HEADER RNA BINDING PROTEIN 02-MAR-09 2WBM TITLE CRYSTAL STRUCTURE OF MTHSBDS, THE HOMOLOGUE OF THE SHWACHMAN-BODIAN- TITLE 2 DIAMOND SYNDROME PROTEIN IN THE EURIARCHAEON METHANOTHERMOBACTER TITLE 3 THERMAUTOTROPHICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME MATURATION PROTEIN SDO1 HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MTHSBDS; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 187420; SOURCE 4 STRAIN: DELTA H; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PYCL02 KEYWDS SHWACHMAN-BODIAN-DIAMOND SYNDROME PROTEIN, RIBOSOME BINDING, KEYWDS 2 CONFORMATIONAL FLEXIBILITY, RNA-BINDING PROTEIN, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.L.NG,M.N.ISUPOV,A.A.LEBEDEV,M.ORTIZ-LOMBARDIA,A.A.ANTSON REVDAT 5 13-DEC-23 2WBM 1 REMARK REVDAT 4 06-MAR-19 2WBM 1 REMARK REVDAT 3 07-MAR-18 2WBM 1 SOURCE REVDAT 2 13-JUL-11 2WBM 1 VERSN REVDAT 1 02-JUN-09 2WBM 0 JRNL AUTH C.L.NG,D.G.WATERMAN,E.V.KOONIN,A.D.WALTERS,J.P.CHONG, JRNL AUTH 2 M.N.ISUPOV,A.A.LEBEDEV,D.H.BUNKA,P.G.STOCKLEY, JRNL AUTH 3 M.ORTIZ-LOMBARDIA,A.A.ANTSON JRNL TITL CONFORMATIONAL FLEXIBILITY AND MOLECULAR INTERACTIONS OF AN JRNL TITL 2 ARCHAEAL HOMOLOGUE OF THE SHWACHMAN-BODIAN-DIAMOND SYNDROME JRNL TITL 3 PROTEIN. JRNL REF BMC STRUCT.BIOL. V. 9 32 2009 JRNL REFN ESSN 1472-6807 JRNL PMID 19454024 JRNL DOI 10.1186/1472-6807-9-32 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0074 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 71100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1457 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4498 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3655 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 411 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.36000 REMARK 3 B22 (A**2) : -1.34000 REMARK 3 B33 (A**2) : -1.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.094 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.288 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3885 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5266 ; 1.173 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 501 ; 5.294 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;36.083 ;24.309 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 742 ;12.928 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;15.175 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 594 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2912 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2369 ; 1.446 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3877 ; 2.310 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1516 ; 3.892 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1368 ; 6.313 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8142 14.5529 73.1414 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.0422 REMARK 3 T33: 0.0145 T12: -0.0407 REMARK 3 T13: 0.0201 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 3.2690 L22: 8.0060 REMARK 3 L33: 5.4079 L12: -1.0533 REMARK 3 L13: 1.0442 L23: -0.0532 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: 0.0689 S13: 0.1671 REMARK 3 S21: -0.2504 S22: 0.1014 S23: -0.1582 REMARK 3 S31: -0.5483 S32: 0.1879 S33: -0.0872 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 24.8143 30.7260 50.0415 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.1032 