data_2WBU # _entry.id 2WBU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2WBU pdb_00002wbu 10.2210/pdb2wbu/pdb PDBE EBI-38959 ? ? WWPDB D_1290038959 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2WBS _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'CRYSTAL STRUCTURE IN COMPLEX WITH DNA' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2WBU _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2009-03-05 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Schuetz, A.' 1 'Zocher, G.' 2 'Carstanjen, D.' 3 'Heinemann, U.' 4 # _citation.id primary _citation.title 'The Structure of the Klf4 DNA-Binding Domain Links to Self-Renewal and Macrophage Differentiation.' _citation.journal_abbrev 'Cell.Mol.Life Sci.' _citation.journal_volume 68 _citation.page_first 3121 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM ? _citation.country SZ _citation.journal_id_ISSN 1420-682X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21290164 _citation.pdbx_database_id_DOI 10.1007/S00018-010-0618-X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Schuetz, A.' 1 ? primary 'Nana, D.' 2 ? primary 'Rose, C.' 3 ? primary 'Zocher, G.' 4 ? primary 'Milanovic, M.' 5 ? primary 'Koenigsmann, J.' 6 ? primary 'Blasig, R.' 7 ? primary 'Heinemann, U.' 8 ? primary 'Carstanjen, D.' 9 ? # _cell.entry_id 2WBU _cell.length_a 50.275 _cell.length_b 50.275 _cell.length_c 131.027 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2WBU _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'KRUEPPEL-LIKE FACTOR 4' 10572.937 1 ? ? 'RESIDUES 396-483' ? 2 polymer syn ;5'-D(*DGP*DAP*DGP*DGP*DCP*DGP*DTP* DGP*DGP*DC)-3' ; 3126.040 1 ? ? ? ? 3 polymer syn ;5'-D(*DGP*DCP*DCP*DAP*DCP*DGP*DCP* DCP*DTP*DC)-3' ; 2965.945 1 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 3 ? ? ? ? 5 water nat water 18.015 21 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'GUT-ENRICHED KRUEPPEL-LIKE FACTOR, EPITHELIAL ZINC FINGER PROTEIN EZF' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD HLALHMKRHF ; ;GSRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSD HLALHMKRHF ; A ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DG)(DG)(DC)(DG)(DT)(DG)(DG)(DC)' GAGGCGTGGC B ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DC)(DA)(DC)(DG)(DC)(DC)(DT)(DC)' GCCACGCCTC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 ARG n 1 4 THR n 1 5 ALA n 1 6 THR n 1 7 HIS n 1 8 THR n 1 9 CYS n 1 10 ASP n 1 11 TYR n 1 12 ALA n 1 13 GLY n 1 14 CYS n 1 15 GLY n 1 16 LYS n 1 17 THR n 1 18 TYR n 1 19 THR n 1 20 LYS n 1 21 SER n 1 22 SER n 1 23 HIS n 1 24 LEU n 1 25 LYS n 1 26 ALA n 1 27 HIS n 1 28 LEU n 1 29 ARG n 1 30 THR n 1 31 HIS n 1 32 THR n 1 33 GLY n 1 34 GLU n 1 35 LYS n 1 36 PRO n 1 37 TYR n 1 38 HIS n 1 39 CYS n 1 40 ASP n 1 41 TRP n 1 42 ASP n 1 43 GLY n 1 44 CYS n 1 45 GLY n 1 46 TRP n 1 47 LYS n 1 48 PHE n 1 49 ALA n 1 50 ARG n 1 51 SER n 1 52 ASP n 1 53 GLU n 1 54 LEU n 1 55 THR n 1 56 ARG n 1 57 HIS n 1 58 TYR n 1 59 ARG n 1 60 LYS n 1 61 HIS n 1 62 THR n 1 63 GLY n 1 64 HIS n 1 65 ARG n 1 66 PRO n 1 67 PHE n 1 68 GLN n 1 69 CYS n 1 70 GLN n 1 71 LYS n 1 72 CYS n 1 73 ASP n 1 74 ARG n 1 75 ALA n 1 76 PHE n 1 77 SER n 1 78 ARG n 1 79 SER n 1 80 ASP n 1 81 HIS n 1 82 LEU n 1 83 ALA n 1 84 LEU n 1 85 HIS n 1 86 MET n 1 87 LYS n 1 88 ARG n 1 89 HIS n 1 90 PHE n 2 1 DG n 2 2 DA n 2 3 DG n 2 4 DG n 2 5 DC n 2 6 DG n 2 7 DT n 2 8 DG n 2 9 DG n 2 10 DC n 3 1 DG n 3 2 DC n 3 3 DC n 3 4 DA n 3 5 DC n 3 6 DG n 3 7 DC n 3 8 DC n 3 9 DT n 3 10 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'HOUSE MOUSE' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'MUS MUSCULUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PQLINKH _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2WBU 1 ? ? 2WBU ? 2 UNP KLF4_MOUSE 1 ? ? Q60793 ? 3 PDB 2WBU 2 ? ? 2WBU ? 4 PDB 2WBU 3 ? ? 2WBU ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2WBU A 1 ? 2 ? 2WBU 394 ? 395 ? 394 395 2 2 2WBU A 3 ? 90 ? Q60793 396 ? 483 ? 396 483 3 3 2WBU B 1 ? 10 ? 2WBU 1 ? 10 ? 1 10 4 4 2WBU C 1 ? 10 ? 2WBU 1 ? 10 ? 1 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2WBU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 55.98 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '27 % PEG 3350, 0.2 M NAACETATE, 0.1 M TRIS-HCL PH 8.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2009-01-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91841 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.pdbx_synchrotron_site BESSY _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_wavelength 0.91841 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2WBU _reflns.observed_criterion_sigma_I 4.2 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 46.93 _reflns.d_resolution_high 2.50 _reflns.number_obs 6277 _reflns.number_all ? _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs 0.08 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 20.40 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.56 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.64 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.20 _reflns_shell.pdbx_redundancy 8.