HEADER LYASE/DNA 20-FEB-09 2WB2 TITLE DROSOPHILA MELANOGASTER (6-4) PHOTOLYASE BOUND TO DOUBLE STRANDED DNA TITLE 2 CONTAINING A T(6-4)C PHOTOLESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOLYASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-520; COMPND 5 SYNONYM: DNA PHOTOLYASE, RE11660P; COMPND 6 EC: 4.1.99.3; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*AP*CP*AP*GP*CP*GP*GP*64PP*ZP*GP*CP*AP *GP*GP*T)-3'; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: 6-4 LINK BETWEEN T 8 AND C 8 (SEE REMARK 600); COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: 5'-D(*TP*AP*CP*CP*TP*GP*CP*GP*AP*CP*CP*GP*CP*TP*G)-3'; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_TAXID: 7227; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA-GAMI PLYSS (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: DERIVED FROM PDEST007; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630 KEYWDS LYASE-DNA COMPLEX, PHOTOLESION, DNA PHOTOLYASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.F.GLAS,S.SCHNEIDER,M.J.MAUL,U.HENNECKE,T.CARELL REVDAT 8 13-DEC-23 2WB2 1 REMARK SEQRES LINK REVDAT 7 16-OCT-19 2WB2 1 REMARK REVDAT 6 07-AUG-19 2WB2 1 REMARK REVDAT 5 29-MAY-19 2WB2 1 SOURCE REMARK LINK REVDAT 4 26-OCT-11 2WB2 1 COMPND SOURCE JRNL DBREF REVDAT 3 13-JUL-11 2WB2 1 VERSN REVDAT 2 15-SEP-09 2WB2 1 JRNL REVDAT 1 17-MAR-09 2WB2 0 JRNL AUTH A.F.GLAS,S.SCHNEIDER,M.J.MAUL,U.HENNECKE,T.CARELL JRNL TITL CRYSTAL STRUCTURE OF THE T(6-4)C LESION IN COMPLEX WITH A JRNL TITL 2 (6-4) DNA PHOTOLYASE AND REPAIR OF UV- INDUCED (6-4) AND JRNL TITL 3 DEWAR PHOTOLESIONS. JRNL REF CHEMISTRY V. 15 10387 2009 JRNL REFN ISSN 0947-6539 JRNL PMID 19722240 JRNL DOI 10.1002/CHEM.200901004 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.J.MAUL,T.R.M.BARENDS,A.F.GLAS,M.J.CRYLE,T.DOMRATCHEVA, REMARK 1 AUTH 2 S.SCHNEIDER,I.SCHLICHTING,T.CARELL REMARK 1 TITL CRYSTAL STRUCTURE AND MECHANISM OF A DNA (6-4) PHOTOLYASE. REMARK 1 REF ANGEW.CHEM.INT.ED.ENGL. V. 47 10076 2008 REMARK 1 REFN ISSN 1433-7851 REMARK 1 PMID 18956392 REMARK 1 DOI 10.1002/ANIE.200804268 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 774 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1067 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 62 REMARK 3 BIN FREE R VALUE : 0.4340 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4162 REMARK 3 NUCLEIC ACID ATOMS : 608 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.00000 REMARK 3 B22 (A**2) : -2.40000 REMARK 3 B33 (A**2) : -1.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.415 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.337 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.342 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5023 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3317 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6952 ; 1.491 ; 2.120 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8035 ; 0.879 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 507 ; 5.774 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 207 ;33.403 ;23.140 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 735 ;15.314 