data_2WBS # _entry.id 2WBS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2WBS PDBE EBI-38944 WWPDB D_1290038944 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2WBU _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE IN COMPLEX WITH DNA' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2WBS _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2009-03-03 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zocher, G.' 1 'Schuetz, A.' 2 'Carstanjen, D.' 3 'Heinemann, U.' 4 # _citation.id primary _citation.title 'The Structure of the Klf4 DNA-Binding Domain Links to Self-Renewal and Macrophage Differentiation.' _citation.journal_abbrev 'Cell.Mol.Life Sci.' _citation.journal_volume 68 _citation.page_first 3121 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM ? _citation.country SZ _citation.journal_id_ISSN 1420-682X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21290164 _citation.pdbx_database_id_DOI 10.1007/S00018-010-0618-X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Schuetz, A.' 1 primary 'Nana, D.' 2 primary 'Rose, C.' 3 primary 'Zocher, G.' 4 primary 'Milanovic, M.' 5 primary 'Koenigsmann, J.' 6 primary 'Blasig, R.' 7 primary 'Heinemann, U.' 8 primary 'Carstanjen, D.' 9 # _cell.entry_id 2WBS _cell.length_a 41.000 _cell.length_b 45.970 _cell.length_c 73.910 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WBS _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'KRUEPPEL-LIKE FACTOR 4' 10557.985 1 ? ? 'DNA-BINDING DOMAIN, RESIDUES 395-483' ? 2 polymer syn "5'-D(*GP*AP*GP*GP*CP*GP*CP)-3'" 2163.436 1 ? ? ? ? 3 polymer syn "5'-D(*GP*CP*GP*CP*CP*TP*CP)-3'" 2074.374 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 6 water nat water 18.015 131 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'GUT-ENRICHED KRUEPPEL-LIKE FACTOR, EPITHELIAL ZINC FINGER PROTEIN EZF' 2 'HEPTAMERIC DNA BINDING SEQUENCE OF KLF4' 3 'HEPTAMERIC DNA BINDING SEQUENCE OF KLF4' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDH LALHMKRHF ; ;KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDH LALHMKRHF ; A ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DG)(DG)(DC)(DG)(DC)' GAGGCGC F ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DG)(DC)(DC)(DT)(DC)' GCGCCTC G ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 ARG n 1 3 THR n 1 4 ALA n 1 5 THR n 1 6 HIS n 1 7 THR n 1 8 CYS n 1 9 ASP n 1 10 TYR n 1 11 ALA n 1 12 GLY n 1 13 CYS n 1 14 GLY n 1 15 LYS n 1 16 THR n 1 17 TYR n 1 18 THR n 1 19 LYS n 1 20 SER n 1 21 SER n 1 22 HIS n 1 23 LEU n 1 24 LYS n 1 25 ALA n 1 26 HIS n 1 27 LEU n 1 28 ARG n 1 29 THR n 1 30 HIS n 1 31 THR n 1 32 GLY n 1 33 GLU n 1 34 LYS n 1 35 PRO n 1 36 TYR n 1 37 HIS n 1 38 CYS n 1 39 ASP n 1 40 TRP n 1 41 ASP n 1 42 GLY n 1 43 CYS n 1 44 GLY n 1 45 TRP n 1 46 LYS n 1 47 PHE n 1 48 ALA n 1 49 ARG n 1 50 SER n 1 51 ASP n 1 52 GLU n 1 53 LEU n 1 54 THR n 1 55 ARG n 1 56 HIS n 1 57 TYR n 1 58 ARG n 1 59 LYS n 1 60 HIS n 1 61 THR n 1 62 GLY n 1 63 HIS n 1 64 ARG n 1 65 PRO n 1 66 PHE n 1 67 GLN n 1 68 CYS n 1 69 GLN n 1 70 LYS n 1 71 CYS n 1 72 ASP n 1 73 ARG n 1 74 ALA n 1 75 PHE n 1 76 SER n 1 77 ARG n 1 78 SER n 1 79 ASP n 1 80 HIS n 1 81 LEU n 1 82 ALA n 1 83 LEU n 1 84 HIS n 1 85 MET n 1 86 LYS n 1 87 ARG n 1 88 HIS n 1 89 PHE n 2 1 DG n 2 2 DA n 2 3 DG n 2 4 DG n 2 5 DC n 2 6 DG n 2 7 DC n 3 1 DG n 3 2 DC n 3 3 DG n 3 4 DC n 3 5 DC n 3 6 DT n 3 7 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name MOUSE _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain C57BL/6 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'MUS MUSCULUS' 'HOUSE MOUSE' 10090 ? 