HEADER OXIDOREDUCTASE 29-MAR-09 2WE8 TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RV0376C HOMOLOGUE FROM TITLE 2 MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: XANTHINE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.17.1.4; COMPND 5 OTHER_DETAILS: RESIDUES 4-360 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: MC2 155 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.CHO,B.S.KANG REVDAT 3 13-DEC-23 2WE8 1 REMARK REVDAT 2 13-JUL-11 2WE8 1 VERSN REVDAT 1 07-APR-10 2WE8 0 JRNL AUTH H.J.CHO,B.S.KANG JRNL TITL CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RV0376C JRNL TITL 2 HOMOLOGUE FROM MYCOBACTERIUM SMEGMATIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 41413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2223 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2934 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.3330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5017 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : 0.09000 REMARK 3 B12 (A**2) : -0.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.238 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.211 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.913 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5176 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7049 ; 1.289 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 683 ; 5.850 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;31.387 ;22.201 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 760 ;18.435 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 56 ;21.580 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 824 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3945 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2213 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3497 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 235 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 58 ; 0.189 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.180 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3442 ; 1.709 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5413 ; 2.906 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1915 ; 4.828 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1632 ; 7.056 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 360 REMARK 3 ORIGIN FOR THE GROUP (A): -26.9905 -11.1852 97.5044 REMARK 3 T TENSOR REMARK 3 T11: -0.0600 T22: -0.0607 REMARK 3 T33: -0.0394 T12: -0.0191 REMARK 3 T13: -0.0119 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.3042 L22: 1.5738 REMARK 3 L33: 0.3480 L12: -0.1978 REMARK 3 L13: -0.0625 L23: 0.4257 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.0084 S13: 0.0006 REMARK 3 S21: 0.0500 S22: -0.0459 S23: -0.0064 REMARK 3 S31: 0.0166 S32: 0.0020 S33: 0.0376 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 359 REMARK 3 ORIGIN FOR THE GROUP (A): -29.1355 -3.4363 140.2570 REMARK 3 T TENSOR REMARK 3 T11: -0.0040 T22: 0.0168 REMARK 3 T33: -0.2789 T12: -0.0379 REMARK 3 T13: 0.0089 T23: 0.0840 REMARK 3 L TENSOR REMARK 3 L11: 0.5886 L22: 1.9299 REMARK 3 L33: 2.3536 L12: -0.3231 REMARK 3 L13: -0.3848 L23: 0.9643 REMARK 3 S TENSOR REMARK 3 S11: 0.0524 S12: -0.0873 S13: 0.0129 REMARK 3 S21: 0.0903 S22: 0.1102 S23: 0.0875 REMARK 3 S31: -0.1144 S32: -0.2463 S33: -0.1626 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY REMARK 4 REMARK 4 2WE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-09. REMARK 100 THE DEPOSITION ID IS D_1290039257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 294 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51359 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 18.70 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2WE7 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRATE PH 4.8, 17% PEG 8000, REMARK 280 0.2 M AMMONIUM ACETATE AND 4% ETHANOL BY MICRO-SEEDING., PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 158.33450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 158.33450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 158.33450 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 158.33450 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 158.33450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 158.33450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 