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2WBU _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 5773 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 46.93 _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs 100.0 _refine.ls_R_factor_obs 0.220 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.214 _refine.ls_R_factor_R_free 0.278 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.000 _refine.ls_number_reflns_R_free 503 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.947 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.B_iso_mean 23.05 _refine.aniso_B[1][1] 2.22000 _refine.aniso_B[2][2] 2.22000 _refine.aniso_B[3][3] -4.45000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2WBS' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.530 _refine.pdbx_overall_ESU_R_Free 0.317 _refine.overall_SU_ML 0.237 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 21.518 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 708 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 21 _refine_hist.number_atoms_total 1136 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low 46.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.021 ? 1184 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.355 2.346 ? 1676 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.698 5.000 ? 84 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.399 20.513 ? 39 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.050 15.000 ? 123 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 30.210 15.000 ? 8 'X-RAY DIFFRACTION' ? r_chiral_restr 0.086 0.200 ? 170 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 784 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.550 1.500 ? 421 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.080 2.000 ? 670 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.900 3.000 ? 763 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 2.663 4.500 ? 1006 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.50 _refine_ls_shell.d_res_low 2.56 _refine_ls_shell.number_reflns_R_work 410 _refine_ls_shell.R_factor_R_work 0.3040 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.4610 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 36 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2WBU _struct.title 'CRYSTAL STRUCTURE OF THE ZINC FINGER DOMAIN OF KLF4 BOUND TO ITS TARGET DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2WBU _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'TRANSCRIPTION-DNA COMPLEX, NUCLEUS, ACTIVATOR, DNA-BINDING, ZINC-FINGER, TRANSCRIPTION, METAL-BINDING, TRANSCRIPTION REGULATION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 21 ? THR A 32 ? SER A 414 THR A 425 1 ? 12 HELX_P HELX_P2 2 SER A 51 ? THR A 62 ? SER A 444 THR A 455 1 ? 12 HELX_P HELX_P3 3 SER A 79 ? LYS A 87 ? SER A 472 LYS A 480 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A CYS 9 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 402 A ZN 1486 1_555 ? ? ? ? ? ? ? 2.112 ? ? metalc2 metalc ? ? A CYS 14 SG ? ? ? 1_555 F ZN . ZN ? ? A CYS 407 A ZN 1486 1_555 ? ? ? ? ? ? ? 2.231 ? ? metalc3 metalc ? ? A HIS 27 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 420 A ZN 1486 1_555 ? ? ? ? ? ? ? 2.014 ? ? metalc4 metalc ? ? A HIS 31 NE2 ? ? ? 1_555 F ZN . ZN ? ? A HIS 424 A ZN 1486 1_555 ? ? ? ? ? ? ? 2.110 ? ? metalc5 metalc ? ? A CYS 39 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 432 A ZN 1485 1_555 ? ? ? ? ? ? ? 2.121 ? ? metalc6 metalc ? ? A CYS 44 SG ? ? ? 1_555 E ZN . ZN ? ? A CYS 437 A ZN 1485 1_555 ? ? ? ? ? ? ? 2.191 ? ? metalc7 metalc ? ? A HIS 57 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 450 A ZN 1485 1_555 ? ? ? ? ? ? ? 2.238 ? ? metalc8 metalc ? ? A HIS 61 NE2 ? ? ? 1_555 E ZN . ZN ? ? A HIS 454 A ZN 1485 1_555 ? ? ? ? ? ? ? 2.069 ? ? metalc9 metalc ? ? A CYS 69 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 462 A ZN 1484 1_555 ? ? ? ? ? ? ? 2.148 ? ? metalc10 metalc ? ? A CYS 72 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 465 A ZN 1484 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc11 metalc ? ? A HIS 85 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 478 A ZN 1484 1_555 ? ? ? ? ? ? ? 1.795 ? ? metalc12 metalc ? ? A HIS 89 NE2 ? ? ? 1_555 D ZN . ZN ? ? A HIS 482 A ZN 1484 1_555 ? ? ? ? ? ? ? 2.051 ? ? hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 10 N3 ? ? B DG 1 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 10 O2 ? ? B DG 1 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 10 N4 ? ? B DG 1 C DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 2 N1 ? ? ? 1_555 C DT 9 N3 ? ? B DA 2 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 2 N6 ? ? ? 1_555 C DT 9 O4 ? ? B DA 2 C DT 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 8 N3 ? ? B DG 3 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 8 O2 ? ? B DG 3 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 8 N4 ? ? B DG 3 C DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 7 N3 ? ? B DG 4 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 7 O2 ? ? B DG 4 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 7 N4 ? ? B DG 4 C DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 6 N1 ? ? B DC 5 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 6 O6 ? ? B DC 5 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 6 N2 ? ? B DC 5 C DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 5 N3 ? ? B DG 6 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 5 O2 ? ? B DG 6 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 5 N4 ? ? B DG 6 C DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 7 N3 ? ? ? 1_555 C DA 4 N1 ? ? B DT 7 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DT 7 O4 ? ? ? 1_555 C DA 4 N6 ? ? B DT 7 C DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 8 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 8 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 8 C DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 9 N1 ? ? ? 