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;15.836 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 729 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5062 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 973 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2546 ; 0.412 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1008 ; 0.088 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4125 ; 0.806 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2477 ; 1.335 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2827 ; 2.191 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5049 17.8619 4.2747 REMARK 3 T TENSOR REMARK 3 T11: 0.4127 T22: 0.3380 REMARK 3 T33: 0.2686 T12: 0.0079 REMARK 3 T13: 0.0442 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.4565 L22: 2.5860 REMARK 3 L33: 1.7623 L12: 0.9146 REMARK 3 L13: 0.1471 L23: -0.0280 REMARK 3 S TENSOR REMARK 3 S11: -0.0825 S12: 0.2223 S13: 0.1351 REMARK 3 S21: -0.2618 S22: 0.0336 S23: 0.0071 REMARK 3 S31: -0.0716 S32: 0.0716 S33: 0.0489 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3678 16.5956 12.2401 REMARK 3 T TENSOR REMARK 3 T11: 0.3651 T22: 0.2325 REMARK 3 T33: 0.3326 T12: 0.0318 REMARK 3 T13: 0.0068 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.5327 L22: 1.1560 REMARK 3 L33: 0.8609 L12: 0.5952 REMARK 3 L13: -0.3586 L23: -0.9611 REMARK 3 S TENSOR REMARK 3 S11: -0.0244 S12: 0.0645 S13: 0.1345 REMARK 3 S21: -0.0583 S22: -0.0169 S23: 0.0674 REMARK 3 S31: -0.0256 S32: 0.0620 S33: 0.0413 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 91 A 104 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3523 26.8889 -3.3677 REMARK 3 T TENSOR REMARK 3 T11: 0.4155 T22: 0.3911 REMARK 3 T33: 0.3785 T12: -0.0061 REMARK 3 T13: -0.0014 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 4.6003 L22: 2.3110 REMARK 3 L33: 1.2551 L12: -0.9940 REMARK 3 L13: -0.8746 L23: -0.0972 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.0467 S13: 0.0587 REMARK 3 S21: -0.0103 S22: 0.0071 S23: -0.0289 REMARK 3 S31: -0.0374 S32: 0.0972 S33: -0.0133 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 105 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 11.2596 14.4349 -7.5215 REMARK 3 T TENSOR REMARK 3 T11: 0.5001 T22: 0.4133 REMARK 3 T33: 0.3302 T12: -0.0045 REMARK 3 T13: 0.0335 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.8378 L22: 4.0237 REMARK 3 L33: 0.6772 L12: 1.6810 REMARK 3 L13: 0.6045 L23: -0.4949 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: 0.0854 S13: 0.2055 REMARK 3 S21: -0.3594 S22: 0.0271 S23: 0.2237 REMARK 3 S31: 0.1499 S32: 0.1076 S33: -0.0433 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5833 -7.1784 -5.6853 REMARK 3 T TENSOR REMARK 3 T11: 0.3782 T22: 0.3645 REMARK 3 T33: 0.3439 T12: 0.0300 REMARK 3 T13: 0.0501 T23: -0.0295 REMARK 3 L TENSOR REMARK 3 L11: 0.4619 L22: 1.3123 REMARK 3 L33: 2.0354 L12: 0.0767 REMARK 3 L13: -0.1583 L23: -0.1274 REMARK 3 S TENSOR REMARK 3 S11: 0.0122 S12: 0.1827 S13: -0.0703 REMARK 3 S21: -0.1994 S22: -0.0296 S23: -0.2431 REMARK 3 S31: 0.1002 S32: 0.0530 S33: 0.0175 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 242 