HEADER DNA BINDING PROTEIN 03-MAR-09 2WBT TITLE THE STRUCTURE OF A DOUBLE C2H2 ZINC FINGER PROTEIN FROM A TITLE 2 HYPERTHERMOPHILIC ARCHAEAL VIRUS IN THE ABSENCE OF DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-129; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DISULFIDE BOND BETWEEN C 121 AND C 127 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS VIRUS 1; SOURCE 3 ORGANISM_TAXID: 244589; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PDEST14; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PEXP14-B129 KEYWDS DNA-BINDING PROTEIN, ZINC FINGER, METAL-BINDING, DNA-BINDING PROTEIN KEYWDS 2 SSV, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.J.EILERS,S.MENON,A.B.WINDHAM,P.KRAFT,M.DLAKIC,M.J.YOUNG, AUTHOR 2 C.M.LAWRENCE REVDAT 4 16-OCT-24 2WBT 1 REMARK LINK REVDAT 3 08-MAY-19 2WBT 1 REMARK REVDAT 2 13-JUL-11 2WBT 1 VERSN REVDAT 1 31-MAR-10 2WBT 0 JRNL AUTH B.J.EILERS,S.MENON,A.B.WINDHAM,P.KRAFT,M.DLAKIC,M.J.YOUNG, JRNL AUTH 2 C.M.LAWRENCE JRNL TITL THE STRUCTURE OF A DOUBLE C2H2 ZINC FINGER PROTEIN FROM A JRNL TITL 2 HYPERTHERMOPHILIC ARCHAEAL VIRUS IN THE ABSENCE OF DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 78.9 REMARK 3 NUMBER OF REFLECTIONS : 6954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 360 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 502 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2780 REMARK 3 BIN FREE R VALUE SET COUNT : 24 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1905 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.15000 REMARK 3 B33 (A**2) : -0.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.423 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.290 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.596 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.905 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1967 ; 0.034 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1377 ; 0.009 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2658 ; 1.124 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3379 ; 1.005 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 238 ; 5.289 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;30.645 ;23.247 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 385 ;14.512 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.386 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2085 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 373 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 460 ; 0.166 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1332 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 953 ; 0.169 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 981 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 39 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.020 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.426 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1566 ; 0.346 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 469 ; 0.031 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1965 ; 0.364 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 879 ; 0.317 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 692 ; 0.541 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 7 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 77 A 77 1 REMARK 3 1 B 77 B 77 1 REMARK 3 2 A 80 A 80 1 REMARK 3 2 B 80 B 80 1 REMARK 3 3 A 93 A 93 1 REMARK 3 3 B 93 B 93 1 REMARK 3 4 A 103 A 103 1 REMARK 3 4 B 103 B 103 1 REMARK 3 5 A 106 A 106 1 REMARK 3 5 B 106 B 106 1 REMARK 3 6 A 119 A 119 1 REMARK 3 6 B 119 B 119 1 REMARK 3 7 A 124 A 124 1 REMARK 3 7 B 124 B 124 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 88 ; 0.07 