1_555 C DC 2 N3 ? ? B DG 9 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 9 N2 ? ? ? 1_555 C DC 2 O2 ? ? B DG 9 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 9 O6 ? ? ? 1_555 C DC 2 N4 ? ? B DG 9 C DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 10 N3 ? ? ? 1_555 C DG 1 N1 ? ? B DC 10 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 10 N4 ? ? ? 1_555 C DG 1 O6 ? ? B DC 10 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DC 10 O2 ? ? ? 1_555 C DG 1 N2 ? ? B DC 10 C DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? anti-parallel AC 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 HIS A 7 ? CYS A 9 ? HIS A 400 CYS A 402 AA 2 LYS A 16 ? TYR A 18 ? LYS A 409 TYR A 411 AB 1 TYR A 37 ? CYS A 39 ? TYR A 430 CYS A 432 AB 2 TRP A 46 ? PHE A 48 ? TRP A 439 PHE A 441 AC 1 PHE A 67 ? CYS A 69 ? PHE A 460 CYS A 462 AC 2 ARG A 74 ? PHE A 76 ? ARG A 467 PHE A 469 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N HIS A 7 ? N HIS A 400 O TYR A 18 ? O TYR A 411 AB 1 2 N TYR A 37 ? N TYR A 430 O PHE A 48 ? O PHE A 441 AC 1 2 N PHE A 67 ? N PHE A 460 O PHE A 76 ? O PHE A 469 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 1484 ? 4 'BINDING SITE FOR RESIDUE ZN A 1484' AC2 Software A ZN 1485 ? 4 'BINDING SITE FOR RESIDUE ZN A 1485' AC3 Software A ZN 1486 ? 4 'BINDING SITE FOR RESIDUE ZN A 1486' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 69 ? CYS A 462 . ? 1_555 ? 2 AC1 4 CYS A 72 ? CYS A 465 . ? 1_555 ? 3 AC1 4 HIS A 85 ? HIS A 478 . ? 1_555 ? 4 AC1 4 HIS A 89 ? HIS A 482 . ? 1_555 ? 5 AC2 4 CYS A 39 ? CYS A 432 . ? 1_555 ? 6 AC2 4 CYS A 44 ? CYS A 437 . ? 1_555 ? 7 AC2 4 HIS A 57 ? HIS A 450 . ? 1_555 ? 8 AC2 4 HIS A 61 ? HIS A 454 . ? 1_555 ? 9 AC3 4 CYS A 9 ? CYS A 402 . ? 1_555 ? 10 AC3 4 CYS A 14 ? CYS A 407 . ? 1_555 ? 11 AC3 4 HIS A 27 ? HIS A 420 . ? 1_555 ? 12 AC3 4 HIS A 31 ? HIS A 424 . ? 1_555 ? # _database_PDB_matrix.entry_id 2WBU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2WBU _atom_sites.fract_transf_matrix[1][1] 0.019891 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019891 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007632 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 394 ? ? ? A . n A 1 2 SER 2 395 ? ? ? A . n A 1 3 ARG 3 396 ? ? ? A . n A 1 4 THR 4 397 ? ? ? A . n A 1 5 ALA 5 398 ? ? ? A . n A 1 6 THR 6 399 399 THR THR A . n A 1 7 HIS 7 400 400 HIS HIS A . n A 1 8 THR 8 401 401 THR THR A . n A 1 9 CYS 9 402 402 CYS CYS A . n A 1 10 ASP 10 403 403 ASP ASP A . n A 1 11 TYR 11 404 404 TYR TYR A . n A 1 12 ALA 12 405 405 ALA ALA A . n A 1 13 GLY 13 406 406 GLY GLY A . n A 1 14 CYS 14 407 407 CYS CYS A . n A 1 15 GLY 15 408 408 GLY GLY A . n A 1 16 LYS 16 409 409 LYS LYS A . n A 1 17 THR 17 410 410 THR THR A . n A 1 18 TYR 18 411 411 TYR TYR A . n A 1 19 THR 19 412 412 THR THR A . n A 1 20 LYS 20 413 413 LYS LYS A . n A 1 21 SER 21 414 414 SER SER A . n A 1 22 SER 22 415 415 SER SER A . n A 1 23 HIS 23 416 416 HIS HIS A . n A 1 24 LEU 24 417 417 LEU LEU A . n A 1 25 LYS 25 418 418 LYS LYS A . n A 1 26 ALA 26 419 419 ALA ALA A . n A 1 27 HIS 27 420 420 HIS HIS A . n A 1 28 LEU 28 421 421 LEU LEU A . n A 1 29 ARG 29 422 422 ARG ARG A . n A 1 30 THR 30 423 423 THR THR A . n A 1 31 HIS 31 424 424 HIS HIS A . n A 1 32 THR 32 425 425 THR THR A . n A 1 33 GLY 33 426 426 GLY GLY A . n A 1 34 GLU 34 427 427 GLU GLU A . n A 1 35 LYS 35 428 428 LYS LYS A . n A 1 36 PRO 36 429 429 PRO PRO A . n A 1 37 TYR 37 430 430 TYR TYR A . n A 1 38 HIS 38 431 431 HIS HIS A . n A 1 39 CYS 39 432 432 CYS CYS A . n A 1 40 ASP 40 433 433 ASP ASP A . n A 1 41 TRP 41 434 434 TRP TRP A . n A 1 42 ASP 42 435 435 ASP ASP A . n A 1 43 GLY 43 436 436 GLY GLY A . n A 1 44 CYS 44 437 437 CYS CYS A . n A 1 45 GLY 45 438 438 GLY GLY A . n A 1 46 TRP 46 439 439 TRP TRP A . n A 1 47 LYS 47 440 440 LYS LYS A . n A 1 48 PHE 48 441 441 PHE PHE A . n A 1 49 ALA 49 442 442 ALA ALA A . n A 1 50 ARG 50 443 443 ARG ARG A . n A 1 51 SER 51 444 444 SER SER A . n A 1 52 ASP 52 445 445 ASP ASP A . n A 1 53 GLU 53 446 446 GLU GLU A . n A 1 54 LEU 54 447 447 LEU LEU A . n A 1 55 THR 55 448 448 THR THR A . n A 1 56 ARG 56 449 449 ARG ARG A . n A 1 57 HIS 57 450 450 HIS HIS A . n A 1 58 TYR 58 451 451 TYR TYR A . n A 1 59 ARG 59 452 452 ARG ARG A . n A 1 60 LYS 60 453 453 LYS LYS A . n A 1 61 HIS 61 454 454 HIS HIS A . n A 1 62 THR 62 455 455 THR THR A . n A 1 63 GLY 63 456 456 GLY GLY A . n A 1 64 HIS 64 457 457 HIS HIS A . n A 1 65 ARG 65 458 458 ARG ARG A . n A 1 66 PRO 66 459 459 PRO PRO A . n A 1 67 PHE 67 460 460 PHE PHE A . n A 1 68 GLN 68 461 461 GLN GLN A . n A 1 69 CYS 69 462 462 CYS CYS A . n A 1 70 GLN 70 463 463 GLN GLN A . n A 1 71 LYS 71 464 464 LYS LYS A . n A 1 72 CYS 72 465 465 CYS CYS A . n A 1 73 ASP 73 466 466 ASP ASP A . n A 1 74 ARG 74 467 467 ARG ARG A . n A 1 75 ALA 75 468 468 ALA ALA A . n A 1 76 PHE 76 469 469 PHE PHE A . n A 1 77 SER 77 470 470 SER SER A . n A 1 78 ARG 78 471 471 ARG ARG A . n A 1 79 SER 79 472 472 SER SER A . n A 1 80 ASP 80 473 473 ASP ASP A . n A 1 81 HIS 81 474 474 HIS HIS A . n A 1 82 LEU 82 475 475 LEU LEU A . n A 1 83 ALA 83 476 476 ALA ALA A . n A 1 84 LEU 84 477 477 LEU LEU A . n A 1 85 HIS 85 478 478 HIS HIS A . n A 1 86 MET 86 479 479 MET MET A . n A 1 87 LYS 87 480 480 LYS LYS A . n A 1 88 ARG 88 481 481 ARG ARG A . n A 1 89 HIS 89 482 482 HIS HIS A . n A 1 90 