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1195 12.7772 15.0841 REMARK 3 T TENSOR REMARK 3 T11: 0.3331 T22: 0.3262 REMARK 3 T33: 0.3219 T12: 0.0300 REMARK 3 T13: -0.0048 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.2390 L22: 1.6639 REMARK 3 L33: 0.4494 L12: 0.4391 REMARK 3 L13: -0.1966 L23: -0.0584 REMARK 3 S TENSOR REMARK 3 S11: 0.0575 S12: 0.0272 S13: 0.1039 REMARK 3 S21: 0.0446 S22: -0.0741 S23: -0.0197 REMARK 3 S31: -0.0915 S32: 0.0232 S33: 0.0165 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 243 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 10.2848 -9.9780 12.7764 REMARK 3 T TENSOR REMARK 3 T11: 0.3249 T22: 0.2874 REMARK 3 T33: 0.2835 T12: 0.0314 REMARK 3 T13: -0.0075 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.6958 L22: 1.5497 REMARK 3 L33: 1.3679 L12: 0.1010 REMARK 3 L13: -0.4743 L23: 0.1856 REMARK 3 S TENSOR REMARK 3 S11: -0.0348 S12: -0.0404 S13: -0.1117 REMARK 3 S21: -0.1297 S22: 0.0284 S23: -0.1090 REMARK 3 S31: 0.1333 S32: 0.2161 S33: 0.0064 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 302 A 385 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4676 -6.1401 3.0418 REMARK 3 T TENSOR REMARK 3 T11: 0.3454 T22: 0.2880 REMARK 3 T33: 0.2922 T12: 0.0139 REMARK 3 T13: -0.0290 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 0.8028 L22: 0.5610 REMARK 3 L33: 1.0293 L12: 0.0841 REMARK 3 L13: -0.2297 L23: -0.2883 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.1666 S13: -0.0127 REMARK 3 S21: -0.1238 S22: 0.0209 S23: 0.0629 REMARK 3 S31: 0.0059 S32: -0.0745 S33: -0.0344 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 386 A 418 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5920 -4.9775 1.4349 REMARK 3 T TENSOR REMARK 3 T11: 0.3222 T22: 0.3515 REMARK 3 T33: 0.2909 T12: 0.0310 REMARK 3 T13: -0.0280 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.2798 L22: 2.2645 REMARK 3 L33: 2.5729 L12: 0.2941 REMARK 3 L13: -0.3830 L23: 0.8170 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: 0.2211 S13: 0.0418 REMARK 3 S21: -0.0491 S22: -0.0615 S23: -0.0405 REMARK 3 S31: -0.0852 S32: -0.1253 S33: 0.0378 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 419 A 457 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1184 -15.2130 19.1148 REMARK 3 T TENSOR REMARK 3 T11: 0.3137 T22: 0.2552 REMARK 3 T33: 0.3256 T12: 0.0017 REMARK 3 T13: 0.0060 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 1.1127 L22: 0.7299 REMARK 3 L33: 2.5753 L12: 0.5651 REMARK 3 L13: -0.2922 L23: -0.7165 REMARK 3 S TENSOR REMARK 3 S11: -0.0365 S12: 0.0551 S13: -0.0919 REMARK 3 S21: 0.1055 S22: -0.0227 S23: 0.1821 REMARK 3 S31: 0.2705 S32: -0.1353 S33: 0.0592 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 458 A 486 REMARK 3 ORIGIN FOR THE GROUP (A): -28.2157 -13.2704 18.9111 REMARK 3 T TENSOR REMARK 3 T11: 0.3399 T22: 0.3724 REMARK 3 T33: 0.4104 T12: -0.0151 REMARK 3 T13: 0.0025 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 1.1127 L22: 0.0364 REMARK 3 L33: 5.1376 L12: -0.0615 REMARK 3 L13: -1.5133 L23: -0.1045 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: 0.0035 S13: -0.0433 REMARK 3 S21: 0.0304 S22: 