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 88 ; 0.07 ; 0.05 REMARK 3 TIGHT THERMAL 1 A (A**2): 88 ; 0.30 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 88 ; 0.30 ; 0.50 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 36.4950 66.0360 2.4150 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.2345 REMARK 3 T33: 0.1678 T12: 0.0013 REMARK 3 T13: 0.1213 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 7.2818 L22: 10.2946 REMARK 3 L33: 0.6384 L12: -5.1293 REMARK 3 L13: 2.1382 L23: -1.7713 REMARK 3 S TENSOR REMARK 3 S11: 0.5273 S12: 0.4539 S13: 0.1648 REMARK 3 S21: -1.0402 S22: -0.1168 S23: -1.4762 REMARK 3 S31: -0.4778 S32: 0.3370 S33: -0.4105 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8740 57.8820 19.0040 REMARK 3 T TENSOR REMARK 3 T11: 0.2898 T22: 0.3204 REMARK 3 T33: 0.4717 T12: -0.0004 REMARK 3 T13: -0.1766 T23: -0.1662 REMARK 3 L TENSOR REMARK 3 L11: 11.6203 L22: 3.5461 REMARK 3 L33: 1.7680 L12: 4.7896 REMARK 3 L13: 2.8972 L23: 2.4762 REMARK 3 S TENSOR REMARK 3 S11: -0.2577 S12: 0.0519 S13: 2.5343 REMARK 3 S21: 1.3582 S22: -0.4855 S23: -0.7853 REMARK 3 S31: -0.8305 S32: 0.3304 S33: 0.7432 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 43.4230 47.4060 11.8810 REMARK 3 T TENSOR REMARK 3 T11: -0.0068 T22: 0.2508 REMARK 3 T33: 0.2037 T12: -0.0161 REMARK 3 T13: -0.1313 T23: 0.0279 REMARK 3 L TENSOR REMARK 3 L11: 1.3633 L22: 14.5105 REMARK 3 L33: 8.5219 L12: 0.5362 REMARK 3 L13: -0.3062 L23: -4.3929 REMARK 3 S TENSOR REMARK 3 S11: 0.1746 S12: 0.4295 S13: 0.8841 REMARK 3 S21: -0.6357 S22: 0.2449 S23: -1.1981 REMARK 3 S31: 0.2917 S32: 1.2475 S33: -0.4195 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7950 36.4120 15.8560 REMARK 3 T TENSOR REMARK 3 T11: 0.0284 T22: 0.1639 REMARK 3 T33: -0.0642 T12: 0.0299 REMARK 3 T13: -0.0072 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.8506 L22: 4.5462 REMARK 3 L33: 4.1700 L12: 2.1583 REMARK 3 L13: -2.0827 L23: -3.3170 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: -0.2059 S13: 0.0491 REMARK 3 S21: -0.3111 S22: -0.1240 S23: 0.1149 REMARK 3 S31: 0.4123 S32: 0.3343 S33: 0.0887 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5280 25.6100 13.1490 REMARK 3 T TENSOR REMARK 3 T11: 0.0839 T22: 0.1797 REMARK 3 T33: -0.0265 T12: -0.0378 REMARK 3 T13: -0.0345 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.5109 L22: 1.6762 REMARK 3 L33: 7.2456 L12: 0.8462 REMARK 3 L13: -1.4033 L23: -2.3432 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: 0.1037 S13: -0.3735 REMARK 3 S21: 0.1911 S22: -0.0164 S23: -0.0238 REMARK 3 S31: 0.4320 S32: -0.4179 S33: 0.0316 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): 37.8180 55.5440 1.6210 REMARK 3 T TENSOR REMARK 3 T11: -0.1042 T22: 0.0099 REMARK 3 T33: 0.3235 T12: 0.0378 REMARK 3 T13: 0.0240 T23: 0.0993 REMARK 3 L TENSOR REMARK 3 L11: 10.3555 L22: 12.2036 REMARK 3 L33: 13.2570 L12: -2.3594 REMARK 3 L13: -2.2954 L23: -0.5104 REMARK 3 S TENSOR REMARK 3 S11: 0.1054 S12: 0.7091 S13: 0.1348 REMARK 3 S21: -0.9877 S22: -0.1343 S23: -0.1557 REMARK 3 S31: -0.1437 S32: 0.0625 S33: 0.0289 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 59 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3610 49.9850 12.5810 REMARK 3 T TENSOR REMARK 3 T11: -0.1676 T22: 0.0235 REMARK 3 T33: -0.0386 T12: -0.0267 REMARK 3 T13: -0.0021 T23: -0.1180 REMARK 3 L TENSOR REMARK 3 L11: 11.6428 L22: 6.4436 REMARK 3 L33: 18.5801 L12: -3.9211 REMARK 3 L13: 4.8947 L23: -5.7472 REMARK 3 S TENSOR REMARK 3 S11: -0.5535 S12: -1.1262 S13: 0.9535 REMARK 3 S21: 0.3784 S22: 0.1970 S23: -0.4884 REMARK 3 S31: -0.4097 S32: -0.7089 S33: 0.3565 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 60 B 89 