PHE 90 483 483 PHE PHE A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DA 2 2 2 DA DA B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 DG 4 4 4 DG DG B . n B 2 5 DC 5 5 5 DC DC B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DT 7 7 7 DT DT B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DG 9 9 9 DG DG B . n B 2 10 DC 10 10 10 DC DC B . n C 3 1 DG 1 1 1 DG DG C . n C 3 2 DC 2 2 2 DC DC C . n C 3 3 DC 3 3 3 DC DC C . n C 3 4 DA 4 4 4 DA DA C . n C 3 5 DC 5 5 5 DC DC C . n C 3 6 DG 6 6 6 DG DG C . n C 3 7 DC 7 7 7 DC DC C . n C 3 8 DC 8 8 8 DC DC C . n C 3 9 DT 9 9 9 DT DT C . n C 3 10 DC 10 10 10 DC DC C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN 1 1484 1484 ZN ZN A . E 4 ZN 1 1485 1485 ZN ZN A . F 4 ZN 1 1486 1486 ZN ZN A . G 5 HOH 1 2001 2001 HOH HOH A . G 5 HOH 2 2002 2002 HOH HOH A . G 5 HOH 3 2003 2003 HOH HOH A . G 5 HOH 4 2004 2004 HOH HOH A . G 5 HOH 5 2005 2005 HOH HOH A . G 5 HOH 6 2006 2006 HOH HOH A . G 5 HOH 7 2007 2007 HOH HOH A . G 5 HOH 8 2008 2008 HOH HOH A . G 5 HOH 9 2009 2009 HOH HOH A . G 5 HOH 10 2010 2010 HOH HOH A . G 5 HOH 11 2011 2011 HOH HOH A . G 5 HOH 12 2012 2012 HOH HOH A . G 5 HOH 13 2013 2013 HOH HOH A . G 5 HOH 14 2014 2014 HOH HOH A . G 5 HOH 15 2015 2015 HOH HOH A . G 5 HOH 16 2016 2016 HOH HOH A . G 5 HOH 17 2017 2017 HOH HOH A . G 5 HOH 18 2018 2018 HOH HOH A . G 5 HOH 19 2019 2019 HOH HOH A . H 5 HOH 1 2001 2001 HOH HOH B . H 5 HOH 2 2002 2002 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2930 ? 1 MORE -13.0 ? 1 'SSA (A^2)' 8490 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 9 ? A CYS 402 ? 1_555 ZN ? F ZN . ? A ZN 1486 ? 1_555 SG ? A CYS 14 ? A CYS 407 ? 1_555 115.0 ? 2 SG ? A CYS 9 ? A CYS 402 ? 1_555 ZN ? F ZN . ? A ZN 1486 ? 1_555 NE2 ? A HIS 27 ? A HIS 420 ? 1_555 104.0 ? 3 SG ? A CYS 14 ? A CYS 407 ? 1_555 ZN ? F ZN . ? A ZN 1486 ? 1_555 NE2 ? A HIS 27 ? A HIS 420 ? 1_555 111.4 ? 4 SG ? A CYS 9 ? A CYS 402 ? 1_555 ZN ? F ZN . ? A ZN 1486 ? 1_555 NE2 ? A HIS 31 ? A HIS 424 ? 1_555 114.6 ? 5 SG ? A CYS 14 ? A CYS 407 ? 1_555 ZN ? F ZN . ? A ZN 1486 ? 1_555 NE2 ? A HIS 31 ? A HIS 424 ? 1_555 111.2 ? 6 NE2 ? A HIS 27 ? A HIS 420 ? 1_555 ZN ? F ZN . ? A ZN 1486 ? 1_555 NE2 ? A HIS 31 ? A HIS 424 ? 1_555 99.1 ? 7 SG ? A CYS 39 ? A CYS 432 ? 1_555 ZN ? E ZN . ? A ZN 1485 ? 1_555 SG ? A CYS 44 ? A CYS 437 ? 1_555 107.9 ? 8 SG ? A CYS 39 ? A CYS 432 ? 1_555 ZN ? E ZN . ? A ZN 1485 ? 1_555 NE2 ? A HIS 57 ? A HIS 450 ? 1_555 116.4 ? 9 SG ? A CYS 44 ? A CYS 437 ? 1_555 ZN ? E ZN . ? A ZN 1485 ? 1_555 NE2 ? A HIS 57 ? A HIS 450 ? 1_555 105.6 ? 10 SG ? A CYS 39 ? A CYS 432 ? 1_555 ZN ? E ZN . ? A ZN 1485 ? 1_555 NE2 ? A HIS 61 ? A HIS 454 ? 1_555 111.6 ? 11 SG ? A CYS 44 ? A CYS 437 ? 1_555 ZN ? E ZN . ? A ZN 1485 ? 1_555 NE2 ? A HIS 61 ? A HIS 454 ? 1_555 117.1 ? 12 NE2 ? A HIS 57 ? A HIS 450 ? 1_555 ZN ? E ZN . ? A ZN 1485 ? 1_555 NE2 ? A HIS 61 ? A HIS 454 ? 1_555 98.1 ? 13 SG ? A CYS 69 ? A CYS 462 ? 1_555 ZN ? D ZN . ? A ZN 1484 ? 1_555 SG ? A CYS 72 ? A CYS 465 ? 1_555 113.8 ? 14 SG ? A CYS 69 ? A CYS 462 ? 1_555 ZN ? D ZN . ? A ZN 1484 ? 1_555 NE2 ? A HIS 85 ? A HIS 478 ? 1_555 103.0 ? 15 SG ? A CYS 72 ? A CYS 465 ? 1_555 ZN ? D ZN . ? A ZN 1484 ? 1_555 NE2 ? A HIS 85 ? A HIS 478 ? 1_555 112.9 ? 16 SG ? A CYS 69 ? A CYS 462 ? 1_555 ZN ? D ZN . ? A ZN 1484 ? 1_555 NE2 ? A HIS 89 ? A HIS 482 ? 1_555 105.7 ? 17 SG ? A CYS 72 ? A CYS 465 ? 1_555 ZN ? D ZN . ? A ZN 1484 ? 1_555 NE2 ? A HIS 89 ? A HIS 482 ? 1_555 116.3 ? 18 NE2 ? A HIS 85 ? A HIS 478 ? 1_555 ZN ? D ZN . ? A ZN 1484 ? 1_555 NE2 ? A HIS 89 ? A HIS 482 ? 1_555 103.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-07 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-10-05 4 'Structure model' 1 3 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Source and taxonomy' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' Other 10 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_database_status 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.status_code_sf' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 24 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 30 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -25.8500 -13.9380 1.2970 0.0491 0.1102 0.2204 -0.0369 0.0377 -0.0288 5.1011 13.4205 8.0536 -2.2754 2.7793 1.5876 0.0867 0.0200 -0.5257 -0.3828 -0.0583 0.4565 0.0138 -0.5908 -0.0284 'X-RAY DIFFRACTION' 2 ? refined -9.4310 -3.1860 10.5010 0.0724 0.0626 0.3240 -0.0121 -0.0106 -0.0249 4.0513 2.7816 5.1436 0.4908 -1.0259 2.5129 0.1585 -0.2357 -0.0983 0.2245 -0.0161 -0.5396 0.0949 0.2879 -0.1424 'X-RAY DIFFRACTION' 3 ? refined -22.3880 12.3960 21.3560 0.0980 0.1468 0.2251 0.0669 0.0021 -0.0661 5.3605 10.0431 4.1332 -4.9505 -2.9040 4.9919 -0.3096 -0.3794 0.5647 0.3853 0.4469 -0.4012 -0.0477 0.0219 -0.1373 'X-RAY DIFFRACTION' 4 ? refined -24.4770 -1.4490 10.0830 0.0088 0.0243 0.0354 0.0056 0.0027 -0.0085 2.5304 3.1149 10.7215 -0.0782 1.3722 -2.2030 0.0180 -0.0191 -0.1254 0.0003 0.1091 0.0691 0.0542 -0.3137 -0.1272 'X-RAY DIFFRACTION' 5 ? refined -24.6920 -0.0790 10.6440 0.0172 0.0678 0.0463 -0.0104 -0.0137 -0.0228 2.0100 0.7135 12.1590 0.0281 -3.9394 -0.3498 -0.0195 0.0676 0.0110 -0.0228 -0.1466 0.1190 -0.0004 -0.3075 0.1661 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 399 ? ? A 424 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 425 ? ? A 455 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 456 ? ? A 483 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 B 1 ? ? B 10 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 C 1 ? ? C 10 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0066 ? 