0.0491 S23: 0.0788 REMARK 3 S31: 0.1787 S32: -0.1235 S33: -0.0306 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 487 A 509 REMARK 3 ORIGIN FOR THE GROUP (A): -15.0830 -18.6472 -10.2159 REMARK 3 T TENSOR REMARK 3 T11: 0.3942 T22: 0.3806 REMARK 3 T33: 0.3914 T12: -0.0143 REMARK 3 T13: -0.0250 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.8218 L22: 1.4288 REMARK 3 L33: 4.8230 L12: 0.3796 REMARK 3 L13: -1.2077 L23: -1.3744 REMARK 3 S TENSOR REMARK 3 S11: -0.0616 S12: 0.1142 S13: -0.0766 REMARK 3 S21: -0.1419 S22: -0.0180 S23: -0.0862 REMARK 3 S31: 0.0422 S32: 0.0333 S33: 0.0796 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 4 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2916 -31.0778 -17.7192 REMARK 3 T TENSOR REMARK 3 T11: 0.4808 T22: 0.4986 REMARK 3 T33: 0.4613 T12: 0.0165 REMARK 3 T13: 0.0173 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 3.7946 L22: 3.9285 REMARK 3 L33: 1.8098 L12: 1.5748 REMARK 3 L13: -0.5855 L23: 0.1789 REMARK 3 S TENSOR REMARK 3 S11: 0.0598 S12: 0.2259 S13: -0.1824 REMARK 3 S21: -0.2719 S22: 0.1518 S23: 0.2635 REMARK 3 S31: 0.3223 S32: -0.3699 S33: -0.2116 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 5 C 10 REMARK 3 ORIGIN FOR THE GROUP (A): -0.0823 -26.3654 -1.4874 REMARK 3 T TENSOR REMARK 3 T11: 0.4812 T22: 0.3279 REMARK 3 T33: 0.3604 T12: 0.0196 REMARK 3 T13: 0.0032 T23: -0.0379 REMARK 3 L TENSOR REMARK 3 L11: 4.2585 L22: 0.6250 REMARK 3 L33: 2.1021 L12: 0.9169 REMARK 3 L13: 0.9531 L23: -0.6579 REMARK 3 S TENSOR REMARK 3 S11: -0.1128 S12: 0.3683 S13: -0.2334 REMARK 3 S21: -0.2101 S22: 0.1244 S23: -0.1201 REMARK 3 S31: 0.5248 S32: 0.1327 S33: -0.0116 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 11 C 15 REMARK 3 ORIGIN FOR THE GROUP (A): -11.4363 -32.9516 13.3730 REMARK 3 T TENSOR REMARK 3 T11: 0.5905 T22: 0.5501 REMARK 3 T33: 0.5145 T12: 0.1434 REMARK 3 T13: 0.0598 T23: 0.0752 REMARK 3 L TENSOR REMARK 3 L11: 5.6026 L22: 0.6786 REMARK 3 L33: 1.2577 L12: -1.8897 REMARK 3 L13: 2.5884 L23: -0.8417 REMARK 3 S TENSOR REMARK 3 S11: 0.0919 S12: -0.7621 S13: -0.9252 REMARK 3 S21: 0.0800 S22: 0.3186 S23: 0.4021 REMARK 3 S31: 0.1299 S32: -0.1911 S33: -0.4105 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 5 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9494 -33.4525 14.0949 REMARK 3 T TENSOR REMARK 3 T11: 0.4908 T22: 0.4975 REMARK 3 T33: 0.4610 T12: 0.0098 REMARK 3 T13: 0.0029 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 2.7913 L22: 2.1693 REMARK 3 L33: 4.1150 L12: 1.5101 REMARK 3 L13: 2.6574 L23: 0.6417 REMARK 3 S TENSOR REMARK 3 S11: 0.0798 S12: 0.2733 S13: -0.1669 REMARK 3 S21: -0.1809 S22: 0.1089 S23: -0.2126 REMARK 3 S31: -0.1372 S32: 0.3328 S33: -0.1887 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 6 D 9 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0846 -32.2375 -0.8255 REMARK 3 T TENSOR REMARK 3 T11: 0.4638 T22: 0.4468 REMARK 3 T33: 0.4789 T12: 0.0053 REMARK 3 T13: 0.0108 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.9866 L22: 1.2324 REMARK 3 L33: 8.4379 L12: -0.4664 REMARK 3 L13: 2.1754 L23: -1.2051 REMARK 3 S TENSOR REMARK 3 S11: 0.0699 S12: 0.3890 S13: 0.0470 