3 1 sample ? ? 'MUS MUSCULUS' MOUSE 10090 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP KLF4_MOUSE 1 ? ? Q60793 ? 2 PDB 2WBS 2 ? ? 2WBS ? 3 PDB 2WBS 3 ? ? 2WBS ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2WBS A 1 ? 89 ? Q60793 395 ? 483 ? 395 483 2 2 2WBS F 1 ? 7 ? 2WBS 1 ? 7 ? 1 7 3 3 2WBS G 1 ? 7 ? 2WBS 1 ? 7 ? 1 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2WBS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.32 _exptl_crystal.density_percent_sol 47 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2008-08-18 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI111 CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91841 1.0 2 2.0 1.0 3 1.28204 1.0 4 1.28312 1.0 5 1.16967 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.91841, 2.0, 1.28204, 1.28312, 1.16967' # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2WBS _reflns.observed_criterion_sigma_I 2.7 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 29.00 _reflns.d_resolution_high 1.70 _reflns.number_obs 15421 _reflns.number_all ? _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.20 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.75 _reflns_shell.percent_possible_all 98.6 _reflns_shell.Rmerge_I_obs 0.68 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.70 _reflns_shell.pdbx_redundancy 4.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2WBS _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 14649 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.00 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 97.5 _refine.ls_R_factor_obs 0.202 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.200 _refine.ls_R_factor_R_free 0.232 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 770 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.960 _refine.correlation_coeff_Fo_to_Fc_free 0.936 _refine.B_iso_mean 17.21 _refine.aniso_B[1][1] -0.84000 _refine.aniso_B[2][2] 0.18000 _refine.aniso_B[3][3] 0.66000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] -0.00000 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.118 _refine.pdbx_overall_ESU_R_Free 0.113 _refine.overall_SU_ML 0.090 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.489 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 716 _refine_hist.pdbx_number_atoms_nucleic_acid 281 _refine_hist.pdbx_number_atoms_ligand 9 _refine_hist.number_atoms_solvent 131 _refine_hist.number_atoms_total 1137 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 25.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.021 ? 1072 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 665 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.644 2.243 ? 1502 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.969 3.000 ? 1603 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.681 5.000 ? 90 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.536 20.976 ? 41 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 13.116 15.000 ? 123 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 19.510 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.084 0.200 ? 151 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 1003 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 214 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.758 6.000 ? 437 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.580 7.000 ? 697 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.516 7.500 ? 635 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 4.578 7.000 ? 