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7440 30.6560 4.0820 REMARK 3 T TENSOR REMARK 3 T11: -0.0059 T22: 0.2061 REMARK 3 T33: -0.1055 T12: -0.0231 REMARK 3 T13: 0.0324 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 3.9280 L22: 3.4268 REMARK 3 L33: 4.2666 L12: -3.5257 REMARK 3 L13: -1.2100 L23: 2.0964 REMARK 3 S TENSOR REMARK 3 S11: 0.2134 S12: 0.0274 S13: -0.0513 REMARK 3 S21: -0.2549 S22: -0.0888 S23: -0.1959 REMARK 3 S31: -0.1955 S32: -0.0560 S33: -0.1246 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 90 B 98 REMARK 3 ORIGIN FOR THE GROUP (A): 45.4580 19.9430 3.0350 REMARK 3 T TENSOR REMARK 3 T11: 0.0288 T22: 0.0998 REMARK 3 T33: -0.0775 T12: -0.0177 REMARK 3 T13: -0.0131 T23: 0.0397 REMARK 3 L TENSOR REMARK 3 L11: 18.1447 L22: 10.9448 REMARK 3 L33: 6.4826 L12: -7.3666 REMARK 3 L13: -4.8246 L23: 2.2154 REMARK 3 S TENSOR REMARK 3 S11: 0.6444 S12: 0.3265 S13: -0.8893 REMARK 3 S21: -0.1236 S22: -0.4860 S23: 0.3097 REMARK 3 S31: 0.5456 S32: 0.2859 S33: -0.1584 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 99 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): 43.1680 25.9970 16.6370 REMARK 3 T TENSOR REMARK 3 T11: 0.0860 T22: 0.1683 REMARK 3 T33: -0.0745 T12: 0.0003 REMARK 3 T13: -0.0087 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 8.1778 L22: 2.9709 REMARK 3 L33: 2.8822 L12: -0.4226 REMARK 3 L13: 0.1454 L23: -0.5806 REMARK 3 S TENSOR REMARK 3 S11: 0.2103 S12: -0.3782 S13: -0.5511 REMARK 3 S21: 0.2128 S22: 0.2189 S23: -0.0930 REMARK 3 S31: 0.3686 S32: 0.1333 S33: -0.4292 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2WBT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1290038954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2833, 1.2830, 1.1696 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8209 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.7 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 0.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP VAPOR DIFFUSION, 20 MG/ML REMARK 280 OF B129 IN 20 MM BIS-TRIS, PH 6.5, 60 MM NACL MIXED WITH 0.1 M REMARK 280 AMMONIUM CITRATE DIBASIC, 10-14 % PEG 4000, PH 5.3, VAPOR REMARK 280 DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 25.68900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.23200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.68900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.23200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 SER B 4 REMARK 465 ASP B 5 REMARK 465 VAL B 6 REMARK 465 ASP B 7 REMARK 465 SER B 8 REMARK 465 GLY B 9 REMARK 465 SER B 10 REMARK 465 LYS B 11 REMARK 465 LYS B 12 REMARK 465 TYR B 13 REMARK 465 LEU B 14 REMARK 465 SER B 15 REMARK 465 ASN B 16 REMARK 465 HIS B 17 REMARK 465 SER B 129 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 77 CB CYS B 77 SG 0.192 REMARK 500 CYS B 80 CB CYS B 80 SG -0.136 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 7 73.16 -154.28 REMARK 500 VAL A 105 -60.28 -94.38 REMARK 500 ASN B 125 10.20 81.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1130 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 77 SG REMARK 620 2 CYS A 80 SG 117.5 REMARK 620 3 HIS A 93 NE2 101.7 95.1 REMARK 620 4 GLU A 98 OE1 123.7 112.6 97.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1131 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 103 SG REMARK 620 2 CYS A 106 SG 129.4 REMARK 620 3 HIS A 119 NE2 105.4 93.6 REMARK 620 4 HIS A 124 NE2 108.7 115.9 95.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1129 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 77 SG REMARK 620 2 CYS B 80 SG 108.3 REMARK 620 3 HIS B 93 NE2 108.7 113.3 REMARK 620 4 GLU B 98 OE1 120.6 114.4 90.