REMARK 3 S21: -0.3887 S22: -0.0194 S23: 0.0527 REMARK 3 S31: -0.1121 S32: 0.0818 S33: -0.0505 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 10 D 15 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2209 -24.0761 -12.0191 REMARK 3 T TENSOR REMARK 3 T11: 0.4744 T22: 0.5423 REMARK 3 T33: 0.2857 T12: 0.0404 REMARK 3 T13: 0.0613 T23: -0.0759 REMARK 3 L TENSOR REMARK 3 L11: 0.1650 L22: 5.9617 REMARK 3 L33: 0.9642 L12: -0.5089 REMARK 3 L13: 0.3821 L23: -1.3488 REMARK 3 S TENSOR REMARK 3 S11: 0.1073 S12: 0.1470 S13: -0.0413 REMARK 3 S21: -0.1271 S22: 0.0081 S23: -0.1222 REMARK 3 S31: 0.2073 S32: 0.1714 S33: -0.1154 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES RESIDUAL ONLY REMARK 4 REMARK 4 2WB2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-FEB-09. REMARK 100 THE DEPOSITION ID IS D_1290038837. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.076 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15653 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 45.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3CVU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS MIXED WITH DNA IN A 1:1.1 REMARK 280 MOLAR RATIO WITH A FINAL CONCENTRATION OF 8.5MG/ML PROTEIN. 0.1M REMARK 280 HEPES PH 7, 15-20% POLYETHYLENGLYCOL 4000, HANGING-DROP VAPOUR REMARK 280 DIFFUSION, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.77500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.83500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.50000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.83500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.77500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.50000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 ALA A -21 REMARK 465 SER A -20 REMARK 465 TRP A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 PRO A -16 REMARK 465 GLN A -15 REMARK 465 PHE A -14 REMARK 465 GLU A -13 REMARK 465 LYS A -12 REMARK 465 GLY A -11 REMARK 465 ALA A -10 REMARK 465 SER A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 LEU A 0 REMARK 465 MET A 1 REMARK 465 GLU A 510 REMARK 465 GLU A 511 REMARK 465 SER A 512 REMARK 465 SER A 513 REMARK 465 PHE A 514 REMARK 465 GLU A 515 REMARK 465 GLU A 516 REMARK 465 LYS A 517 REMARK 465 SER A 518 REMARK 465 GLU A 519 REMARK 465 THR A 520 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA C 1 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 31 O ALA A 34 1.89 REMARK 500 OE1 GLU A 313 CG1 VAL A 323 2.11 REMARK 500 O PHE A 28 OD1 ASN A 32 2.13 REMARK 500 OD2 ASP A 351 OH TYR A 476 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND1 HIS A 478 O3' DG D 15 4445 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DA C 3 O3' DA C 3 C3' -0.040 REMARK 500 DC D 7 O3' DC D 7 C3' -0.040 REMARK 500 DG D 8 N9 DG D 8 C4 -0.056 REMARK 500 DA D 9 O3' DA D 9 C3' -0.075 REMARK 500 DC D 10 O3' DC D 10 C3' -0.045 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 42 C - N - CD ANGL. DEV. = -18.0 DEGREES REMARK 500 DC C 2 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 64P C 8 O3' - P - OP2 ANGL. DEV. = 7.0 DEGREES REMARK 500 DG C 13 O4' - C1' - N9 ANGL. DEV. = 7.4 DEGREES