803 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.70 _refine_ls_shell.d_res_low 1.75 _refine_ls_shell.number_reflns_R_work 1026 _refine_ls_shell.R_factor_R_work 0.2850 _refine_ls_shell.percent_reflns_obs 98.18 _refine_ls_shell.R_factor_R_free 0.3200 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 54 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2WBS _struct.title 'Crystal structure of the zinc finger domain of Klf4 bound to its target DNA' _struct.pdbx_descriptor 'KRUEPPEL-LIKE FACTOR 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2WBS _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text ;TRANSCRIPTION-DNA COMPLEX, DNA-BINDING, TRANSCRIPTION, METAL-BINDING, DNA, PROTEIN, NUCLEUS, ACTIVATOR, ZINC-FINGER, TRANSCRIPTION REGULATION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 6 ? I N N 6 ? J N N 6 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 19 ? ARG A 28 ? LYS A 413 ARG A 422 1 ? 10 HELX_P HELX_P2 2 ARG A 49 ? GLY A 62 ? ARG A 443 GLY A 456 1 ? 14 HELX_P HELX_P3 3 ARG A 77 ? MET A 85 ? ARG A 471 MET A 479 1 ? 9 HELX_P HELX_P4 4 LYS A 86 ? PHE A 89 ? LYS A 480 PHE A 483 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 43 SG ? ? A ZN 1484 A CYS 437 1_555 ? ? ? ? ? ? ? 2.314 ? metalc2 metalc ? ? D ZN . ZN ? ? ? 1_555 A CYS 38 SG ? ? A ZN 1484 A CYS 432 1_555 ? ? ? ? ? ? ? 2.205 ? metalc3 metalc ? ? D ZN . ZN ? ? ? 1_555 A HIS 56 NE2 ? ? A ZN 1484 A HIS 450 1_555 ? ? ? ? ? ? ? 2.120 ? metalc4 metalc ? ? D ZN . ZN ? ? ? 1_555 A HIS 60 NE2 ? ? A ZN 1484 A HIS 454 1_555 ? ? ? ? ? ? ? 1.966 ? metalc5 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 71 SG ? ? A ZN 1485 A CYS 465 1_555 ? ? ? ? ? ? ? 2.331 ? metalc6 metalc ? ? E ZN . ZN ? ? ? 1_555 A HIS 84 NE2 ? ? A ZN 1485 A HIS 478 1_555 ? ? ? ? ? ? ? 2.032 ? metalc7 metalc ? ? E ZN . ZN ? ? ? 1_555 A HIS 88 NE2 ? ? A ZN 1485 A HIS 482 1_555 ? ? ? ? ? ? ? 2.103 ? metalc8 metalc ? ? E ZN . ZN ? ? ? 1_555 A CYS 68 SG ? ? A ZN 1485 A CYS 462 1_555 ? ? ? ? ? ? ? 2.244 ? metalc9 metalc ? ? F ZN . ZN ? ? ? 1_555 A HIS 26 NE2 ? ? A ZN 1486 A HIS 420 1_555 ? ? ? ? ? ? ? 2.001 ? metalc10 metalc ? ? F ZN . ZN ? ? ? 1_555 A HIS 30 NE2 ? ? A ZN 1486 A HIS 424 1_555 ? ? ? ? ? ? ? 1.932 ? metalc11 metalc ? ? F ZN . ZN ? ? ? 1_555 A CYS 8 SG ? ? A ZN 1486 A CYS 402 1_555 ? ? ? ? ? ? ? 2.204 ? metalc12 metalc ? ? F ZN . ZN ? ? ? 1_555 A CYS 13 SG ? ? A ZN 1486 A CYS 407 1_555 ? ? ? ? ? ? ? 2.286 ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 7 N3 ? ? F DG 1 G DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 7 O2 ? ? F DG 1 G DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 7 N4 ? ? F DG 1 G DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 6 N3 ? ? F DA 2 G DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 6 O4 ? ? F DA 2 G DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 5 N3 ? ? F DG 3 G DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 5 O2 ? ? F DG 3 G DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 5 N4 ? ? F DG 3 G DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 4 N3 ? ? F DG 4 G DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 4 O2 ? ? F DG 4 G DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 4 N4 ? ? F DG 4 G DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 3 N1 ? ? F DC 5 G DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 3 O6 ? ? F DC 5 G DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 3 N2 ? ? F DC 5 G DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 2 N3 ? ? F DG 6 G DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 