255 REMARK 3 T33: 0.3408 T12: -0.0193 REMARK 3 T13: -0.1158 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 2.5865 L22: 3.2102 REMARK 3 L33: 4.0577 L12: 1.4074 REMARK 3 L13: 0.1612 L23: 0.8866 REMARK 3 S TENSOR REMARK 3 S11: -0.1956 S12: 0.4520 S13: -0.2063 REMARK 3 S21: -0.3359 S22: 0.3871 S23: 0.0522 REMARK 3 S31: 0.1600 S32: 0.0997 S33: -0.1915 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 14.6080 19.0460 38.5260 REMARK 3 T TENSOR REMARK 3 T11: 0.2067 T22: 0.1099 REMARK 3 T33: 0.2854 T12: -0.0498 REMARK 3 T13: 0.0372 T23: 0.0668 REMARK 3 L TENSOR REMARK 3 L11: 1.6176 L22: 0.7607 REMARK 3 L33: 3.5288 L12: 1.0397 REMARK 3 L13: 1.1410 L23: 0.2315 REMARK 3 S TENSOR REMARK 3 S11: 0.0322 S12: -0.3616 S13: -0.0375 REMARK 3 S21: 1.0624 S22: -0.1231 S23: 0.1846 REMARK 3 S31: 0.5967 S32: -0.3386 S33: 0.0910 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 24.0510 23.6000 23.3080 REMARK 3 T TENSOR REMARK 3 T11: 0.0954 T22: -0.1953 REMARK 3 T33: 0.3929 T12: -0.0347 REMARK 3 T13: -0.1153 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.5261 L22: 2.8133 REMARK 3 L33: 1.3712 L12: 0.2047 REMARK 3 L13: 0.1987 L23: 1.6810 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.1356 S13: -0.0329 REMARK 3 S21: 0.0672 S22: 0.1906 S23: -0.0973 REMARK 3 S31: 0.1601 S32: 0.0192 S33: -0.1915 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7010 43.3290 32.3680 REMARK 3 T TENSOR REMARK 3 T11: 0.0176 T22: -0.2171 REMARK 3 T33: 0.4143 T12: -0.0149 REMARK 3 T13: -0.0712 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 2.0146 L22: 4.5959 REMARK 3 L33: 4.1919 L12: -0.0187 REMARK 3 L13: 1.4547 L23: -0.5068 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: -0.1370 S13: 0.1224 REMARK 3 S21: -0.0489 S22: -0.0737 S23: 0.3753 REMARK 3 S31: -0.1840 S32: -0.0872 S33: 0.0306 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 262 A 349 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3400 35.3040 29.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.0313 T22: -0.1427 REMARK 3 T33: 0.3850 T12: 0.0117 REMARK 3 T13: -0.0705 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.6296 L22: 2.7128 REMARK 3 L33: 1.8086 L12: 1.7494 REMARK 3 L13: 1.5076 L23: 1.5943 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: -0.0393 S13: -0.0361 REMARK 3 S21: -0.1454 S22: 0.0521 S23: -0.0621 REMARK 3 S31: 0.2172 S32: 0.1983 S33: -0.0819 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ANISOTROPIC U FACTORS CALCULATED FROM TLS MODEL. ATOM REMARK 3 RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD REMARK 3 CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. REMARK 4 REMARK 4 2WA3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1290038014. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.4880 REMARK 200 MONOCHROMATOR : SI (1 1 1) REMARK 200 OPTICS : RH COATED MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20426 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 37.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.75000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1H2N REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 100MM HEPES PH REMARK 280 7.5, 3% PEG400, 1MM FESO4, 28MG/ML PROTEIN, 10MM SUBSTRATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.21000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.46900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.46900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.10500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.46900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.46900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 111.31500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.46900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.46900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 