REMARK 500 DT C 15 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT D 1 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT D 1 C5 - C4 - O4 ANGL. DEV. = -4.4 DEGREES REMARK 500 DC D 4 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT D 5 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DG D 6 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG D 8 O3' - P - O5' ANGL. DEV. = -11.6 DEGREES REMARK 500 DG D 8 O3' - P - OP2 ANGL. DEV. = 6.7 DEGREES REMARK 500 DG D 8 C5' - C4' - O4' ANGL. DEV. = -11.7 DEGREES REMARK 500 DG D 8 O4' - C1' - N9 ANGL. DEV. = 10.2 DEGREES REMARK 500 DG D 8 C2 - N3 - C4 ANGL. DEV. = -3.6 DEGREES REMARK 500 DG D 8 N3 - C4 - C5 ANGL. DEV. = 6.1 DEGREES REMARK 500 DG D 8 N9 - C4 - C5 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG D 8 N3 - C4 - N9 ANGL. DEV. = -8.7 DEGREES REMARK 500 DG D 8 N3 - C2 - N2 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG D 8 C8 - N9 - C1' ANGL. DEV. = 12.5 DEGREES REMARK 500 DG D 8 C4 - N9 - C1' ANGL. DEV. = -12.4 DEGREES REMARK 500 DA D 9 O3' - P - O5' ANGL. DEV. = 13.8 DEGREES REMARK 500 DA D 9 O5' - P - OP1 ANGL. DEV. = -6.0 DEGREES REMARK 500 DA D 9 P - O5' - C5' ANGL. DEV. = -12.6 DEGREES REMARK 500 DA D 9 O4' - C1' - N9 ANGL. DEV. = 5.5 DEGREES REMARK 500 DA D 9 C3' - O3' - P ANGL. DEV. = -10.4 DEGREES REMARK 500 DC D 10 O5' - P - OP1 ANGL. DEV. = -8.2 DEGREES REMARK 500 DC D 10 O5' - C5' - C4' ANGL. DEV. = -6.6 DEGREES REMARK 500 DC D 10 O4' - C4' - C3' ANGL. DEV. = -2.9 DEGREES REMARK 500 DC D 10 N1 - C2 - O2 ANGL. DEV. = 4.0 DEGREES REMARK 500 DC D 10 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC D 10 N3 - C4 - N4 ANGL. DEV. = -5.4 DEGREES REMARK 500 DC D 10 C5 - C4 - N4 ANGL. DEV. = 5.4 DEGREES REMARK 500 DC D 11 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG D 15 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 80 -151.88 -122.06 REMARK 500 ARG A 101 62.80 60.11 REMARK 500 ASN A 151 32.02 -89.54 REMARK 500 ASN A 315 33.79 -89.07 REMARK 500 ASP A 379 -67.33 -141.70 REMARK 500 TRP A 381 35.47 72.73 REMARK 500 PHE A 415 -8.88 78.94 REMARK 500 HIS A 417 -5.98 -147.88 REMARK 500 CYS A 453 16.34 -148.51 REMARK 500 THR A 474 -64.12 -120.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 CHAIN C HETEROGENS 64P AND Z: REMARK 600 RESIDUES DT 8 AND DC 9 HAVE FORMED A PHOTOPRODUCT BY THE REMARK 600 COVALENT BONDING OF ATOM C6 OF 64P TO C4 OF Z. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1510 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CONSTRUCT CONTAINS RESIDUES 1-520 DBREF 2WB2 A 1 520 UNP Q8SXK5 Q8SXK5_DROME 1 520 DBREF 2WB2 C 1 15 PDB 2WB2 2WB2 1 15 DBREF 2WB2 D 1 15 PDB 2WB2 2WB2 1 15 SEQADV 2WB2 MET A -22 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 ALA A -21 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 SER A -20 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 TRP A -19 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 SER A -18 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 HIS A -17 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 PRO A -16 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 GLN A -15 