2 O2 ? ? F DG 6 G DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 2 N4 ? ? F DG 6 G DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 1 N1 ? ? F DC 7 G DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 1 O6 ? ? F DC 7 G DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 1 N2 ? ? F DC 7 G DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 HIS A 6 ? THR A 7 ? HIS A 400 THR A 401 AA 2 THR A 16 ? TYR A 17 ? THR A 410 TYR A 411 AB 1 TYR A 36 ? HIS A 37 ? TYR A 430 HIS A 431 AB 2 LYS A 46 ? PHE A 47 ? LYS A 440 PHE A 441 AC 1 PHE A 66 ? GLN A 67 ? PHE A 460 GLN A 461 AC 2 ALA A 74 ? PHE A 75 ? ALA A 468 PHE A 469 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N HIS A 6 ? N HIS A 400 O TYR A 17 ? O TYR A 411 AB 1 2 N TYR A 36 ? N TYR A 430 O PHE A 47 ? O PHE A 441 AC 1 2 N PHE A 66 ? N PHE A 460 O PHE A 75 ? O PHE A 469 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 1484' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 1485' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 1486' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 1487' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 38 ? CYS A 432 . ? 1_555 ? 2 AC1 4 CYS A 43 ? CYS A 437 . ? 1_555 ? 3 AC1 4 HIS A 56 ? HIS A 450 . ? 1_555 ? 4 AC1 4 HIS A 60 ? HIS A 454 . ? 1_555 ? 5 AC2 4 CYS A 68 ? CYS A 462 . ? 1_555 ? 6 AC2 4 CYS A 71 ? CYS A 465 . ? 1_555 ? 7 AC2 4 HIS A 84 ? HIS A 478 . ? 1_555 ? 8 AC2 4 HIS A 88 ? HIS A 482 . ? 1_555 ? 9 AC3 4 CYS A 8 ? CYS A 402 . ? 1_555 ? 10 AC3 4 CYS A 13 ? CYS A 407 . ? 1_555 ? 11 AC3 4 HIS A 26 ? HIS A 420 . ? 1_555 ? 12 AC3 4 HIS A 30 ? HIS A 424 . ? 1_555 ? 13 AC4 4 TRP A 40 ? TRP A 434 . ? 1_555 ? 14 AC4 4 ASP A 41 ? ASP A 435 . ? 1_555 ? 15 AC4 4 LYS A 70 ? LYS A 464 . ? 1_455 ? 16 AC4 4 HOH H . ? HOH A 2079 . ? 1_555 ? # _database_PDB_matrix.entry_id 2WBS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2WBS _atom_sites.fract_transf_matrix[1][1] 0.024390 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021753 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013530 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 395 ? ? ? A . n A 1 2 ARG 2 396 ? ? ? A . n A 1 3 THR 3 397 397 THR THR A . n A 1 4 ALA 4 398 398 ALA ALA A . n A 1 5 THR 5 399 399 THR THR A . n A 1 6 HIS 6 400 400 HIS HIS A . n A 1 7 THR 7 401 401 THR THR A . n A 1 8 CYS 8 402 402 CYS CYS A . n A 1 9 ASP 9 403 403 ASP ASP A . n A 1 10 TYR 10 404 404 TYR TYR A . n A 1 11 ALA 11 405 405 ALA ALA A . n A 1 12 GLY 12 406 406 GLY GLY A . n A 1 13 CYS 13 407 407 CYS CYS A . n A 1 14 GLY 14 408 408 GLY GLY A . n A 1 15 LYS 15 409 409 LYS LYS A . n A 1 16 THR 16 410 410 THR THR A . n A 1 17 TYR 17 411 411 TYR TYR A . n A 1 18 THR 18 412 412 THR THR A . n A 1 19 LYS 19 413 413 LYS LYS A . n A 1 20 SER 20 414 414 SER SER A . n A 1 21 SER 21 415 415 SER SER A . n A 1 22 HIS 22 416 416 HIS HIS A . n A 1 23 LEU 23 417 417 LEU LEU A . n A 1 24 LYS 24 418 418 LYS LYS A . n A 1 25 ALA 25 419 419 ALA ALA A . n A 1 26 HIS 26 420 420 HIS HIS A . n A 1 27 LEU 27 421 421 LEU LEU A . n A 1 28 ARG 28 422 422 ARG ARG A . n A 1 29 THR 29 423 423 THR THR A . n A 1 30 HIS 30 424 424 HIS HIS A . n A 1 31 THR 31 425 425 THR THR A . n A 1 32 GLY 32 426 426 GLY GLY A . n A 1 33 GLU 33 427 427 GLU GLU A . n A 1 34 LYS 34 428 428 LYS LYS A . n A 1 35 PRO 35 429 429 PRO PRO A . n A 1 36 TYR 36 430 430 TYR TYR A . n A 1 37 HIS 37 431 431 HIS HIS A . n A 1 38 CYS 38 432 432 CYS CYS A . n A 1 39 ASP 39 433 433 ASP ASP A . n A 1 40 TRP 40 434 434 TRP TRP A . n A 1 41 ASP 41 435 435 ASP ASP A . n