REMARK 3 T33: 0.0577 T12: 0.0347 REMARK 3 T13: -0.0134 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.7782 L22: 10.9286 REMARK 3 L33: 2.7823 L12: 1.2589 REMARK 3 L13: -0.7327 L23: -3.6615 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: 0.1087 S13: 0.0926 REMARK 3 S21: -0.5449 S22: 0.0583 S23: -0.0684 REMARK 3 S31: -0.0990 S32: -0.0424 S33: -0.0289 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6760 56.9850 57.4103 REMARK 3 T TENSOR REMARK 3 T11: 0.0308 T22: 0.0635 REMARK 3 T33: 0.0615 T12: -0.0143 REMARK 3 T13: -0.0248 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 3.6923 L22: 6.9230 REMARK 3 L33: 3.2390 L12: -0.7690 REMARK 3 L13: 0.1897 L23: 0.8830 REMARK 3 S TENSOR REMARK 3 S11: 0.1855 S12: 0.0325 S13: -0.0963 REMARK 3 S21: -0.3202 S22: -0.0736 S23: 0.3756 REMARK 3 S31: 0.1108 S32: -0.2511 S33: -0.1119 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 88 REMARK 3 ORIGIN FOR THE GROUP (A): 64.0536 -12.8334 67.8526 REMARK 3 T TENSOR REMARK 3 T11: 0.1791 T22: 0.3044 REMARK 3 T33: 0.5503 T12: 0.0527 REMARK 3 T13: 0.0226 T23: 0.0582 REMARK 3 L TENSOR REMARK 3 L11: 6.1374 L22: 5.5538 REMARK 3 L33: 13.6228 L12: -1.6074 REMARK 3 L13: 0.6853 L23: 1.3004 REMARK 3 S TENSOR REMARK 3 S11: 0.1376 S12: 0.0813 S13: -0.6743 REMARK 3 S21: 0.0921 S22: -0.1113 S23: 0.8993 REMARK 3 S31: 1.5407 S32: 0.3254 S33: -0.0263 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 89 B 162 REMARK 3 ORIGIN FOR THE GROUP (A): 47.4976 9.5621 52.1950 REMARK 3 T TENSOR REMARK 3 T11: 0.0402 T22: 0.1661 REMARK 3 T33: 0.0573 T12: -0.0035 REMARK 3 T13: -0.0165 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 6.6150 L22: 4.1677 REMARK 3 L33: 4.7324 L12: 0.3354 REMARK 3 L13: 3.1464 L23: 0.5060 REMARK 3 S TENSOR REMARK 3 S11: -0.1835 S12: -0.2441 S13: 0.2444 REMARK 3 S21: -0.0276 S22: 0.0379 S23: -0.4101 REMARK 3 S31: -0.3807 S32: 0.3168 S33: 0.1456 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 163 B 232 REMARK 3 ORIGIN FOR THE GROUP (A): 40.7324 1.5710 25.1482 REMARK 3 T TENSOR REMARK 3 T11: 0.0579 T22: 0.0645 REMARK 3 T33: 0.0496 T12: -0.0046 REMARK 3 T13: 0.0052 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.0195 L22: 1.2841 REMARK 3 L33: 6.2545 L12: -0.4664 REMARK 3 L13: -0.8429 L23: 1.6512 REMARK 3 S TENSOR REMARK 3 S11: -0.0421 S12: -0.0279 S13: 0.0376 REMARK 3 S21: -0.0793 S22: 0.0520 S23: -0.1912 REMARK 3 S31: 0.0629 S32: 0.2637 S33: -0.0099 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES ARE RESIDUAL ONLY. REMARK 4 REMARK 4 2WBM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1290038931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0081 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72559 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 27.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.59000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1P9Q REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 22.5 MG/ML IN 25 MM TRIS REMARK 280 (PH 7.5) AND 0.1 M NACL, WAS CRYSTALLIZED BY THE VAPOUR REMARK 280 DIFFUSION METHOD AGAINST A RESERVOIR COMPOSED OF 0.9 M LITHIUM REMARK 280 SULPHATE, 0.5 M AMMONIUM SULPHATE AND 0.1 M SODIUM CITRATE (PH REMARK 280 5.6), PH 6, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.41450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.41450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 ARG B 33 REMARK 465 GLU B 34 REMARK 465 ASP B 35 REMARK 465 SER B 36 REMARK 465 ASP B 37 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 70 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 225 56.98 -101.77 REMARK 500 ASN B 225 59.41 -103.