1 XDS 'data reduction' . ? 2 XDS 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ; HELIX DETERMINATION METHOD: AUTHOR PROVIDED. ; 700 ; SHEET DETERMINATION METHOD: AUTHOR PROVIDED. ; # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" B DG 4 ? ? "C3'" B DG 4 ? ? 1.371 1.419 -0.048 0.006 N 2 1 "O3'" B DC 5 ? ? "C3'" B DC 5 ? ? 1.373 1.419 -0.046 0.006 N 3 1 "O3'" B DG 9 ? ? "C3'" B DG 9 ? ? 1.382 1.419 -0.037 0.006 N 4 1 "O3'" C DG 1 ? ? "C3'" C DG 1 ? ? 1.381 1.419 -0.038 0.006 N 5 1 "O3'" C DC 2 ? ? "C3'" C DC 2 ? ? 1.382 1.419 -0.037 0.006 N 6 1 "O3'" C DC 3 ? ? "C3'" C DC 3 ? ? 1.370 1.419 -0.049 0.006 N 7 1 "O3'" C DA 4 ? ? "C3'" C DA 4 ? ? 1.355 1.419 -0.064 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" B DC 5 ? ? "C2'" B DC 5 ? ? "C1'" B DC 5 ? ? 96.29 102.40 -6.11 0.80 N 2 1 "O4'" B DC 5 ? ? "C1'" B DC 5 ? ? N1 B DC 5 ? ? 111.88 108.30 3.58 0.30 N 3 1 "C3'" B DG 8 ? ? "C2'" B DG 8 ? ? "C1'" B DG 8 ? ? 97.58 102.40 -4.82 0.80 N 4 1 "O4'" C DG 1 ? ? "C1'" C DG 1 ? ? N9 C DG 1 ? ? 103.56 108.00 -4.44 0.70 N 5 1 "C5'" C DC 8 ? ? "C4'" C DC 8 ? ? "C3'" C DC 8 ? ? 123.02 115.70 7.32 1.20 N 6 1 "O4'" C DC 10 ? ? "C1'" C DC 10 ? ? N1 C DC 10 ? ? 103.32 108.00 -4.68 0.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 403 ? ? -91.48 45.30 2 1 ALA A 405 ? ? 58.44 -119.08 3 1 LYS A 413 ? ? -167.01 118.12 4 1 GLU A 427 ? ? -35.55 128.07 5 1 ASP A 435 ? ? -39.21 124.37 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 394 ? A GLY 1 2 1 Y 1 A SER 395 ? A SER 2 3 1 Y 1 A ARG 396 ? A ARG 3 4 1 Y 1 A THR 397 ? A THR 4 5 1 Y 1 A ALA 398 ? A ALA 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 CYS N N N N 57 CYS CA C N R 58 CYS C C N N 59 CYS O O N N 60 CYS CB C N N 61 CYS SG S N N 62 CYS OXT O N N 63 CYS H H N N 64 CYS H2 H N N 65 CYS HA H N N 66 CYS HB2 H N N 67 CYS HB3 H N N 68 CYS HG H N N 69 CYS HXT H N N 70 DA OP3 O N N 71 DA P P N N 72 DA OP1 O N N 73 DA OP2 O N N 74 DA "O5'" O N N 75 DA "C5'" C N N 76 DA "C4'" C N R 77 DA "O4'" O N N 78 DA "C3'" C N S 79 DA "O3'" O N N 80 DA "C2'" C N N 81 DA "C1'" C N R 82 DA N9 N Y N 83 DA C8 C Y N 84 DA N7 N Y N 85 DA C5 C Y N 86 DA C6 C Y N 87 DA N6 N N N 88 DA N1 N Y N 89 DA C2 C Y N 90 DA N3 N Y N 91 DA C4 C Y N 92 DA HOP3 H N N 93 DA HOP2 H N N 94 DA "H5'" H N N 95 DA "H5''" H N N 96 DA "H4'" H N N 97 DA "H3'" H N N 98 DA "HO3'" H N N 99 DA "H2'" H N N 100 DA "H2''" H N N 101 DA "H1'" H N N 102 DA H8 H N N 103 DA H61 H N N 104 DA H62 H N N 105 DA H2 H N N 106 DC OP3 O N N 107 DC P P N N 108 DC OP1 O N N 109 DC OP2 O N N 110 DC "O5'" O N N 111 DC "C5'" C N N 112 DC "C4'" C N R 113 DC "O4'" O N N 114 DC "C3'" C N S 115 DC "O3'" O N N 116 DC "C2'" C N N 117 DC "C1'" C N R 118 DC N1 N N N 119 DC C2 C N N 120 DC O2 O N N 121 DC N3 N N N 122 DC C4 C N N 123 DC N4 N N N 124 DC C5 C N N 125 DC C6 C N N 126 DC HOP3 H N N 127 DC HOP2 H N N 128 DC "H5'" H N N 129 DC "H5''" H N N 130 DC "H4'" H N N 131 DC "H3'" H N N 132 DC "HO3'" H N N 133 DC "H2'" H N N 134 DC "H2''" H N N 135 DC "H1'" H N N 136 DC H41 H N N 137 DC H42 H N N 138 DC H5 H N N 139 DC H6 H N N 140 DG OP3 O N N 141 DG P P N N 142 DG OP1 O N N 143 DG OP2 O N N 144 DG "O5'" O N N 145 DG "C5'" C N N 146 DG "C4'" C N R 147 DG "O4'" O N N 148 DG "C3'" C N S 149 DG "O3'" O N N 150 DG "C2'" C N N 151 DG "C1'" C N R 152 DG N9 N Y N 153 DG C8 C Y N 154 DG N7 N Y N 155 DG C5 C Y N 156 DG C6 C N N 157 DG O6 O N N 158 DG N1 N N N 159 DG C2 C N N 160 DG N2 N N N 161 DG N3 N N N 162 DG C4 C Y N 163 DG HOP3 H N N 164 DG HOP2 H N N 165 DG "H5'" H N N 166 DG "H5''" H N N 167 DG "H4'" H N N 168 DG "H3'" H N N 169 DG "HO3'" H N N 170 DG "H2'" H N N 171 DG "H2''" H N N 172 DG "H1'" H N N 173 DG H8 H N N 174 DG H1 H N N 175 DG H21 H N N 176 DG H22 H N N 177 DT OP3 O N N 178 DT P P N N 179 DT OP1 O N N 180 DT OP2 O N N 181 DT "O5'" O N N 182 DT "C5'" C N N 183 DT "C4'" C N R 184 DT "O4'" O N N 185 DT "C3'" C N S 186 DT "O3'" O N N 187 DT "C2'" C N N 188 DT "C1'" C N R 189 DT N1 N N N 190 DT C2 C N N 191 DT O2 O N N 192 DT N3 N N N 193 DT C4 C N N 194 DT O4 O N N 195 DT C5 C N N 196 DT C7 C N N 197 DT C6 C N N 198 DT HOP3 H N N 199 DT HOP2 H N N 200 DT "H5'" H N N 201 DT "H5''" H N N 202 DT "H4'" H N N 203 DT "H3'" H N N 204 DT "HO3'" H N N 205 DT "H2'" H N N 206 DT "H2''" H N N 207 DT "H1'" H N N 208 DT H3 H N N 209 DT H71 H N N 210 DT H72 H N N 211 DT H73 H N N 212 DT H6 H N N 213 GLN N N N N 214 GLN CA C N S 215 GLN C C N N 216 GLN O O N N 217 GLN CB C N N 218 GLN CG C N N 219 GLN CD C N N 220 GLN OE1 O N N 221 GLN NE2 N N N 222 GLN OXT O N N 223 GLN H H N N 224 GLN H2 H N N 225 GLN HA H N N 226 GLN HB2 H N N 227 GLN HB3 H N N 228 GLN HG2 H N N 229 GLN HG3 H N N 230 GLN HE21 H N N 231 GLN HE22 H N N 232 GLN HXT H N N 233 GLU N N N N 234 GLU CA C N S 235 GLU C C N N 236 GLU O O N N 237 GLU CB C N N 238 GLU CG C N N 239 GLU CD C N N 240 GLU OE1 O N N 241 GLU OE2 O N N 242 GLU OXT O N N 243 GLU H H N N 244 GLU H2 H N N 245 GLU HA H N N 246 GLU HB2 H N N 247 GLU HB3 H N N 248 GLU HG2 H N N 249 GLU HG3 H N N 250 GLU HE2 H N N 251 GLU HXT H N N 252 GLY N N N N 253 GLY CA C N N 254 GLY C C N N 255 GLY O O N N 256 GLY OXT O N N 257 GLY H H N N 258 GLY H2 H N N 259 GLY HA2 H N N 260 GLY HA3 H N N 261 GLY HXT H N N 262 HIS N N N N 263 HIS CA C N S 264 HIS C C N N 265 HIS O O N N 266 HIS CB C N N 267 HIS CG C Y N 268 HIS ND1 N Y N 269 HIS CD2 C Y N 270 HIS CE1 C Y N 271 HIS