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1130 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 103 SG REMARK 620 2 CYS B 106 SG 130.5 REMARK 620 3 HIS B 119 NE2 109.1 87.9 REMARK 620 4 HIS B 124 NE2 110.9 114.0 93.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1130 DBREF 2WBT A 1 129 UNP P20201 B129_SSV1 1 129 DBREF 2WBT B 1 129 UNP P20201 B129_SSV1 1 129 SEQRES 1 A 129 MET THR GLU SER ASP VAL ASP SER GLY SER LYS LYS TYR SEQRES 2 A 129 LEU SER ASN HIS LYS GLY ILE PHE ILE HIS VAL THR LEU SEQRES 3 A 129 GLU GLU LEU LYS ARG TYR HIS GLN LEU THR PRO GLU GLN SEQRES 4 A 129 LYS ARG LEU ILE ARG ALA ILE VAL LYS THR LEU ILE HIS SEQRES 5 A 129 ASN PRO GLN LEU LEU ASP GLU SER SER TYR LEU TYR ARG SEQRES 6 A 129 LEU LEU ALA SER LYS ALA ILE SER GLN PHE VAL CYS PRO SEQRES 7 A 129 LEU CYS LEU MET PRO PHE SER SER SER VAL SER LEU LYS SEQRES 8 A 129 GLN HIS ILE ARG TYR THR GLU HIS THR LYS VAL CYS PRO SEQRES 9 A 129 VAL CYS LYS LYS GLU PHE THR SER THR ASP SER ALA LEU SEQRES 10 A 129 ASP HIS VAL CYS LYS LYS HIS ASN ILE CYS VAL SER SEQRES 1 B 129 MET THR GLU SER ASP VAL ASP SER GLY SER LYS LYS TYR SEQRES 2 B 129 LEU SER ASN HIS LYS GLY ILE PHE ILE HIS VAL THR LEU SEQRES 3 B 129 GLU GLU LEU LYS ARG TYR HIS GLN LEU THR PRO GLU GLN SEQRES 4 B 129 LYS ARG LEU ILE ARG ALA ILE VAL LYS THR LEU ILE HIS SEQRES 5 B 129 ASN PRO GLN LEU LEU ASP GLU SER SER TYR LEU TYR ARG SEQRES 6 B 129 LEU LEU ALA SER LYS ALA ILE SER GLN PHE VAL CYS PRO SEQRES 7 B 129 LEU CYS LEU MET PRO PHE SER SER SER VAL SER LEU LYS SEQRES 8 B 129 GLN HIS ILE ARG TYR THR GLU HIS THR LYS VAL CYS PRO SEQRES 9 B 129 VAL CYS LYS LYS GLU PHE THR SER THR ASP SER ALA LEU SEQRES 10 B 129 ASP HIS VAL CYS LYS LYS HIS ASN ILE CYS VAL SER HET ZN A1130 1 HET ZN A1131 1 HET ZN B1129 1 HET ZN B1130 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *17(H2 O) HELIX 1 1 LYS A 11 ASN A 16 5 6 HELIX 2 2 THR A 25 HIS A 33 1 9 HELIX 3 3 THR A 36 ASN A 53 1 18 HELIX 4 4 PRO A 54 LEU A 57 5 4 HELIX 5 5 GLU A 59 SER A 73 1 15 HELIX 6 6 SER A 86 THR A 97 1 12 HELIX 7 7 SER A 112 LYS A 123 1 12 HELIX 8 8 THR B 25 HIS B 33 1 9 HELIX 9 9 THR B 36 ASN B 53 1 18 HELIX 10 10 LEU B 56 SER B 73 1 18 HELIX 11 11 SER B 86 THR B 97 1 12 HELIX 12 12 SER B 112 ASN B 125 1 14 SHEET 1 AA 2 ILE A 20 HIS A 23 0 SHEET 2 AA 2 GLY B 19 ILE B 22 -1 O ILE B 20 N ILE A 22 SHEET 1 AB 2 PHE A 75 VAL A 76 0 SHEET 2 AB 2 PRO A 83 PHE A 84 -1 O PHE A 84 N PHE A 75 SHEET 1 BA 2 PHE B 75 VAL B 76 0 SHEET 2 BA 2 PRO B 83 PHE B 84 -1 O PHE B 84 N PHE B 75 SSBOND 1 CYS A 121 CYS A 127 1555 1555 2.04 SSBOND 2 CYS B 121 CYS B 127 1555 1555 2.03 LINK SG CYS A 77 ZN ZN A1130 1555 1555 2.34 LINK SG CYS A 80 ZN ZN A1130 1555 1555 2.25 LINK NE2 HIS A 93 ZN ZN A1130 1555 1555 2.32 LINK OE1 GLU A 98 ZN ZN A1130 1555 1555 2.16 LINK SG CYS A 103 ZN ZN A1131 1555 1555 2.26 LINK SG CYS A 106 ZN ZN A1131 1555 1555 2.13 LINK NE2 HIS A 119 ZN ZN A1131 1555 1555 2.04 LINK NE2 HIS A 124 ZN ZN A1131 1555 1555 2.18 LINK SG CYS B 77 ZN ZN B1129 1555 1555 2.07 LINK SG CYS B 80 ZN ZN B1129 1555 1555 2.22 LINK NE2 HIS B 93 ZN ZN B1129 1555 1555 2.16 LINK OE1 GLU B 98 ZN ZN B1129 1555 1555 2.17 LINK SG CYS B 103 ZN ZN B1130 1555 1555 2.18 LINK SG CYS B 106 ZN ZN B1130 1555 1555 2.19 LINK NE2 HIS B 119 ZN ZN B1130 1555 1555 2.22 LINK NE2 HIS B 124 ZN ZN B1130 1555 1555 2.23 SITE 1 AC1 4 CYS A 77 CYS A 80 HIS A 93 GLU A 98 SITE 1 AC2 4 CYS B 77 CYS B 80 HIS B 93 GLU B 98 SITE 1 AC3 4 CYS A 103 CYS A 106 HIS A 119 HIS A 124 SITE 1 AC4 4 CYS B 103 CYS B 106 HIS B 119 HIS B 124 CRYST1 51.378 120.464 51.687 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019464 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008301 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019347 0.00000