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1233 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1236 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1238 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1236 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 1237 REMARK 999 REMARK 999 SEQUENCE REMARK 999 SEQUENCE INCLUDES AN N-TERMINAL FUSION TAG SEQUENCE. REMARK 999 THE R175M MUTATION WAS INTRODUCED DURING THE PCR REMARK 999 AMPLIFICATION OF THE GENE FROM THE GENOMIC DNA OF REMARK 999 M. THERMAUTOTROPHICUS. DBREF 2WBM A -19 0 PDB 2WBM 2WBM -19 0 DBREF 2WBM A 1 232 UNP O26781 SDO1_METTH 1 232 DBREF 2WBM B -19 0 PDB 2WBM 2WBM -19 0 DBREF 2WBM B 1 232 UNP O26781 SDO1_METTH 1 232 SEQADV 2WBM MET A 175 UNP O26781 ARG 175 CONFLICT SEQADV 2WBM MET B 175 UNP O26781 ARG 175 CONFLICT SEQRES 1 A 252 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 252 LEU VAL PRO ARG GLY SER HIS MET VAL SER LEU GLU ASP SEQRES 3 A 252 ALA VAL ILE ALA ARG LEU GLU SER HIS GLY GLU ARG PHE SEQRES 4 A 252 GLU VAL LEU VAL ASP PRO ASP LEU ALA ALA GLU PHE ARG SEQRES 5 A 252 ARG GLU ASP SER ASP VAL SER VAL GLU ASP VAL LEU ALA SEQRES 6 A 252 VAL GLN GLU VAL PHE ARG ASP ALA ARG LYS GLY ASP LYS SEQRES 7 A 252 ALA SER GLU GLU ALA MET ARG LYS VAL PHE GLU THR ALA SEQRES 8 A 252 ASP PRO LEU GLU VAL THR PRO VAL ILE LEU ARG ARG GLY SEQRES 9 A 252 THR ILE GLN LEU THR ALA GLU GLN ARG ARG GLN MET ILE SEQRES 10 A 252 GLU ASP LYS ARG LEU LYS ILE ILE ASN LYS ILE ALA ARG SEQRES 11 A 252 GLU ALA ILE ASN PRO GLN ASN GLY LEU PRO HIS PRO PRO SEQRES 12 A 252 LYS ARG ILE GLU LYS ALA MET GLU GLU ALA ARG VAL HIS SEQRES 13 A 252 VAL ASP PRO PHE LYS THR VAL ASP GLU GLN VAL ASN ILE SEQRES 14 A 252 VAL LEU LYS ALA ILE ARG THR LYS ILE PRO ILE LYS PHE SEQRES 15 A 252 GLU LYS VAL ARG VAL ALA ILE LYS ILE PRO GLY GLU MET SEQRES 16 A 252 ALA GLY SER ALA TYR GLY VAL ILE SER ASN PHE GLY LYS SEQRES 17 A 252 ILE THR ASN GLU GLU TRP GLN ASN ASP GLY SER TRP ILE SEQRES 18 A 252 ALA VAL VAL GLU ILE PRO GLY GLY LEU GLN ASP SER PHE SEQRES 19 A 252 TYR GLN LYS LEU SER GLU LEU THR GLY GLY ASN VAL GLU SEQRES 20 A 252 THR ARG LEU ILE LYS SEQRES 1 B 252 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 252 LEU VAL PRO ARG GLY SER HIS MET VAL SER LEU GLU ASP SEQRES 3 B 252 ALA VAL ILE ALA ARG LEU GLU SER HIS GLY GLU ARG PHE SEQRES 4 B 252 GLU VAL LEU VAL ASP PRO ASP LEU ALA ALA GLU PHE ARG SEQRES 5 B 252 ARG GLU ASP SER ASP VAL SER VAL GLU ASP VAL LEU ALA SEQRES 6 B 252 VAL GLN GLU VAL PHE ARG ASP ALA ARG LYS GLY ASP LYS SEQRES 7 B 252 ALA SER GLU GLU ALA MET ARG LYS VAL PHE GLU THR ALA SEQRES 8 B 252 ASP PRO LEU GLU VAL THR PRO VAL ILE LEU ARG ARG GLY SEQRES 9 B 252 THR ILE GLN LEU THR ALA GLU GLN ARG ARG GLN MET ILE SEQRES 10 B 252 GLU ASP LYS ARG LEU LYS ILE ILE ASN LYS ILE ALA ARG SEQRES 11 B 252 GLU ALA ILE ASN PRO GLN ASN GLY LEU PRO HIS PRO PRO SEQRES 12 B 252 LYS ARG ILE GLU LYS ALA MET GLU GLU ALA ARG VAL HIS SEQRES 13 B 252 VAL ASP PRO PHE LYS