NE2 N Y N 272 HIS OXT O N N 273 HIS H H N N 274 HIS H2 H N N 275 HIS HA H N N 276 HIS HB2 H N N 277 HIS HB3 H N N 278 HIS HD1 H N N 279 HIS HD2 H N N 280 HIS HE1 H N N 281 HIS HE2 H N N 282 HIS HXT H N N 283 HOH O O N N 284 HOH H1 H N N 285 HOH H2 H N N 286 LEU N N N N 287 LEU CA C N S 288 LEU C C N N 289 LEU O O N N 290 LEU CB C N N 291 LEU CG C N N 292 LEU CD1 C N N 293 LEU CD2 C N N 294 LEU OXT O N N 295 LEU H H N N 296 LEU H2 H N N 297 LEU HA H N N 298 LEU HB2 H N N 299 LEU HB3 H N N 300 LEU HG H N N 301 LEU HD11 H N N 302 LEU HD12 H N N 303 LEU HD13 H N N 304 LEU HD21 H N N 305 LEU HD22 H N N 306 LEU HD23 H N N 307 LEU HXT H N N 308 LYS N N N N 309 LYS CA C N S 310 LYS C C N N 311 LYS O O N N 312 LYS CB C N N 313 LYS CG C N N 314 LYS CD C N N 315 LYS CE C N N 316 LYS NZ N N N 317 LYS OXT O N N 318 LYS H H N N 319 LYS H2 H N N 320 LYS HA H N N 321 LYS HB2 H N N 322 LYS HB3 H N N 323 LYS HG2 H N N 324 LYS HG3 H N N 325 LYS HD2 H N N 326 LYS HD3 H N N 327 LYS HE2 H N N 328 LYS HE3 H N N 329 LYS HZ1 H N N 330 LYS HZ2 H N N 331 LYS HZ3 H N N 332 LYS HXT H N N 333 MET N N N N 334 MET CA C N S 335 MET C C N N 336 MET O O N N 337 MET CB C N N 338 MET CG C N N 339 MET SD S N N 340 MET CE C N N 341 MET OXT O N N 342 MET H H N N 343 MET H2 H N N 344 MET HA H N N 345 MET HB2 H N N 346 MET HB3 H N N 347 MET HG2 H N N 348 MET HG3 H N N 349 MET HE1 H N N 350 MET HE2 H N N 351 MET HE3 H N N 352 MET HXT H N N 353 PHE N N N N 354 PHE CA C N S 355 PHE C C N N 356 PHE O O N N 357 PHE CB C N N 358 PHE CG C Y N 359 PHE CD1 C Y N 360 PHE CD2 C Y N 361 PHE CE1 C Y N 362 PHE CE2 C Y N 363 PHE CZ C Y N 364 PHE OXT O N N 365 PHE H H N N 366 PHE H2 H N N 367 PHE HA H N N 368 PHE HB2 H N N 369 PHE HB3 H N N 370 PHE HD1 H N N 371 PHE HD2 H N N 372 PHE HE1 H N N 373 PHE HE2 H N N 374 PHE HZ H N N 375 PHE HXT H N N 376 PRO N N N N 377 PRO CA C N S 378 PRO C C N N 379 PRO O O N N 380 PRO CB C N N 381 PRO CG C N N 382 PRO CD C N N 383 PRO OXT O N N 384 PRO H H N N 385 PRO HA H N N 386 PRO HB2 H N N 387 PRO HB3 H N N 388 PRO HG2 H N N 389 PRO HG3 H N N 390 PRO HD2 H N N 391 PRO HD3 H N N 392 PRO HXT H N N 393 SER N N N N 394 SER CA C N S 395 SER C C N N 396 SER O O N N 397 SER CB C N N 398 SER OG O N N 399 SER OXT O N N 400 SER H H N N 401 SER H2 H N N 402 SER HA H N N 403 SER HB2 H N N 404 SER HB3 H N N 405 SER HG H N N 406 SER HXT H N N 407 THR N N N N 408 THR CA C N S 409 THR C C N N 410 THR O O N N 411 THR CB C N R 412 THR OG1 O N N 413 THR CG2 C N N 414 THR OXT O N N 415 THR H H N N 416 THR H2 H N N 417 THR HA H N N 418 THR HB H N N 419 THR HG1 H N N 420 THR HG21 H N N 421 THR HG22 H N N 422 THR HG23 H N N 423 THR HXT H N N 424 TRP N N N N 425 TRP CA C N S 426 TRP C C N N 427 TRP O O N N 428 TRP CB C N N 429 TRP CG C Y N 430 TRP CD1 C Y N 431 TRP CD2 C Y N 432 TRP NE1 N Y N 433 TRP CE2 C Y N 434 TRP CE3 C Y N 435 TRP CZ2 C Y N 436 TRP CZ3 C Y N 437 TRP CH2 C Y N 438 TRP OXT O N N 439 TRP H H N N 440 TRP H2 H N N 441 TRP HA H N N 442 TRP HB2 H N N 443 TRP HB3 H N N 444 TRP HD1 H N N 445 TRP HE1 H N N 446 TRP HE3 H N N 447 TRP HZ2 H N N 448 TRP HZ3 H N N 449 TRP HH2 H N N 450 TRP HXT H N N 451 TYR N N N N 452 TYR CA C N S 453 TYR C C N N 454 TYR O O N N 455 TYR CB C N N 456 TYR CG C Y N 457 TYR CD1 C Y N 458 TYR CD2 C Y N 459 TYR CE1 C Y N 460 TYR CE2 C Y N 461 TYR CZ C Y N 462 TYR OH O N N 463 TYR OXT O N N 464 TYR H H N N 465 TYR H2 H N N 466 TYR HA H N N 467 TYR HB2 H N N 468 TYR HB3 H N N 469 TYR HD1 H N N 470 TYR HD2 H N N 471 TYR HE1 H N N 472 TYR HE2 H N N 473 TYR HH H N N 474 TYR HXT H N N 475 ZN ZN ZN N N 476 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 CYS N CA sing N N 54 CYS N H sing N N 55 CYS N H2 sing N N 56 CYS CA C sing N N 57 CYS CA CB sing N N 58 CYS CA HA sing N N 59 CYS C O doub N N 60 CYS C OXT sing N N 61 CYS CB SG sing N N 62 CYS CB HB2 sing N N 63 CYS CB HB3 sing N N 64 CYS SG HG sing N N 65 CYS OXT HXT sing N N 66 DA OP3 P sing N N 67 DA OP3 HOP3 sing N N 68 DA P OP1 doub N N 69 DA P OP2 sing N N 70 DA P "O5'" sing N N 71 DA OP2 HOP2 sing N N 72 DA "O5'" "C5'" sing N N 73 DA "C5'" "C4'" sing N N 74 DA "C5'" "H5'" sing N N 75 DA "C5'" "H5''" sing N N 76 DA "C4'" "O4'" sing N N 77 DA "C4'" "C3'" sing N N 78 DA "C4'" "H4'" sing N N 79 DA "O4'" "C1'" sing N N 80 DA "C3'" "O3'" sing N N 81 DA "C3'" "C2'" sing N N 82 DA "C3'" "H3'" sing N N 83 DA "O3'" "HO3'" sing N N 84 DA "C2'" "C1'" sing N N 85 DA "C2'" "H2'" sing N N 86 DA "C2'" "H2''" sing N N 87 DA "C1'" N9 sing N N 88 DA "C1'" "H1'" sing N N 89 DA N9 C8 sing Y N 90 DA N9 C4 sing Y N 91 DA C8 N7 doub Y N 92 DA C8 H8 sing N N 93 DA N7 C5 sing Y N 94 DA C5 C6 sing Y N 95 DA C5 C4 doub Y N 96 DA C6 N6 sing N N 97 DA C6 N1 doub Y N 98 DA N6 H61 sing N N 99 DA N6 H62 sing N N 100 DA N1 C2 sing Y N 101 DA C2 N3 doub Y N 102 DA C2 H2 sing N N 103 DA N3 C4 sing Y N 104 DC OP3 P sing N N 105 DC OP3 HOP3 sing N N 106 DC P OP1 doub N N 107 DC P OP2 sing N N 108 DC P "O5'" sing N N 109 DC OP2 HOP2 sing N N 110 DC "O5'" "C5'" sing N N 111 DC "C5'" "C4'" sing N N 112 DC "C5'" "H5'" sing N N 113 DC "C5'" "H5''" sing N N 114 DC "C4'" "O4'" sing N N 115 DC "C4'" "C3'" sing N N 116 DC "C4'" "H4'" sing N N 117 DC "O4'" "C1'" sing N N 118 DC "C3'" "O3'" sing N N 119 DC "C3'" "C2'" sing N N 120 DC "C3'" "H3'" sing N N 121 DC "O3'" "HO3'" sing N N 122 DC "C2'" "C1'" sing N N 123 DC "C2'" "H2'" sing N N 124 DC "C2'" "H2''" sing N N 125 DC "C1'" N1 sing N N 126 DC "C1'" "H1'" sing N N 127 DC N1 C2 sing N N 128 DC N1 C6 sing N N 129 DC C2 