HEADER METAL BINDING PROTEIN 11-MAR-09 2WCE TITLE CALCIUM-FREE (APO) S100A12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN S100-A12; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-92; COMPND 5 SYNONYM: S100 CALCIUM-BINDING PROTEIN A12, CALGRANULIN-C, CGRP, COMPND 6 NEUTROPHIL S100 PROTEIN, CALCIUM-BINDING PROTEIN IN AMNIOTIC FLUID 1, COMPND 7 P6, CAGC, CAAF1, S100A12, CALCITERMIN; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS CALCIUM SIGNALLING, APO, EF-HAND, CALCIUM FREE, S100 PROTEIN, HOST- KEYWDS 2 PARASITE RESPONSE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.V.MOROZ,E.V.BLAGOVA,A.J.WILKINSON,K.S.WILSON,I.B.BRONSTEIN REVDAT 4 13-DEC-23 2WCE 1 REMARK LINK REVDAT 3 13-JUL-11 2WCE 1 VERSN REVDAT 2 11-AUG-09 2WCE 1 JRNL REVDAT 1 23-JUN-09 2WCE 0 JRNL AUTH O.V.MOROZ,E.V.BLAGOVA,A.J.WILKINSON,K.S.WILSON,I.B.BRONSTEIN JRNL TITL THE CRYSTAL STRUCTURES OF HUMAN S100A12 IN APO FORM AND IN JRNL TITL 2 COMPLEX WITH ZINC: NEW INSIGHTS INTO S100A12 JRNL TITL 3 OLIGOMERISATION. JRNL REF J.MOL.BIOL. V. 391 536 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19501594 JRNL DOI 10.1016/J.JMB.2009.06.004 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH O.V.MOROZ,A.A.ANTSON,G.N.MURSHUDOV,N.J.MAITLAND,G.G.DODSON, REMARK 1 AUTH 2 K.S.WILSON,I.SKIBSHOJ,E.M.LUKANIDIN,I.B.BRONSTEIN REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF HUMAN S100A12. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 57 20 2001 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11134923 REMARK 1 DOI 10.1107/S090744490001458X REMARK 1 REFERENCE 2 REMARK 1 AUTH O.V.MOROZ,A.A.ANTSON,S.J.GRIST,N.J.MAITLAND,G.G.DODSON, REMARK 1 AUTH 2 K.S.WILSON,E.LUKANIDIN,I.B.BRONSTEIN REMARK 1 TITL STRUCTURE OF THE HUMAN S100A12-COPPER COMPLEX: IMPLICATIONS REMARK 1 TITL 2 FOR HOST-PARASITE DEFENCE. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 859 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 12777802 REMARK 1 DOI 10.1107/S0907444903004700 REMARK 1 REFERENCE 3 REMARK 1 AUTH O.V.MOROZ,A.A.ANTSON,E.J.DODSON,H.J.BURRELL,S.J.GRIST, REMARK 1 AUTH 2 R.M.LLOYD,N.J.MAITLAND,G.G.DODSON,K.S.WILSON,E.LUKANIDIN, REMARK 1 AUTH 3 I.B.BRONSTEIN REMARK 1 TITL THE STRUCTURE OF S100A12 IN A HEXAMERIC FORM AND ITS REMARK 1 TITL 2 PROPOSED ROLE IN RECEPTOR SIGNALLING. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 58 407 2002 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 11856825 REMARK 1 DOI 10.1107/S0907444901021278 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0082 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1102 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1466 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1422 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : 0.69000 REMARK 3 B33 (A**2) : -1.04000 REMARK 3 B12 (A**2) : 0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.104 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.794 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1511 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 956 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2052 ; 1.368 ; 1.919 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2359 ; 0.956 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 194 ; 5.142 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;40.183 ;25.733 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 261 ;13.623 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 8.180 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 235 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1734 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 296 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 942 ; 0.919 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1519 ; 1.658 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 569 ; 3.200 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 533 ; 4.535 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 