37.10500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.46900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.46900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.31500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.21000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 86.93800 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 86.93800 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 74.21000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 181 CD GLN A 181 OE1 0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 177 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 238 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 238 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 248 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 248 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 22 16.37 57.48 REMARK 500 LEU A 23 10.47 -65.42 REMARK 500 ASP A 66 36.23 -140.73 REMARK 500 ASN A 110 -89.45 -27.90 REMARK 500 ASN A 113 53.42 -55.49 REMARK 500 SER A 118 75.99 -171.26 REMARK 500 ARG A 138 35.78 -147.94 REMARK 500 ASN A 151 -115.98 -147.30 REMARK 500 ILE A 210 -53.29 -125.08 REMARK 500 ASP A 237 131.03 -39.02 REMARK 500 ARG A 238 -0.33 79.70 REMARK 500 TYR A 276 -3.61 74.55 REMARK 500 ARG A 305 83.61 -48.27 REMARK 500 ASN A 332 118.48 -160.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 2-(3-HYDROXYPHENYL)-2-OXOACETIC ACID (A29): PUBCHEM CID REMARK 600 13548097 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 350 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 199 NE2 REMARK 620 2 ASP A 201 OD2 117.0 REMARK 620 3 HIS A 279 NE2 84.9 77.0 REMARK 620 4 A29 A 400 O2 157.2 75.8 79.7 REMARK 620 5 A29 A 400 O7 84.2 157.7 99.4 81.9 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 350 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A29 A 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WA4 RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH N,3- DIHYDROXYBENZAMIDE REMARK 900 RELATED ID: 1MZE RELATED DB: PDB REMARK 900 HUMAN FACTOR INHIBITING HIF (FIH1) REMARK 900 RELATED ID: 2W0X RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH PYRIDINE 2,4 DICARBOXYLIC ACID REMARK 900 RELATED ID: 2CGN RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH SUCCINATE REMARK 900 RELATED ID: 1MZF RELATED DB: PDB REMARK 900 HUMAN FACTOR INHIBITING HIF (FIH1) IN COMPLEX WITH 2-OXOGLUTARATE REMARK 900 RELATED ID: 1H2N RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1YCI RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH N-(CARBOXYCARBONYL)-D- REMARK 900 PHENYLALANINE REMARK 900 RELATED ID: 2CGO RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA WITH FUMARATE REMARK 900 RELATED ID: 1H2K RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1IZ3 RELATED DB: PDB REMARK 900 DIMERIC STRUCTURE OF FIH (FACTOR INHIBITING HIF) REMARK 900 RELATED ID: 1H2L RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE REMARK 900 RELATED ID: 1H2M RELATED DB: PDB REMARK 900 FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT REMARK 900 PEPTIDE DBREF 2WA3 A 1 349 UNP Q9NWT6 HIF1N_HUMAN 1 349 SEQRES 1 A 349 MET ALA ALA THR ALA ALA GLU ALA VAL ALA SER GLY SER SEQRES 2 A 349 GLY GLU PRO ARG GLU GLU ALA GLY ALA LEU GLY PRO ALA SEQRES 3 A 349 TRP ASP GLU SER GLN LEU ARG SER TYR SER PHE PRO THR SEQRES 4 A 349 ARG PRO ILE PRO ARG LEU SER GLN SER ASP PRO ARG ALA SEQRES 5 A 349 GLU GLU LEU ILE GLU ASN GLU GLU PRO VAL VAL LEU THR SEQRES 6 A 349 ASP THR ASN LEU VAL TYR PRO ALA LEU LYS TRP ASP LEU SEQRES 7 A 349 GLU TYR LEU GLN GLU ASN ILE GLY ASN GLY ASP PHE SER SEQRES 8 A 349 VAL TYR SER ALA SER THR HIS LYS PHE LEU TYR TYR ASP SEQRES 9 A 349 GLU LYS