O2 doub N N 130 DC C2 N3 sing N N 131 DC N3 C4 doub N N 132 DC C4 N4 sing N N 133 DC C4 C5 sing N N 134 DC N4 H41 sing N N 135 DC N4 H42 sing N N 136 DC C5 C6 doub N N 137 DC C5 H5 sing N N 138 DC C6 H6 sing N N 139 DG OP3 P sing N N 140 DG OP3 HOP3 sing N N 141 DG P OP1 doub N N 142 DG P OP2 sing N N 143 DG P "O5'" sing N N 144 DG OP2 HOP2 sing N N 145 DG "O5'" "C5'" sing N N 146 DG "C5'" "C4'" sing N N 147 DG "C5'" "H5'" sing N N 148 DG "C5'" "H5''" sing N N 149 DG "C4'" "O4'" sing N N 150 DG "C4'" "C3'" sing N N 151 DG "C4'" "H4'" sing N N 152 DG "O4'" "C1'" sing N N 153 DG "C3'" "O3'" sing N N 154 DG "C3'" "C2'" sing N N 155 DG "C3'" "H3'" sing N N 156 DG "O3'" "HO3'" sing N N 157 DG "C2'" "C1'" sing N N 158 DG "C2'" "H2'" sing N N 159 DG "C2'" "H2''" sing N N 160 DG "C1'" N9 sing N N 161 DG "C1'" "H1'" sing N N 162 DG N9 C8 sing Y N 163 DG N9 C4 sing Y N 164 DG C8 N7 doub Y N 165 DG C8 H8 sing N N 166 DG N7 C5 sing Y N 167 DG C5 C6 sing N N 168 DG C5 C4 doub Y N 169 DG C6 O6 doub N N 170 DG C6 N1 sing N N 171 DG N1 C2 sing N N 172 DG N1 H1 sing N N 173 DG C2 N2 sing N N 174 DG C2 N3 doub N N 175 DG N2 H21 sing N N 176 DG N2 H22 sing N N 177 DG N3 C4 sing N N 178 DT OP3 P sing N N 179 DT OP3 HOP3 sing N N 180 DT P OP1 doub N N 181 DT P OP2 sing N N 182 DT P "O5'" sing N N 183 DT OP2 HOP2 sing N N 184 DT "O5'" "C5'" sing N N 185 DT "C5'" "C4'" sing N N 186 DT "C5'" "H5'" sing N N 187 DT "C5'" "H5''" sing N N 188 DT "C4'" "O4'" sing N N 189 DT "C4'" "C3'" sing N N 190 DT "C4'" "H4'" sing N N 191 DT "O4'" "C1'" sing N N 192 DT "C3'" "O3'" sing N N 193 DT "C3'" "C2'" sing N N 194 DT "C3'" "H3'" sing N N 195 DT "O3'" "HO3'" sing N N 196 DT "C2'" "C1'" sing N N 197 DT "C2'" "H2'" sing N N 198 DT "C2'" "H2''" sing N N 199 DT "C1'" N1 sing N N 200 DT "C1'" "H1'" sing N N 201 DT N1 C2 sing N N 202 DT N1 C6 sing N N 203 DT C2 O2 doub N N 204 DT C2 N3 sing N N 205 DT N3 C4 sing N N 206 DT N3 H3 sing N N 207 DT C4 O4 doub N N 208 DT C4 C5 sing N N 209 DT C5 C7 sing N N 210 DT C5 C6 doub N N 211 DT C7 H71 sing N N 212 DT C7 H72 sing N N 213 DT C7 H73 sing N N 214 DT C6 H6 sing N N 215 GLN N CA sing N N 216 GLN N H sing N N 217 GLN N H2 sing N N 218 GLN CA C sing N N 219 GLN CA CB sing N N 220 GLN CA HA sing N N 221 GLN C O doub N N 222 GLN C OXT sing N N 223 GLN CB CG sing N N 224 GLN CB HB2 sing N N 225 GLN CB HB3 sing N N 226 GLN CG CD sing N N 227 GLN CG HG2 sing N N 228 GLN CG HG3 sing N N 229 GLN CD OE1 doub N N 230 GLN CD NE2 sing N N 231 GLN NE2 HE21 sing N N 232 GLN NE2 HE22 sing N N 233 GLN OXT HXT sing N N 234 GLU N CA sing N N 235 GLU N H sing N N 236 GLU N H2 sing N N 237 GLU CA C sing N N 238 GLU CA CB sing N N 239 GLU CA HA sing N N 240 GLU C O doub N N 241 GLU C OXT sing N N 242 GLU CB CG sing N N 243 GLU CB HB2 sing N N 244 GLU CB HB3 sing N N 245 GLU CG CD sing N N 246 GLU CG HG2 sing N N 247 GLU CG HG3 sing N N 248 GLU CD OE1 doub N N 249 GLU CD OE2 sing N N 250 GLU OE2 HE2 sing N N 251 GLU OXT HXT sing N N 252 GLY N CA sing N N 253 GLY N H sing N N 254 GLY N H2 sing N N 255 GLY CA C sing N N 256 GLY CA HA2 sing N N 257 GLY CA HA3 sing N N 258 GLY C O doub N N 259 GLY C OXT sing N N 260 GLY OXT HXT sing N N 261 HIS N CA sing N N 262 HIS N H sing N N 263 HIS N H2 sing N N 264 HIS CA C sing N N 265 HIS CA CB sing N N 266 HIS CA HA sing N N 267 HIS C O doub N N 268 HIS C OXT sing N N 269 HIS CB CG sing N N 270 HIS CB HB2 sing N N 271 HIS CB HB3 sing N N 272 HIS CG ND1 sing Y N 273 HIS CG CD2 doub Y N 274 HIS ND1 CE1 doub Y N 275 HIS ND1 HD1 sing N N 276 HIS CD2 NE2 sing Y N 277 HIS CD2 HD2 sing N N 278 HIS CE1 NE2 sing Y N 279 HIS CE1 HE1 sing N N 280 HIS NE2 HE2 sing N N 281 HIS OXT HXT sing N N 282 HOH O H1 sing N N 283 HOH O H2 sing N N 284 LEU N CA sing N N 285 LEU N H sing N N 286 LEU N H2 sing N N 287 LEU CA C sing N N 288 LEU CA CB sing N N 289 LEU CA HA sing N N 290 LEU C O doub N N 291 LEU C OXT sing N N 292 LEU CB CG sing N N 293 LEU CB HB2 sing N N 294 LEU CB HB3 sing N N 295 LEU CG CD1 sing N N 296 LEU CG CD2 sing N N 297 LEU CG HG sing N N 298 LEU CD1 HD11 sing N N 299 LEU CD1 HD12 sing N N 300 LEU CD1 HD13 sing N N 301 LEU CD2 HD21 sing N N 302 LEU CD2 HD22 sing N N 303 LEU CD2 HD23 sing N N 304 LEU OXT HXT sing N N 305 LYS N CA sing N N 306 LYS N H sing N N 307 LYS N H2 sing N N 308 LYS CA C sing N N 309 LYS CA CB sing N N 310 LYS CA HA sing N N 311 LYS C O doub N N 312 LYS C OXT sing N N 313 LYS CB CG sing N N 314 LYS CB HB2 sing N N 315 LYS CB HB3 sing N N 316 LYS CG CD sing N N 317 LYS CG HG2 sing N N 318 LYS CG HG3 sing N N 319 LYS CD CE sing N N 320 LYS CD HD2 sing N N 321 LYS CD HD3 sing N N 322 LYS CE NZ sing N N 323 LYS CE HE2 sing N N 324 LYS CE HE3 sing N N 325 LYS NZ HZ1 sing N N 326 LYS NZ HZ2 sing N N 327 LYS NZ HZ3 sing N N 328 LYS OXT HXT sing N N 329 MET N CA sing N N 330 MET N H sing N N 331 MET N H2 sing N N 332 MET CA C sing N N 333 MET CA CB sing N N 334 MET CA HA sing N N 335 MET C O doub N N 336 MET C OXT sing N N 337 MET CB CG sing N N 338 MET CB HB2 sing N N 339 MET CB HB3 sing N N 340 MET CG SD sing N N 341 MET CG HG2 sing N N 342 MET CG HG3 sing N N 343 MET SD CE sing N N 344 MET CE HE1 sing N N 345 MET CE HE2 sing N N 346 MET CE HE3 sing N N 347 MET OXT HXT sing N N 348 PHE N CA sing N N 349 PHE N H sing N N 350 PHE N H2 sing N N 351 PHE CA C sing N N 352 PHE CA CB sing N N 353 PHE CA HA sing N N 354 PHE C O doub N N 355 PHE C OXT sing N N 356 PHE CB CG sing N N 357 PHE CB HB2 sing N N 358 PHE CB HB3 sing N N 359 PHE CG CD1 