90 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7461 13.5840 -1.7811 REMARK 3 T TENSOR REMARK 3 T11: 0.0901 T22: 0.0413 REMARK 3 T33: 0.0837 T12: -0.0072 REMARK 3 T13: 0.0256 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 1.5531 L22: 3.2403 REMARK 3 L33: 3.8964 L12: 0.1402 REMARK 3 L13: 0.1681 L23: 0.6379 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.0781 S13: -0.1985 REMARK 3 S21: 0.1782 S22: -0.0177 S23: 0.1050 REMARK 3 S31: 0.5409 S32: -0.1694 S33: 0.0239 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 90 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3222 30.8886 1.9399 REMARK 3 T TENSOR REMARK 3 T11: 0.0276 T22: 0.0445 REMARK 3 T33: 0.0520 T12: 0.0185 REMARK 3 T13: -0.0031 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.6111 L22: 2.1250 REMARK 3 L33: 3.5097 L12: -1.0701 REMARK 3 L13: -1.1042 L23: 0.5223 REMARK 3 S TENSOR REMARK 3 S11: 0.0396 S12: 0.1432 S13: 0.0456 REMARK 3 S21: -0.0326 S22: 0.0183 S23: 0.1742 REMARK 3 S31: -0.2111 S32: -0.3661 S33: -0.0579 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WCE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1290039022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21533 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 55.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1K9P REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M NA-CITRATE, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.75800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.37694 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.02533 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 38.75800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 22.37694 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.02533 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 38.75800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 22.37694 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.02533 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.75388 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 66.05067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 44.75388 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 66.05067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 44.75388 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.05067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 76 TO MSE REMARK 400 ENGINEERED RESIDUE IN CHAIN B, LEU 76 TO MSE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 GLU A 91 REMARK 465 MSE B -3 REMARK 465 GLY B -2 REMARK 465 GLY B -1 REMARK 465 GLU B 91 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CD CE NZ REMARK 470 LYS A 21 CE NZ REMARK 470 GLN A 34 CD OE1 NE2 REMARK 470 LYS A 45 CD CE NZ REMARK 470 LYS A 48 CE NZ REMARK 470 ASP A 54 CG OD1 OD2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 LYS B 2 CD CE NZ REMARK 470 LYS B 21 CD CE NZ REMARK 470 LYS B 45 CD CE NZ REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 GLU B 55 CG CD OE1 OE2 REMARK 470 GLN B 58 CD OE1 NE2 REMARK 470 LYS B 90 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER A 0 O HOH A 2002 1.99 REMARK 500 CE1 HIS A 89 O HOH A 2111 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2014 DISTANCE = 6.35 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1091 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 18 O REMARK 620 2 LYS A 21 O 100.1 REMARK 620 3 HIS A 23 O 88.6 93.2 REMARK 620 4 THR A 26 O 95.2 164.7 87.7 REMARK 620 5 HOH A2085 O 178.3 80.5 92.9 84.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1091 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 18 O REMARK 620 2 LYS B 21 O 97.2 REMARK 620 3 HIS B 23 O 87.5 93.1 REMARK 620 4 HIS B 23 O 85.7 93.4 1.8 REMARK 620 5 THR B 26 O 96.8 166.0 89.2 89.4 REMARK 620 6 HOH B2086 O 174.1 81.9 98.3 100.1 84.