A 1 42 GLY 42 436 436 GLY GLY A . n A 1 43 CYS 43 437 437 CYS CYS A . n A 1 44 GLY 44 438 438 GLY GLY A . n A 1 45 TRP 45 439 439 TRP TRP A . n A 1 46 LYS 46 440 440 LYS LYS A . n A 1 47 PHE 47 441 441 PHE PHE A . n A 1 48 ALA 48 442 442 ALA ALA A . n A 1 49 ARG 49 443 443 ARG ARG A . n A 1 50 SER 50 444 444 SER SER A . n A 1 51 ASP 51 445 445 ASP ASP A . n A 1 52 GLU 52 446 446 GLU GLU A . n A 1 53 LEU 53 447 447 LEU LEU A . n A 1 54 THR 54 448 448 THR THR A . n A 1 55 ARG 55 449 449 ARG ARG A . n A 1 56 HIS 56 450 450 HIS HIS A . n A 1 57 TYR 57 451 451 TYR TYR A . n A 1 58 ARG 58 452 452 ARG ARG A . n A 1 59 LYS 59 453 453 LYS LYS A . n A 1 60 HIS 60 454 454 HIS HIS A . n A 1 61 THR 61 455 455 THR THR A . n A 1 62 GLY 62 456 456 GLY GLY A . n A 1 63 HIS 63 457 457 HIS HIS A . n A 1 64 ARG 64 458 458 ARG ARG A . n A 1 65 PRO 65 459 459 PRO PRO A . n A 1 66 PHE 66 460 460 PHE PHE A . n A 1 67 GLN 67 461 461 GLN GLN A . n A 1 68 CYS 68 462 462 CYS CYS A . n A 1 69 GLN 69 463 463 GLN GLN A . n A 1 70 LYS 70 464 464 LYS LYS A . n A 1 71 CYS 71 465 465 CYS CYS A . n A 1 72 ASP 72 466 466 ASP ASP A . n A 1 73 ARG 73 467 467 ARG ARG A . n A 1 74 ALA 74 468 468 ALA ALA A . n A 1 75 PHE 75 469 469 PHE PHE A . n A 1 76 SER 76 470 470 SER SER A . n A 1 77 ARG 77 471 471 ARG ARG A . n A 1 78 SER 78 472 472 SER SER A . n A 1 79 ASP 79 473 473 ASP ASP A . n A 1 80 HIS 80 474 474 HIS HIS A . n A 1 81 LEU 81 475 475 LEU LEU A . n A 1 82 ALA 82 476 476 ALA ALA A . n A 1 83 LEU 83 477 477 LEU LEU A . n A 1 84 HIS 84 478 478 HIS HIS A . n A 1 85 MET 85 479 479 MET MET A . n A 1 86 LYS 86 480 480 LYS LYS A . n A 1 87 ARG 87 481 481 ARG ARG A . n A 1 88 HIS 88 482 482 HIS HIS A . n A 1 89 PHE 89 483 483 PHE PHE A . n B 2 1 DG 1 1 1 DG DG F . n B 2 2 DA 2 2 2 DA DA F . n B 2 3 DG 3 3 3 DG DG F . n B 2 4 DG 4 4 4 DG DG F . n B 2 5 DC 5 5 5 DC DC F . n B 2 6 DG 6 6 6 DG DG F . n B 2 7 DC 7 7 7 DC DC F . n C 3 1 DG 1 1 1 DG DG G . n C 3 2 DC 2 2 2 DC DC G . n C 3 3 DG 3 3 3 DG DG G . n C 3 4 DC 4 4 4 DC DC G . n C 3 5 DC 5 5 5 DC DC G . n C 3 6 DT 6 6 6 DT DT G . n C 3 7 DC 7 7 7 DC DC G . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 1484 1484 ZN ZN A . E 4 ZN 1 1485 1485 ZN ZN A . F 4 ZN 1 1486 1486 ZN ZN A . G 5 GOL 1 1487 1487 GOL GOL A . H 6 HOH 1 2001 2001 HOH HOH A . H 6 HOH 2 2002 2002 HOH HOH A . H 6 HOH 3 2003 2003 HOH HOH A . H 6 HOH 4 2004 2004 HOH HOH A . H 6 HOH 5 2005 2005 HOH HOH A . H 6 HOH 6 2006 2006 HOH HOH A . H 6 HOH 7 2007 2007 HOH HOH A . H 6 HOH 8 2008 2008 HOH HOH A . H 6 HOH 9 2009 2009 HOH HOH A . H 6 HOH 10 2010 2010 HOH HOH A . H 6 HOH 11 2011 2011 HOH HOH A . H 6 HOH 12 2012 2012 HOH HOH A . H 6 HOH 13 2013 2013 HOH HOH A . H 6 HOH 14 2014 2014 HOH HOH A . H 6 HOH 15 2015 2015 HOH HOH A . H 6 HOH 16 2016 2016 HOH HOH A . H 6 HOH 17 2017 2017 HOH HOH A . H 6 HOH 18 2018 2018 HOH HOH A . H 6 HOH 19 2019 2019 HOH HOH A . H 6 HOH 20 2020 2020 HOH HOH A . H 6 HOH 21 2021 2021 HOH HOH A . H 6 HOH 22 2022 2022 HOH HOH A . H 6 HOH 23 2023 2023 HOH HOH A . H 6 HOH 24 2024 2024 HOH HOH A . H 6 HOH 25 2025 2025 HOH HOH A . H 6 HOH 26 2026 2026 HOH HOH A . H 6 HOH 27 2027 2027 HOH HOH A . H 6 HOH 28 2028 2028 HOH HOH A . H 6 HOH 29 2029 2029 HOH HOH A . H 6 HOH 30 2030 2030 HOH HOH A . H 6 HOH 31 2031 2031 HOH HOH A . H 6 HOH 32 2032 2032 HOH HOH A . H 6 HOH 33 2033 2033 HOH HOH A . H 6 HOH 34 2034 2034 HOH HOH A . H 6 HOH 35 2035 2035 HOH HOH A . H 6 HOH 36 2036 2036 HOH HOH A . H 6 HOH 37 2037 2037 HOH HOH A . H 6 HOH 38 2038 2038 HOH HOH A . H 6 HOH 39 2039 2039 HOH HOH A . H 