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 PHE A -14 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 GLU A -13 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 LYS A -12 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 GLY A -11 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 ALA A -10 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 SER A -9 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 THR A -8 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 SER A -7 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 LEU A -6 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 TYR A -5 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 LYS A -4 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 LYS A -3 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 ALA A -2 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 GLY A -1 UNP Q8SXK5 EXPRESSION TAG SEQADV 2WB2 LEU A 0 UNP Q8SXK5 EXPRESSION TAG SEQRES 1 A 543 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 543 SER THR SER LEU TYR LYS LYS ALA GLY LEU MET ASP SER SEQRES 3 A 543 GLN ARG SER THR LEU VAL HIS TRP PHE ARG LYS GLY LEU SEQRES 4 A 543 ARG LEU HIS ASP ASN PRO ALA LEU SER HIS ILE PHE THR SEQRES 5 A 543 ALA ALA ASN ALA ALA PRO GLY ARG TYR PHE VAL ARG PRO SEQRES 6 A 543 ILE PHE ILE LEU ASP PRO GLY ILE LEU ASP TRP MET GLN SEQRES 7 A 543 VAL GLY ALA ASN ARG TRP ARG PHE LEU GLN GLN THR LEU SEQRES 8 A 543 GLU ASP LEU ASP ASN GLN LEU ARG LYS LEU ASN SER ARG SEQRES 9 A 543 LEU PHE VAL VAL ARG GLY LYS PRO ALA GLU VAL PHE PRO SEQRES 10 A 543 ARG ILE PHE LYS SER TRP ARG VAL GLU MET LEU THR PHE SEQRES 11 A 543 GLU THR ASP ILE GLU PRO TYR SER VAL THR ARG ASP ALA SEQRES 12 A 543 ALA VAL GLN LYS LEU ALA LYS ALA GLU GLY VAL ARG VAL SEQRES 13 A 543 GLU THR HIS CYS SER HIS THR ILE TYR ASN PRO GLU LEU SEQRES 14 A 543 VAL ILE ALA LYS ASN LEU GLY LYS ALA PRO ILE THR TYR SEQRES 15 A 543 GLN LYS PHE LEU GLY ILE VAL GLU GLN LEU LYS VAL PRO SEQRES 16 A 543 LYS VAL LEU GLY VAL PRO GLU LYS LEU LYS ASN MET PRO SEQRES 17 A 543 THR PRO PRO LYS ASP GLU VAL GLU GLN LYS ASP SER ALA SEQRES 18 A 543 ALA TYR ASP CYS PRO THR MET LYS GLN LEU VAL LYS ARG SEQRES 19 A 543 PRO GLU GLU LEU GLY PRO ASN LYS PHE PRO GLY GLY GLU SEQRES 20 A 543 THR GLU ALA LEU ARG ARG MET GLU GLU SER LEU LYS ASP SEQRES 21 A 543 GLU ILE TRP VAL ALA ARG PHE GLU LYS PRO ASN THR ALA SEQRES 22 A 543 PRO ASN SER LEU GLU PRO SER THR THR VAL LEU SER PRO SEQRES 23 A 543 TYR LEU LYS PHE GLY CYS LEU SER ALA ARG LEU PHE ASN SEQRES 24 A 543 GLN LYS LEU LYS GLU ILE ILE LYS ARG GLN PRO LYS HIS SEQRES 25 A 543 SER GLN PRO PRO VAL SER LEU ILE GLY GLN LEU MET TRP SEQRES 26 A 543 ARG GLU PHE TYR TYR THR VAL ALA ALA ALA GLU PRO ASN SEQRES 27 A 543 PHE ASP ARG MET LEU GLY ASN VAL TYR CYS MET GLN ILE SEQRES 28 A 543 PRO TRP GLN GLU HIS PRO ASP HIS LEU GLU ALA TRP THR SEQRES 29 A 543 HIS GLY ARG THR GLY TYR PRO PHE ILE ASP ALA ILE MET SEQRES 30 A 543 ARG GLN LEU ARG GLN GLU GLY TRP ILE HIS HIS LEU ALA SEQRES 31 A 543 ARG HIS ALA VAL ALA CYS PHE LEU THR ARG GLY ASP LEU SEQRES 32 A 543 TRP ILE SER TRP GLU GLU GLY GLN ARG VAL PHE GLU GLN SEQRES 33 A 543 