LYS MET ALA ASN PHE GLN ASN PHE LYS PRO ARG SEQRES 10 A 349 SER ASN ARG GLU GLU MET LYS PHE HIS GLU PHE VAL GLU SEQRES 11 A 349 LYS LEU GLN ASP ILE GLN GLN ARG GLY GLY GLU GLU ARG SEQRES 12 A 349 LEU TYR LEU GLN GLN THR LEU ASN ASP THR VAL GLY ARG SEQRES 13 A 349 LYS ILE VAL MET ASP PHE LEU GLY PHE ASN TRP ASN TRP SEQRES 14 A 349 ILE ASN LYS GLN GLN GLY LYS ARG GLY TRP GLY GLN LEU SEQRES 15 A 349 THR SER ASN LEU LEU LEU ILE GLY MET GLU GLY ASN VAL SEQRES 16 A 349 THR PRO ALA HIS TYR ASP GLU GLN GLN ASN PHE PHE ALA SEQRES 17 A 349 GLN ILE LYS GLY TYR LYS ARG CYS ILE LEU PHE PRO PRO SEQRES 18 A 349 ASP GLN PHE GLU CYS LEU TYR PRO TYR PRO VAL HIS HIS SEQRES 19 A 349 PRO CYS ASP ARG GLN SER GLN VAL ASP PHE ASP ASN PRO SEQRES 20 A 349 ASP TYR GLU ARG PHE PRO ASN PHE GLN ASN VAL VAL GLY SEQRES 21 A 349 TYR GLU THR VAL VAL GLY PRO GLY ASP VAL LEU TYR ILE SEQRES 22 A 349 PRO MET TYR TRP TRP HIS HIS ILE GLU SER LEU LEU ASN SEQRES 23 A 349 GLY GLY ILE THR ILE THR VAL ASN PHE TRP TYR LYS GLY SEQRES 24 A 349 ALA PRO THR PRO LYS ARG ILE GLU TYR PRO LEU LYS ALA SEQRES 25 A 349 HIS GLN LYS VAL ALA ILE MET ARG ASN ILE GLU LYS MET SEQRES 26 A 349 LEU GLY GLU ALA LEU GLY ASN PRO GLN GLU VAL GLY PRO SEQRES 27 A 349 LEU LEU ASN THR MET ILE LYS GLY ARG TYR ASN HET FE2 A 350 1 HET A29 A 400 12 HETNAM FE2 FE (II) ION HETNAM A29 2-(3-HYDROXYPHENYL)-2-OXO-ETHANOIC ACID FORMUL 2 FE2 FE 2+ FORMUL 3 A29 C8 H6 O4 FORMUL 4 HOH *84(H2 O) HELIX 1 1 ASP A 28 LEU A 32 5 5 HELIX 2 2 ASP A 49 ASN A 58 1 10 HELIX 3 3 VAL A 70 TRP A 76 5 7 HELIX 4 4 ASP A 77 ILE A 85 1 9 HELIX 5 5 ASP A 104 ALA A 109 5 6 HELIX 6 6 LYS A 124 GLN A 137 1 14 HELIX 7 7 GLY A 155 GLY A 164 1 10 HELIX 8 8 ASN A 166 GLY A 178 1 13 HELIX 9 9 PRO A 220 ASP A 222 5 3 HELIX 10 10 GLN A 223 TYR A 228 1 6 HELIX 11 11 PHE A 252 VAL A 258 5 7 HELIX 12 12 LYS A 311 LEU A 330 1 20 HELIX 13 13 ASN A 332 GLN A 334 5 3 HELIX 14 14 GLU A 335 LYS A 345 1 11 SHEET 1 AA 5 THR A 39 PRO A 41 0 SHEET 2 AA 5 GLY A 260 VAL A 265 1 O GLY A 260 N ARG A 40 SHEET 3 AA 5 LYS A 214 PHE A 219 -1 O LYS A 214 N VAL A 265 SHEET 4 AA 5 TRP A 278 SER A 283 -1 O TRP A 278 N PHE A 219 SHEET 5 AA 5 VAL A 195 HIS A 199 -1 O THR A 196 N ILE A 281 SHEET 1 AB 9 ARG A 44 LEU A 45 0 SHEET 2 AB 9 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AB 9 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AB 9 GLN A 204 LYS A 211 -1 O ASN A 205 N ILE A 273 SHEET 5 AB 9 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210 SHEET 6 AB 9 LEU A 186 GLY A 190 -1 O LEU A 186 N ASN A 294 SHEET 7 AB 9 ARG A 143 THR A 149 -1 O LEU A 146 N ILE A 189 SHEET 8 AB 9 PHE A 90 ALA A 95 -1 O SER A 91 N GLN A 147 SHEET 9 AB 9 ARG A 120 MET A 123 -1 O GLU A 121 N VAL A 92 SHEET 1 AC 6 ARG A 44 LEU A 45 0 SHEET 2 AC 6 VAL A 62 LEU A 64 1 O VAL A 63 N LEU A 45 SHEET 3 AC 6 VAL A 270 ILE A 273 -1 O VAL A 270 N LEU A 64 SHEET 4 AC 6 GLN A 204 LYS A 211 -1 O ASN A 205 N ILE A 273 SHEET 5 AC 6 THR A 290 TYR A 297 -1 O ILE A 291 N ILE A 210 SHEET 6 AC 6 LEU A 182 SER A 184 -1 N THR A 183 O TRP A 296 LINK NE2 HIS A 199 FE FE2 A 350 1555 1555 2.32 LINK OD2 ASP A 201 FE FE2 A 350 1555 1555 2.12 LINK NE2 HIS A 279 FE FE2 A 350 1555 1555 2.30 LINK FE FE2 A 350 O2 A29 A 400 1555 1555 1.89 LINK FE FE2 A 350 O7 A29 A 400 1555 1555 2.26 CISPEP 1 TYR A 308 PRO A 309 0 7.03 SITE 1 AC1 4 HIS A 199 ASP A 201 HIS A 279 A29 A 400 SITE 1 AC2 12 TYR A 145 LEU A 188 THR A 196 HIS A 199 SITE 2 AC2 12 ASP A 201 ASN A 205 PHE A 207 HIS A 279 SITE 3 AC2 12 ILE A 281 ASN A 294 TRP A 296 FE2 A 350 CRYST1 86.938 86.938 148.420 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011502 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011502 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006738 0.00000