6 HOH 40 2040 2040 HOH HOH A . H 6 HOH 41 2041 2041 HOH HOH A . H 6 HOH 42 2042 2042 HOH HOH A . H 6 HOH 43 2043 2043 HOH HOH A . H 6 HOH 44 2044 2044 HOH HOH A . H 6 HOH 45 2045 2045 HOH HOH A . H 6 HOH 46 2046 2046 HOH HOH A . H 6 HOH 47 2047 2047 HOH HOH A . H 6 HOH 48 2048 2048 HOH HOH A . H 6 HOH 49 2049 2049 HOH HOH A . H 6 HOH 50 2050 2050 HOH HOH A . H 6 HOH 51 2051 2051 HOH HOH A . H 6 HOH 52 2052 2052 HOH HOH A . H 6 HOH 53 2053 2053 HOH HOH A . H 6 HOH 54 2054 2054 HOH HOH A . H 6 HOH 55 2055 2055 HOH HOH A . H 6 HOH 56 2056 2056 HOH HOH A . H 6 HOH 57 2057 2057 HOH HOH A . H 6 HOH 58 2058 2058 HOH HOH A . H 6 HOH 59 2059 2059 HOH HOH A . H 6 HOH 60 2060 2060 HOH HOH A . H 6 HOH 61 2061 2061 HOH HOH A . H 6 HOH 62 2062 2062 HOH HOH A . H 6 HOH 63 2063 2063 HOH HOH A . H 6 HOH 64 2064 2064 HOH HOH A . H 6 HOH 65 2065 2065 HOH HOH A . H 6 HOH 66 2066 2066 HOH HOH A . H 6 HOH 67 2067 2067 HOH HOH A . H 6 HOH 68 2068 2068 HOH HOH A . H 6 HOH 69 2069 2069 HOH HOH A . H 6 HOH 70 2070 2070 HOH HOH A . H 6 HOH 71 2071 2071 HOH HOH A . H 6 HOH 72 2072 2072 HOH HOH A . H 6 HOH 73 2073 2073 HOH HOH A . H 6 HOH 74 2074 2074 HOH HOH A . H 6 HOH 75 2075 2075 HOH HOH A . H 6 HOH 76 2076 2076 HOH HOH A . H 6 HOH 77 2077 2077 HOH HOH A . H 6 HOH 78 2078 2078 HOH HOH A . H 6 HOH 79 2079 2079 HOH HOH A . I 6 HOH 1 2001 2001 HOH HOH F . I 6 HOH 2 2002 2002 HOH HOH F . I 6 HOH 3 2003 2003 HOH HOH F . I 6 HOH 4 2004 2004 HOH HOH F . I 6 HOH 5 2005 2005 HOH HOH F . I 6 HOH 6 2006 2006 HOH HOH F . I 6 HOH 7 2007 2007 HOH HOH F . I 6 HOH 8 2008 2008 HOH HOH F . I 6 HOH 9 2009 2009 HOH HOH F . I 6 HOH 10 2010 2010 HOH HOH F . I 6 HOH 11 2011 2011 HOH HOH F . I 6 HOH 12 2012 2012 HOH HOH F . I 6 HOH 13 2013 2013 HOH HOH F . I 6 HOH 14 2014 2014 HOH HOH F . I 6 HOH 15 2015 2015 HOH HOH F . I 6 HOH 16 2016 2016 HOH HOH F . I 6 HOH 17 2017 2017 HOH HOH F . I 6 HOH 18 2018 2018 HOH HOH F . I 6 HOH 19 2019 2019 HOH HOH F . I 6 HOH 20 2020 2020 HOH HOH F . I 6 HOH 21 2021 2021 HOH HOH F . I 6 HOH 22 2022 2022 HOH HOH F . I 6 HOH 23 2023 2023 HOH HOH F . I 6 HOH 24 2024 2024 HOH HOH F . I 6 HOH 25 2025 2025 HOH HOH F . I 6 HOH 26 2026 2026 HOH HOH F . J 6 HOH 1 2001 2001 HOH HOH G . J 6 HOH 2 2002 2002 HOH HOH G . J 6 HOH 3 2003 2003 HOH HOH G . J 6 HOH 4 2004 2004 HOH HOH G . J 6 HOH 5 2005 2005 HOH HOH G . J 6 HOH 6 2006 2006 HOH HOH G . J 6 HOH 7 2007 2007 HOH HOH G . J 6 HOH 8 2008 2008 HOH HOH G . J 6 HOH 9 2009 2009 HOH HOH G . J 6 HOH 10 2010 2010 HOH HOH G . J 6 HOH 11 2011 2011 HOH HOH G . J 6 HOH 12 2012 2012 HOH HOH G . J 6 HOH 13 2013 2013 HOH HOH G . J 6 HOH 14 2014 2014 HOH HOH G . J 6 HOH 15 2015 2015 HOH HOH G . J 6 HOH 16 2016 2016 HOH HOH G . J 6 HOH 17 2017 2017 HOH HOH G . J 6 HOH 18 2018 2018 HOH HOH G . J 6 HOH 19 2019 2019 HOH HOH G . J 6 HOH 20 2020 2020 HOH HOH G . J 6 HOH 21 2021 2021 HOH HOH G . J 6 HOH 22 2022 2022 HOH HOH G . J 6 HOH 23 2023 2023 HOH HOH G . J 6 HOH 24 2024 2024 HOH HOH G . J 6 HOH 25 2025 2025 HOH HOH G . J 6 HOH 26 2026 2026 HOH HOH G . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2260 ? 1 MORE -11.0 ? 1 'SSA (A^2)' 8020 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 43 ? A CYS 437 ? 1_555 ZN ? D ZN . ? A ZN 1484 ? 1_555 SG ? A CYS 38 ? A CYS 432 ? 1_555 121.8 ? 2 SG ? A CYS 43 ? A CYS 437 ? 1_555 ZN ? D ZN . ? A ZN 1484 ? 1_555 NE2 ? A HIS 56 ? A HIS 450 ? 1_555 104.6 ? 3 SG ? A CYS 38 ? A CYS 432 ? 1_555 ZN ? D ZN . ? A ZN 1484 ? 1_555 NE2 ? A HIS 56 ? A HIS 450 ? 1_555 109.9 ? 4 SG ? A CYS 43 ? A CYS 437 ? 1_555 ZN ? D ZN . ? A ZN 1484 ? 