doub Y N 360 PHE CG CD2 sing Y N 361 PHE CD1 CE1 sing Y N 362 PHE CD1 HD1 sing N N 363 PHE CD2 CE2 doub Y N 364 PHE CD2 HD2 sing N N 365 PHE CE1 CZ doub Y N 366 PHE CE1 HE1 sing N N 367 PHE CE2 CZ sing Y N 368 PHE CE2 HE2 sing N N 369 PHE CZ HZ sing N N 370 PHE OXT HXT sing N N 371 PRO N CA sing N N 372 PRO N CD sing N N 373 PRO N H sing N N 374 PRO CA C sing N N 375 PRO CA CB sing N N 376 PRO CA HA sing N N 377 PRO C O doub N N 378 PRO C OXT sing N N 379 PRO CB CG sing N N 380 PRO CB HB2 sing N N 381 PRO CB HB3 sing N N 382 PRO CG CD sing N N 383 PRO CG HG2 sing N N 384 PRO CG HG3 sing N N 385 PRO CD HD2 sing N N 386 PRO CD HD3 sing N N 387 PRO OXT HXT sing N N 388 SER N CA sing N N 389 SER N H sing N N 390 SER N H2 sing N N 391 SER CA C sing N N 392 SER CA CB sing N N 393 SER CA HA sing N N 394 SER C O doub N N 395 SER C OXT sing N N 396 SER CB OG sing N N 397 SER CB HB2 sing N N 398 SER CB HB3 sing N N 399 SER OG HG sing N N 400 SER OXT HXT sing N N 401 THR N CA sing N N 402 THR N H sing N N 403 THR N H2 sing N N 404 THR CA C sing N N 405 THR CA CB sing N N 406 THR CA HA sing N N 407 THR C O doub N N 408 THR C OXT sing N N 409 THR CB OG1 sing N N 410 THR CB CG2 sing N N 411 THR CB HB sing N N 412 THR OG1 HG1 sing N N 413 THR CG2 HG21 sing N N 414 THR CG2 HG22 sing N N 415 THR CG2 HG23 sing N N 416 THR OXT HXT sing N N 417 TRP N CA sing N N 418 TRP N H sing N N 419 TRP N H2 sing N N 420 TRP CA C sing N N 421 TRP CA CB sing N N 422 TRP CA HA sing N N 423 TRP C O doub N N 424 TRP C OXT sing N N 425 TRP CB CG sing N N 426 TRP CB HB2 sing N N 427 TRP CB HB3 sing N N 428 TRP CG CD1 doub Y N 429 TRP CG CD2 sing Y N 430 TRP CD1 NE1 sing Y N 431 TRP CD1 HD1 sing N N 432 TRP CD2 CE2 doub Y N 433 TRP CD2 CE3 sing Y N 434 TRP NE1 CE2 sing Y N 435 TRP NE1 HE1 sing N N 436 TRP CE2 CZ2 sing Y N 437 TRP CE3 CZ3 doub Y N 438 TRP CE3 HE3 sing N N 439 TRP CZ2 CH2 doub Y N 440 TRP CZ2 HZ2 sing N N 441 TRP CZ3 CH2 sing Y N 442 TRP CZ3 HZ3 sing N N 443 TRP CH2 HH2 sing N N 444 TRP OXT HXT sing N N 445 TYR N CA sing N N 446 TYR N H sing N N 447 TYR N H2 sing N N 448 TYR CA C sing N N 449 TYR CA CB sing N N 450 TYR CA HA sing N N 451 TYR C O doub N N 452 TYR C OXT sing N N 453 TYR CB CG sing N N 454 TYR CB HB2 sing N N 455 TYR CB HB3 sing N N 456 TYR CG CD1 doub Y N 457 TYR CG CD2 sing Y N 458 TYR CD1 CE1 sing Y N 459 TYR CD1 HD1 sing N N 460 TYR CD2 CE2 doub Y N 461 TYR CD2 HD2 sing N N 462 TYR CE1 CZ doub Y N 463 TYR CE1 HE1 sing N N 464 TYR CE2 CZ sing Y N 465 TYR CE2 HE2 sing N N 466 TYR CZ OH sing N N 467 TYR OH HH sing N N 468 TYR OXT HXT sing N N 469 # _ndb_struct_conf_na.entry_id 2WBU _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 10 1_555 -0.088 0.031 -0.346 -4.745 -10.068 3.374 1 B_DG1:DC10_C B 1 ? C 10 ? 19 1 1 B DA 2 1_555 C DT 9 1_555 0.208 -0.154 -0.301 -1.297 -12.524 -5.130 2 B_DA2:DT9_C B 2 ? C 9 ? 20 1 1 B DG 3 1_555 C DC 8 1_555 -0.101 -0.187 0.378 7.400 -12.125 -0.575 3 B_DG3:DC8_C B 3 ? C 8 ? 19 1 1 B DG 4 1_555 C DC 7 1_555 -0.123 -0.073 -0.343 -7.623 -9.121 -0.216 4 B_DG4:DC7_C B 4 ? C 7 ? 19 1 1 B DC 5 1_555 C DG 6 1_555 -0.137 -0.178 -0.314 0.145 -3.349 1.459 5 B_DC5:DG6_C B 5 ? C 6 ? 19 1 1 B DG 6 1_555 C DC 5 1_555 0.042 -0.185 -0.177 -6.374 -10.771 -3.457 6 B_DG6:DC5_C B 6 ? C 5 ? 19 1 1 B DT 7 1_555 C DA 4 1_555 -0.718 0.093 -0.100 -7.709 -6.904 11.353 7 B_DT7:DA4_C B 7 ? C 4 ? 20 1 1 B DG 8 1_555 C DC 3 1_555 0.074 -0.150 -0.104 5.093 -1.739 -1.315 8 B_DG8:DC3_C B 8 ? C 3 ? 19 1 1 B DG 9 1_555 C DC 2 1_555 0.059 -0.280 -0.065 6.551 -10.925 -4.542 9 B_DG9:DC2_C B 9 ? C 2 ? 19 1 1 B DC 10 1_555 C DG 1 1_555 0.224 -0.098 0.199 -0.651 -9.009 4.951 10 B_DC10:DG1_C B 10 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 10 1_555 B DA 2 1_555 C DT 9 1_555 -0.337 -0.502 3.177 -1.217 6.509 32.746 -1.908 0.393 3.034 11.399 2.131 33.391 1 BB_DG1DA2:DT9DC10_CC B 1 ? C 10 ? B 2 ? C 9 ? 1 B DA 2 1_555 C DT 9 1_555 B DG 3 1_555 C DC 8 1_555 0.029 -0.255 3.051 -5.554 6.285 30.989 -1.507 -0.977 2.896 11.500 10.163 32.077 2 BB_DA2DG3:DC8DT9_CC B 2 ? C 9 ? B 3 ? C 8 ? 1 B DG 3 1_555 C DC 8 1_555 B DG 4 1_555 C DC 7 1_555 0.045 -0.520 3.686 2.807 9.190 36.776 -2.102 0.328 3.456 14.269 -4.358 37.969 3 BB_DG3DG4:DC7DC8_CC B 3 ? C 8 ? B 4 ? C 7 ? 1 B DG 4 1_555 C DC 7 1_555 B DC 5 1_555 C DG 6 1_555 0.838 -0.394 3.076 2.484 -0.126 28.388 -0.772 -1.163 3.138 -0.257 -5.052 28.495 4 BB_DG4DC5:DG6DC7_CC B 4 ? C 7 ? B 5 ? C 6 ? 1 B DC 5 1_555 C DG 6 1_555 B DG 6 1_555 C DC 5 1_555 -1.350 -0.058 3.645 -3.393 7.254 33.886 -1.350 1.672 3.669 12.234 5.722 34.793 5 BB_DC5DG6:DC5DG6_CC B 5 ? C 6 ? B 6 ? C 5 ? 1 B DG 6 1_555 C DC 5 1_555 B DT 7 1_555 C DA 4 1_555 1.686 -0.349 3.249 2.368 3.138 29.541 -1.340 -2.781 3.317 6.119 -4.617 29.796 6 BB_DG6DT7:DA4DC5_CC B 6 ? C 5 ? B 7 ? C 4 ? 1 B DT 7 1_555 C DA 4 1_555 B DG 8 1_555 C DC 3 1_555 -1.081 0.760 3.208 -0.370 7.004 35.227 0.225 1.701 3.304 11.432 0.603 35.897 7 BB_DT7DG8:DC3DA4_CC B 7 ? C 4 ? B 8 ? C 3 ? 1 B DG 8 1_555 C DC 3 1_555 B DG 9 1_555 C DC 2 1_555 -1.153 0.067 3.263 -2.786 5.729 32.371 -0.871 1.551 3.311 10.154 4.938 32.975 8 BB_DG8DG9:DC2DC3_CC B 8 ? C 3 ? B 9 ? C 2 ? 1 B DG 9 1_555 C DC 2 1_555 B DC 10 1_555 C DG 1 1_555 1.207 -0.563 3.452 -1.192 -3.671 36.041 -0.361 -2.118 3.450 -5.913 1.920 36.240 9 BB_DG9DC10:DG1DC2_CC B 9 ? C 2 ? B 10 ? C 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'ZINC ION' ZN 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2WBS _pdbx_initial_refinement_model.details 'PDB ENTRY 2WBS' #