LEU LEU LEU ASP GLN ASP TRP ALA LEU ASN ALA GLY ASN SEQRES 34 A 543 TRP MET TRP LEU SER ALA SER ALA PHE PHE HIS GLN TYR SEQRES 35 A 543 PHE ARG VAL TYR SER PRO VAL ALA PHE GLY LYS LYS THR SEQRES 36 A 543 ASP PRO GLN GLY HIS TYR ILE ARG LYS TYR VAL PRO GLU SEQRES 37 A 543 LEU SER LYS TYR PRO ALA GLY CYS ILE TYR GLU PRO TRP SEQRES 38 A 543 LYS ALA SER LEU VAL ASP GLN ARG ALA TYR GLY CYS VAL SEQRES 39 A 543 LEU GLY THR ASP TYR PRO HIS ARG ILE VAL LYS HIS GLU SEQRES 40 A 543 VAL VAL HIS LYS GLU ASN ILE LYS ARG MET GLY ALA ALA SEQRES 41 A 543 TYR LYS VAL ASN ARG GLU VAL ARG THR GLY LYS GLU GLU SEQRES 42 A 543 GLU SER SER PHE GLU GLU LYS SER GLU THR SEQRES 1 C 15 DA DC DA DG DC DG DG 64P Z DG DC DA DG SEQRES 2 C 15 DG DT SEQRES 1 D 15 DT DA DC DC DT DG DC DG DA DC DC DG DC SEQRES 2 D 15 DT DG MODRES 2WB2 Z C 9 DC HET 64P C 8 21 HET Z C 9 18 HET FAD A1510 53 HETNAM 64P 5-AMINOTHYMIDINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM Z 1-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO- HETNAM 2 Z PENTOFURANOSYL)PYRIMIDIN-2(1H)-ONE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETSYN Z 2'-DEOXYZEBULARINE-5'-MONOPHOSPHATE FORMUL 2 64P C10 H18 N3 O8 P FORMUL 2 Z C9 H13 N2 O7 P FORMUL 4 FAD C27 H33 N9 O15 P2 HELIX 1 1 ASN A 21 ALA A 34 1 14 HELIX 2 2 ASP A 47 TRP A 53 5 7 HELIX 3 3 GLY A 57 LYS A 77 1 21 HELIX 4 4 LYS A 88 ARG A 101 1 14 HELIX 5 5 GLU A 112 GLY A 130 1 19 HELIX 6 6 ASN A 143 ASN A 151 1 9 HELIX 7 7 THR A 158 GLU A 167 1 10 HELIX 8 8 ASP A 190 ASP A 196 1 7 HELIX 9 9 THR A 204 VAL A 209 1 6 HELIX 10 10 ARG A 211 LEU A 215 5 5 HELIX 11 11 GLY A 223 LEU A 235 1 13 HELIX 12 12 ASP A 237 PHE A 244 1 8 HELIX 13 13 GLU A 245 THR A 249 5 5 HELIX 14 14 LEU A 261 PHE A 267 1 7 HELIX 15 15 SER A 271 GLN A 286 1 16 HELIX 16 16 SER A 295 ALA A 312 1 18 HELIX 17 17 HIS A 333 HIS A 342 1 10 HELIX 18 18 TYR A 347 GLY A 361 1 15 HELIX 19 19 HIS A 364 ARG A 377 1 14 HELIX 20 20 SER A 383 LEU A 395 1 13 HELIX 21 21 ASP A 399 SER A 411 1 13 HELIX 22 22 VAL A 426 LYS A 431 1 6 HELIX 23 23 GLY A 436 VAL A 443 1 8 HELIX 24 24 PRO A 444 SER A 447 5 4 HELIX 25 25 GLU A 456 ALA A 460 5 5 HELIX 26 26 SER A 461 TYR A 468 1 8 HELIX 27 27 LYS A 482 GLU A 509 1 28 SHEET 1 AA 5 PHE A 83 ARG A 86 0 SHEET 2 AA 5 TYR A 38 LEU A 46 1 O PRO A 42 N PHE A 83 SHEET 3 AA 5 SER A 6 PHE A 12 1 O SER A 6 N PHE A 39 SHEET 4 AA 5 VAL A 102 GLU A 108 1 N GLU A 103 O THR A 7 SHEET 5 AA 5 ARG A 132 HIS A 136 1 O ARG A 132 N LEU A 105 LINK O3' DG C 7 P 64P C 8 1555 1555 1.63 LINK O3' 64P C 8 P Z C 9 1555 1555 1.58 LINK C6 64P C 8 C4 Z C 9 1555 1555 1.56 LINK O3' Z C 9 P DG C 10 1555 1555 1.56 CISPEP 1 PRO A 292 PRO A 293 0 3.12 SITE 1 AC1 20 PHE A 244 LYS A 246 THR A 258 THR A 259 SITE 2 AC1 20 VAL A 260 LEU A 261 SER A 262 LEU A 265 SITE 3 AC1 20 GLN A 299 ARG A 303 TYR A 306 TRP A 362 SITE 4 AC1 20 HIS A 365 ARG A 368 ASP A 397 ASP A 399 SITE 5 AC1 20 LEU A 402 ASN A 403 ASN A 406 64P C 8 CRYST1 87.550 89.000 91.670 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011422 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011236 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010909 0.00000