1_555 NE2 ? A HIS 60 ? A HIS 454 ? 1_555 108.9 ? 5 SG ? A CYS 38 ? A CYS 432 ? 1_555 ZN ? D ZN . ? A ZN 1484 ? 1_555 NE2 ? A HIS 60 ? A HIS 454 ? 1_555 105.9 ? 6 NE2 ? A HIS 56 ? A HIS 450 ? 1_555 ZN ? D ZN . ? A ZN 1484 ? 1_555 NE2 ? A HIS 60 ? A HIS 454 ? 1_555 104.4 ? 7 SG ? A CYS 71 ? A CYS 465 ? 1_555 ZN ? E ZN . ? A ZN 1485 ? 1_555 NE2 ? A HIS 84 ? A HIS 478 ? 1_555 99.4 ? 8 SG ? A CYS 71 ? A CYS 465 ? 1_555 ZN ? E ZN . ? A ZN 1485 ? 1_555 NE2 ? A HIS 88 ? A HIS 482 ? 1_555 111.7 ? 9 NE2 ? A HIS 84 ? A HIS 478 ? 1_555 ZN ? E ZN . ? A ZN 1485 ? 1_555 NE2 ? A HIS 88 ? A HIS 482 ? 1_555 100.3 ? 10 SG ? A CYS 71 ? A CYS 465 ? 1_555 ZN ? E ZN . ? A ZN 1485 ? 1_555 SG ? A CYS 68 ? A CYS 462 ? 1_555 121.5 ? 11 NE2 ? A HIS 84 ? A HIS 478 ? 1_555 ZN ? E ZN . ? A ZN 1485 ? 1_555 SG ? A CYS 68 ? A CYS 462 ? 1_555 109.7 ? 12 NE2 ? A HIS 88 ? A HIS 482 ? 1_555 ZN ? E ZN . ? A ZN 1485 ? 1_555 SG ? A CYS 68 ? A CYS 462 ? 1_555 111.3 ? 13 NE2 ? A HIS 26 ? A HIS 420 ? 1_555 ZN ? F ZN . ? A ZN 1486 ? 1_555 NE2 ? A HIS 30 ? A HIS 424 ? 1_555 85.8 ? 14 NE2 ? A HIS 26 ? A HIS 420 ? 1_555 ZN ? F ZN . ? A ZN 1486 ? 1_555 SG ? A CYS 8 ? A CYS 402 ? 1_555 111.7 ? 15 NE2 ? A HIS 30 ? A HIS 424 ? 1_555 ZN ? F ZN . ? A ZN 1486 ? 1_555 SG ? A CYS 8 ? A CYS 402 ? 1_555 109.1 ? 16 NE2 ? A HIS 26 ? A HIS 420 ? 1_555 ZN ? F ZN . ? A ZN 1486 ? 1_555 SG ? A CYS 13 ? A CYS 407 ? 1_555 102.1 ? 17 NE2 ? A HIS 30 ? A HIS 424 ? 1_555 ZN ? F ZN . ? A ZN 1486 ? 1_555 SG ? A CYS 13 ? A CYS 407 ? 1_555 110.6 ? 18 SG ? A CYS 8 ? A CYS 402 ? 1_555 ZN ? F ZN . ? A ZN 1486 ? 1_555 SG ? A CYS 13 ? A CYS 407 ? 1_555 128.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-07 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-10-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Source and taxonomy' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 19.3174 30.8401 10.9354 0.1787 0.1986 0.2199 0.1802 -0.0132 -0.0233 10.9068 3.2251 4.5017 -2.0744 6.8488 -0.6343 -0.3963 -0.4428 0.3229 0.0035 0.0379 0.6784 -0.3432 -0.3578 0.3584 'X-RAY DIFFRACTION' 2 ? refined 38.4018 17.1271 9.1400 0.0568 0.0351 0.0649 -0.0072 0.0035 -0.0024 1.8088 0.9600 2.6822 -0.0062 0.3309 0.6003 0.0176 -0.0838 -0.1243 -0.0476 0.0245 -0.0932 -0.0469 -0.0182 -0.0422 'X-RAY DIFFRACTION' 3 ? refined 43.9865 17.9665 19.5026 0.0372 0.1055 0.1404 -0.0181 -0.0479 0.1037 0.9560 0.4798 3.2531 -0.6516 -1.7596 1.2217 -0.0121 -0.1374 -0.0228 0.0121 0.0259 -0.0497 0.0103 0.2182 -0.0138 'X-RAY DIFFRACTION' 4 ? refined 38.8876 18.3767 20.4086 0.0809 0.0920 0.0154 -0.0409 -0.0112 0.0121 2.2969 1.1078 2.2049 -0.4308 2.0126 0.2913 0.2112 -0.1652 0.0715 0.0353 -0.2489 -0.0695 0.2099 -0.3292 0.0378 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 397 ? ? A 428 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 429 ? ? A 483 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 G 1 ? ? G 7 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 F 1 ? ? F 7 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0082 ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 SHELX phasing 'SHARP REFMAC5 COOT' ? 4 # _pdbx_entry_details.entry_id 2WBS _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;GLYCEROL (GOL): CRYO PROTECTANT ZINC ION (ZN): ZINC FINGER MOTIF ; _pdbx_entry_details.sequence_details ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OP2 _pdbx_validate_close_contact.auth_asym_id_1 F _pdbx_validate_close_contact.auth_comp_id_1 DG _pdbx_validate_close_contact.auth_seq_id_1 3 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 F _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2009 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.06 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" G DG 3 ? ? "C3'" G DG 3 ? ? 