THR VAL ASP GLU GLN VAL ASN ILE SEQRES 14 B 252 VAL LEU LYS ALA ILE ARG THR LYS ILE PRO ILE LYS PHE SEQRES 15 B 252 GLU LYS VAL ARG VAL ALA ILE LYS ILE PRO GLY GLU MET SEQRES 16 B 252 ALA GLY SER ALA TYR GLY VAL ILE SER ASN PHE GLY LYS SEQRES 17 B 252 ILE THR ASN GLU GLU TRP GLN ASN ASP GLY SER TRP ILE SEQRES 18 B 252 ALA VAL VAL GLU ILE PRO GLY GLY LEU GLN ASP SER PHE SEQRES 19 B 252 TYR GLN LYS LEU SER GLU LEU THR GLY GLY ASN VAL GLU SEQRES 20 B 252 THR ARG LEU ILE LYS HET GOL A1233 6 HET GOL A1234 6 HET GOL A1235 6 HET GOL A1236 6 HET GOL B1233 6 HET GOL B1234 6 HET SO4 B1235 5 HET SO4 B1236 5 HET CL B1237 1 HET SO4 B1238 5 HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 SO4 3(O4 S 2-) FORMUL 11 CL CL 1- FORMUL 13 HOH *411(H2 O) HELIX 1 1 ASP A 24 ARG A 33 1 10 HELIX 2 2 SER A 39 LEU A 44 1 6 HELIX 3 3 SER A 60 GLU A 69 1 10 HELIX 4 4 ASP A 72 GLY A 84 1 13 HELIX 5 5 THR A 89 GLU A 111 1 23 HELIX 6 6 PRO A 122 ALA A 133 1 12 HELIX 7 7 THR A 142 ARG A 155 1 14 HELIX 8 8 PRO A 172 GLU A 174 5 3 HELIX 9 9 MET A 175 GLY A 187 1 13 HELIX 10 10 LEU A 210 THR A 222 1 13 HELIX 11 11 ASP B 24 ARG B 32 1 9 HELIX 12 12 SER B 39 LEU B 44 1 6 HELIX 13 13 SER B 60 GLU B 69 1 10 HELIX 14 14 ASP B 72 GLY B 84 1 13 HELIX 15 15 THR B 89 GLU B 111 1 23 HELIX 16 16 PRO B 122 ALA B 133 1 12 HELIX 17 17 THR B 142 ARG B 155 1 14 HELIX 18 18 PRO B 172 GLU B 174 5 3 HELIX 19 19 MET B 175 GLY B 187 1 13 HELIX 20 20 LEU B 210 GLY B 223 1 14 SHEET 1 AA 3 GLU A 17 VAL A 23 0 SHEET 2 AA 3 VAL A 8 SER A 14 -1 O VAL A 8 N VAL A 23 SHEET 3 AA 3 THR A 85 GLN A 87 -1 O THR A 85 N ARG A 11 SHEET 1 AB 2 PHE A 50 ASP A 52 0 SHEET 2 AB 2 ASP A 57 LYS A 58 -1 O ASP A 57 N ARG A 51 SHEET 1 AC 2 ALA A 112 ILE A 113 0 SHEET 2 AC 2 LYS A 161 PHE A 162 -1 O LYS A 161 N ILE A 113 SHEET 1 AD 4 LYS A 188 TRP A 194 0 SHEET 2 AD 4 TRP A 200 PRO A 207 -1 O ILE A 201 N GLU A 193 SHEET 3 AD 4 LYS A 164 ILE A 171 -1 O VAL A 165 N ILE A 206 SHEET 4 AD 4 GLU A 227 LEU A 230 -1 O GLU A 227 N LYS A 170 SHEET 1 BA 3 GLU B 17 VAL B 23 0 SHEET 2 BA 3 VAL B 8 SER B 14 -1 O VAL B 8 N VAL B 23 SHEET 3 BA 3 THR B 85 GLN B 87 -1 O THR B 85 N ARG B 11 SHEET 1 BB 2 PHE B 50 ASP B 52 0 SHEET 2 BB 2 ASP B 57 LYS B 58 -1 O ASP B 57 N ARG B 51 SHEET 1 BC 2 ALA B 112 ILE B 113 0 SHEET 2 BC 2 LYS B 161 PHE B 162 -1 O LYS B 161 N ILE B 113 SHEET 1 BD 4 LYS B 188 TRP B 194 0 SHEET 2 BD 4 TRP B 200 PRO B 207 -1 O ILE B 201 N GLU B 193 SHEET 3 BD 4 LYS B 164 ILE B 171 -1 O VAL B 165 N ILE B 206 SHEET 4 BD 4 GLU B 227 ARG B 229 -1 O GLU B 227 N LYS B 170 SITE 1 AC1 7 ALA B 168 LEU B 230 LYS B 232 HOH B2172 SITE 2 AC1 7 HOH B2173 HOH B2174 HOH B2175 SITE 1 AC2 6 VAL A 167 GLN A 211 PHE A 214 THR A 228 SITE 2 AC2 6 ARG A 229 HOH A2213 SITE 1 AC3 5 LYS B 164 GLY B 187 LYS B 188 GLU B 205 SITE 2 AC3 5 PRO B 207 SITE 1 AC4 1 HOH A2227 SITE 1 AC5 5 ALA A 53 GLU A 192 HOH A2073 HOH A2201 SITE 2 AC5 5 HOH A2203 SITE 1 AC6 4 ALA A 176 GLY A 177 TRP A 194 HOH A2203 SITE 1 AC7 7 ARG A 65 HOH A2082 GLN B 195 ARG B 229 SITE 2 AC7 7 HOH B2181 HOH B2182 HOH B2183 SITE 1 AC8 5 LYS B 103 ASN B 106 ARG B 110 HOH B2176 SITE 2 AC8 5 HOH B2177 SITE 1 AC9 4 ARG B 11 GLN B 87 HOH B2178 HOH B2179 SITE 1 BC1 2 ILE B 160 LYS B 161 CRYST1 68.300 72.108 146.829 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006811 0.00000