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1091 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1091 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WCB RELATED DB: PDB REMARK 900 S100A12 COMPLEX WITH ZINC IN THE ABSENCE OF CALCIUM REMARK 900 RELATED ID: 1GQM RELATED DB: PDB REMARK 900 THE STRUCTURE OF S100A12 IN A HEXAMERIC FORM AND ITS PROPOSED ROLE REMARK 900 IN RECEPTOR SIGNALLING REMARK 900 RELATED ID: 2WC8 RELATED DB: PDB REMARK 900 S100A12 COMPLEX WITH ZINC IN THE ABSENCE OF CALCIUM REMARK 900 RELATED ID: 1ODB RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF HUMAN S100A12 - COPPER COMPLEX REMARK 900 RELATED ID: 1E8A RELATED DB: PDB REMARK 900 THE THREE-DIMENSIONAL STRUCTURE OF HUMAN S100A12 RELATED ENTRIES REMARK 900 RELATED ID: 2WCF RELATED DB: PDB REMARK 900 CALCIUM-FREE S100A12 REMARK 999 REMARK 999 SEQUENCE REMARK 999 EXTRA FOUR RESIDUES AT N TERMINUS MGGS, L76M SUBSTITUTION DBREF 2WCE A -3 0 PDB 2WCE 2WCE -3 0 DBREF 2WCE A 1 91 UNP P80511 S10AC_HUMAN 2 92 DBREF 2WCE B -3 0 PDB 2WCE 2WCE -3 0 DBREF 2WCE B 1 91 UNP P80511 S10AC_HUMAN 2 92 SEQADV 2WCE MSE A 76 UNP P80511 LEU 76 ENGINEERED MUTATION SEQADV 2WCE MSE B 76 UNP P80511 LEU 76 ENGINEERED MUTATION SEQRES 1 A 95 MSE GLY GLY SER THR LYS LEU GLU GLU HIS LEU GLU GLY SEQRES 2 A 95 ILE VAL ASN ILE PHE HIS GLN TYR SER VAL ARG LYS GLY SEQRES 3 A 95 HIS PHE ASP THR LEU SER LYS GLY GLU LEU LYS GLN LEU SEQRES 4 A 95 LEU THR LYS GLU LEU ALA ASN THR ILE LYS ASN ILE LYS SEQRES 5 A 95 ASP LYS ALA VAL ILE ASP GLU ILE PHE GLN GLY LEU ASP SEQRES 6 A 95 ALA ASN GLN ASP GLU GLN VAL ASP PHE GLN GLU PHE ILE SEQRES 7 A 95 SER MSE VAL ALA ILE ALA LEU LYS ALA ALA HIS TYR HIS SEQRES 8 A 95 THR HIS LYS GLU SEQRES 1 B 95 MSE GLY GLY SER THR LYS LEU GLU GLU HIS LEU GLU GLY SEQRES 2 B 95 ILE VAL ASN ILE PHE HIS GLN TYR SER VAL ARG LYS GLY SEQRES 3 B 95 HIS PHE ASP THR LEU SER LYS GLY GLU LEU LYS GLN LEU SEQRES 4 B 95 LEU THR LYS GLU LEU ALA ASN THR ILE LYS ASN ILE LYS SEQRES 5 B 95 ASP LYS ALA VAL ILE ASP GLU ILE PHE GLN GLY LEU ASP SEQRES 6 B 95 ALA ASN GLN ASP GLU GLN VAL ASP PHE GLN GLU PHE ILE SEQRES 7 B 95 SER MSE VAL ALA ILE ALA LEU LYS ALA ALA HIS TYR HIS SEQRES 8 B 95 THR HIS LYS GLU MODRES 2WCE MSE A 76 MET SELENOMETHIONINE MODRES 2WCE MSE B 76 MET SELENOMETHIONINE HET MSE A 76 8 HET MSE B 76 8 HET NA A1091 1 HET NA B1091 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *225(H2 O) HELIX 1 1 THR A 1 VAL A 19 1 19 HELIX 2 2 LYS A 29 LEU A 40 1 12 HELIX 3 3 LEU A 40 ILE A 47 1 8 HELIX 4 4 LYS A 50 ASN A 63 1 14 HELIX 5 5 ASP A 69 MSE A 76 1 8 HELIX 6 6 ALA A 78 ALA A 84 1 7 HELIX 7 7 THR B 1 VAL B 19 1 19 HELIX 8 8 LYS B 29 LEU B 40 1 12 HELIX 9 9 LEU B 40 ILE B 47 1 8 HELIX 10 10 LYS B 50 ASN B 63 1 14 HELIX 11 11 ASP B 69 MSE B 76 1 8 HELIX 12 12 ALA B 78 ALA B 84 1 7 SHEET 1 AA 2 LEU A 27 SER A 28 0 SHEET 2 AA 2 GLN A 67 VAL A 68 -1 O VAL A 68 N LEU A 27 SHEET 1 BA 2 LEU B 27 SER B 28 0 SHEET 2 BA 2 GLN B 67 VAL B 68 -1 O VAL B 68 N LEU B 27 LINK C ASER A 75 N MSE A 76 1555 1555 1.33 LINK C BSER A 75 N MSE A 76 1555 1555 1.33 LINK C MSE A 76 N VAL A 77 1555 1555 1.33 LINK C SER B 75 N MSE B 76 1555 1555 1.33 LINK C MSE B 76 N VAL B 77 1555 1555 1.33 LINK O SER A 18 NA NA A1091 1555 1555 2.20 LINK O LYS A 21 NA NA A1091 1555 1555 2.30 LINK O HIS A 23 NA NA A1091 1555 1555 2.35 LINK O THR A 26 NA NA A1091 1555 1555 2.31 LINK NA NA A1091 O HOH A2085 1555 1555 2.42 LINK O SER B 18 NA NA B1091 1555 1555 2.27 LINK O LYS B 21 NA NA B1091 1555 1555 2.30 LINK O BHIS B 23 NA NA B1091 1555 1555 2.35 LINK O AHIS B 23 NA NA B1091 1555 1555 2.32 LINK O THR B 26 NA NA B1091 1555 1555 2.24 LINK NA NA B1091 O HOH B2086 1555 1555 2.40 SITE 1 AC1 6 SER B 18 LYS B 21 HIS B 23 THR B 26 SITE 2 AC1 6 HOH B2049 HOH B2086 SITE 1 AC2 6 SER A 18 LYS A 21 HIS A 23 THR A 26 SITE 2 AC2 6 HOH A2052 HOH A2085 CRYST1 77.516 77.516 99.076 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012901 0.007448 0.000000 0.00000 SCALE2 0.000000 0.014896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010093 0.00000