1.381 1.419 -0.038 0.006 N 2 1 "O3'" G DC 7 ? ? "C3'" G DC 7 ? ? 1.379 1.419 -0.040 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" F DG 3 ? ? P F DG 3 ? ? OP2 F DG 3 ? ? 99.19 105.70 -6.51 0.90 N 2 1 "C1'" F DC 7 ? ? "O4'" F DC 7 ? ? "C4'" F DC 7 ? ? 103.82 110.10 -6.28 1.00 N 3 1 "O4'" G DG 1 ? ? "C4'" G DG 1 ? ? "C3'" G DG 1 ? ? 101.83 104.50 -2.67 0.40 N 4 1 "C3'" G DC 4 ? ? "O3'" G DC 4 ? ? P G DC 5 ? ? 127.81 119.70 8.11 1.20 Y 5 1 "O4'" G DC 5 ? ? "C4'" G DC 5 ? ? "C3'" G DC 5 ? ? 111.04 106.00 5.04 0.60 N 6 1 "C5'" G DC 5 ? ? "C4'" G DC 5 ? ? "C3'" G DC 5 ? ? 101.23 114.10 -12.87 1.80 N 7 1 N3 G DT 6 ? ? C4 G DT 6 ? ? O4 G DT 6 ? ? 124.03 119.90 4.13 0.60 N 8 1 C5 G DT 6 ? ? C4 G DT 6 ? ? O4 G DT 6 ? ? 119.90 124.90 -5.00 0.70 N 9 1 "O4'" G DC 7 ? ? "C1'" G DC 7 ? ? N1 G DC 7 ? ? 110.61 108.30 2.31 0.30 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id CYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 407 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -97.48 _pdbx_validate_torsion.psi -78.45 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 2015 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.95 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 440 ? CG ? A LYS 46 CG 2 1 Y 1 A LYS 440 ? CD ? A LYS 46 CD 3 1 Y 1 A LYS 440 ? CE ? A LYS 46 CE 4 1 Y 1 A LYS 440 ? NZ ? A LYS 46 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 395 ? A LYS 1 2 1 Y 1 A ARG 396 ? A ARG 2 # _ndb_struct_conf_na.entry_id 2WBS _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 7 1_555 -0.200 -0.170 -0.026 0.449 -8.524 -0.252 1 F_DG1:DC7_G F 1 ? G 7 ? 19 1 1 B DA 2 1_555 C DT 6 1_555 0.089 -0.160 0.076 2.302 -14.074 3.206 2 F_DA2:DT6_G F 2 ? G 6 ? 20 1 1 B DG 3 1_555 C DC 5 1_555 -0.165 -0.148 -0.060 -3.563 -10.256 -0.461 3 F_DG3:DC5_G F 3 ? G 5 ? 19 1 1 B DG 4 1_555 C DC 4 1_555 -0.192 -0.207 0.067 -4.890 -8.272 -0.660 4 F_DG4:DC4_G F 4 ? G 4 ? 19 1 1 B DC 5 1_555 C DG 3 1_555 0.172 -0.147 -0.056 2.582 -3.630 0.457 5 F_DC5:DG3_G F 5 ? G 3 ? 19 1 1 B DG 6 1_555 C DC 2 1_555 -0.283 -0.162 0.322 4.812 -9.461 -4.248 6 F_DG6:DC2_G F 6 ? G 2 ? 19 1 1 B DC 7 1_555 C DG 1 1_555 0.216 -0.205 0.185 -1.659 -4.594 -1.759 7 F_DC7:DG1_G F 7 ? G 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 7 1_555 B DA 2 1_555 C DT 6 1_555 0.259 -0.412 3.186 -1.022 4.986 30.959 -1.666 -0.665 3.073 9.261 1.898 31.364 1 FF_DG1DA2:DT6DC7_GG F 1 ? G 7 ? F 2 ? G 6 ? 1 B DA 2 1_555 C DT 6 1_555 B DG 3 1_555 C DC 5 1_555 -0.899 -0.484 3.344 -2.343 7.754 33.928 -2.006 1.139 3.212 13.058 3.946 34.854 2 FF_DA2DG3:DC5DT6_GG F 2 ? G 6 ? F 3 ? G 5 ? 1 B DG 3 1_555 C DC 5 1_555 B DG 4 1_555 C DC 4 1_555 -0.294 -0.518 3.348 -2.880 5.435 36.528 -1.557 0.070 3.253 8.595 4.555 37.025 3 FF_DG3DG4:DC4DC5_GG F 3 ? G 5 ? F 4 ? G 4 ? 1 B DG 4 1_555 C DC 4 1_555 B DC 5 1_555 C DG 3 1_555 0.516 -0.279 3.093 2.114 2.273 27.516 -1.105 -0.594 3.090 4.759 -4.425 27.687 4 FF_DG4DC5:DG3DC4_GG F 4 ? G 4 ? F 5 ? G 3 ? 1 B DC 5 1_555 C DG 3 1_555 B DG 6 1_555 C DC 2 1_555 -0.989 0.601 3.263 -4.315 2.241 37.248 0.636 0.963 3.381 3.490 6.720 37.552 5 FF_DC5DG6:DC2DG3_GG F 5 ? G 3 ? F 6 ? G 2 ? 1 B DG 6 1_555 C DC 2 1_555 B DC 7 1_555 C DG 1 1_555 1.067 -0.254 3.464 1.709 -4.740 39.189 0.221 -1.364 3.511 -7.031 -2.536 39.499 6 FF_DG6DC7:DG1DC2_GG F 6 ? G 2 ? F 7 ? G 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 GLYCEROL GOL 6 water HOH #