158.33450 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 316.66900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2147 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 SER A 84 REMARK 465 ASP A 85 REMARK 465 ASP A 86 REMARK 465 ASP A 87 REMARK 465 ALA A 88 REMARK 465 PHE A 89 REMARK 465 GLU A 90 REMARK 465 VAL A 91 REMARK 465 GLY A 92 REMARK 465 LEU A 93 REMARK 465 THR A 94 REMARK 465 CYS A 95 REMARK 465 GLY A 361 REMARK 465 GLU A 362 REMARK 465 GLY A 363 REMARK 465 ARG A 364 REMARK 465 PRO A 365 REMARK 465 LEU A 366 REMARK 465 ALA A 367 REMARK 465 GLU A 368 REMARK 465 THR A 369 REMARK 465 GLY A 370 REMARK 465 GLY A 371 REMARK 465 ARG A 372 REMARK 465 ILE A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 GLU A 376 REMARK 465 LEU A 377 REMARK 465 GLY A 378 REMARK 465 GLU A 379 REMARK 465 HIS A 380 REMARK 465 GLU A 381 REMARK 465 SER A 382 REMARK 465 ALA A 383 REMARK 465 PRO A 384 REMARK 465 ALA A 385 REMARK 465 SER A 386 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 GLY B 3 REMARK 465 GLY B 4 REMARK 465 PHE B 31 REMARK 465 ARG B 32 REMARK 465 SER B 33 REMARK 465 ALA B 34 REMARK 465 PRO B 35 REMARK 465 ARG B 36 REMARK 465 GLY B 82 REMARK 465 VAL B 83 REMARK 465 SER B 84 REMARK 465 ASP B 85 REMARK 465 ASP B 86 REMARK 465 ASP B 87 REMARK 465 ALA B 88 REMARK 465 PHE B 89 REMARK 465 GLU B 90 REMARK 465 VAL B 91 REMARK 465 GLY B 92 REMARK 465 LEU B 93 REMARK 465 THR B 94 REMARK 465 CYS B 95 REMARK 465 GLY B 360 REMARK 465 GLY B 361 REMARK 465 GLU B 362 REMARK 465 GLY B 363 REMARK 465 ARG B 364 REMARK 465 PRO B 365 REMARK 465 LEU B 366 REMARK 465 ALA B 367 REMARK 465 GLU B 368 REMARK 465 THR B 369 REMARK 465 GLY B 370 REMARK 465 GLY B 371 REMARK 465 ARG B 372 REMARK 465 ILE B 373 REMARK 465 HIS B 374 REMARK 465 HIS B 375 REMARK 465 GLU B 376 REMARK 465 LEU B 377 REMARK 465 GLY B 378 REMARK 465 GLU B 379 REMARK 465 HIS B 380 REMARK 465 GLU B 381 REMARK 465 SER B 382 REMARK 465 ALA B 383 REMARK 465 PRO B 384 REMARK 465 ALA B 385 REMARK 465 SER B 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 190 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 307 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 317 CG CD1 CD2 REMARK 470 ARG B 341 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 270 -168.59 -124.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 296 ASP A 297 -145.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1364 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1365 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1366 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1367 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1368 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1370 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WE7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RV0376C HOMOLOGUE REMARK 900 FROM MYCOBACTERIUM SMEGMATIS DBREF 2WE8 A 1 386 UNP A0QQG1 A0QQG1_MYCS2 1 386 DBREF 2WE8 B 1 386 UNP A0QQG1 A0QQG1_MYCS2 1 386 SEQRES 1 A 386 MET LEU GLY GLY VAL ARG ASP VAL LEU GLY THR LEU SER SEQRES 2 A 386 ALA VAL TRP GLU SER GLY GLY THR ALA GLY VAL GLY THR SEQRES 3 A 386 VAL VAL ARG THR PHE ARG SER ALA PRO ARG PRO ALA GLY SEQRES 4 A 386 ALA SER MET VAL VAL ALA PRO ASP GLY THR VAL SER GLY SEQRES 5 A 386 SER VAL SER GLY GLY CYS VAL GLU GLY ALA VAL TYR ASP SEQRES 6 A 386 LEU ALA THR GLU VAL VAL ALA THR GLY THR PRO VAL LEU SEQRES 7 A 386 GLN ARG TYR GLY VAL SER ASP ASP ASP ALA PHE GLU VAL SEQRES 8 A 386 GLY LEU THR CYS GLY GLY ILE LEU ASP VAL PHE VAL GLU SEQRES 9 A 386 PRO VAL SER GLN LYS THR PHE PRO GLN LEU GLY ALA ILE SEQRES 10 A 386 ARG ASP ASP ILE GLU ALA GLN ARG PRO VAL ALA VAL ALA SEQRES 11 A 386 THR VAL ILE THR HIS PRO ASP ALA GLN TRP ILE GLY ARG SEQRES 12 A 386 ARG LEU VAL VAL HIS THR ASP GLU VAL ALA GLY SER LEU SEQRES 13 A 386 GLY SER SER ARG ALA ASP ALA ALA VAL THR ASP ASP ALA SEQRES 14 A 386 ARG GLY LEU LEU ALA ALA GLY ARG SER GLU VAL LEU THR SEQRES 15 A 386 TYR GLY PRO ASP GLY GLN ARG ARG GLY GLU GLY MET GLU SEQRES 16 A 386 VAL PHE VAL SER SER TYR ALA PRO ARG PRO ARG MET LEU SEQRES 17 A 386 VAL PHE GLY ALA ILE ASP PHE ALA ALA ALA VAL ALA GLN SEQRES 18 A 386 GLN GLY ALA PHE LEU GLY TYR ARG VAL THR VAL CYS ASP SEQRES 19 A 386 ALA ARG PRO VAL PHE ALA THR THR ALA ARG PHE PRO THR SEQRES 20 A 386 ALA ASP GLU VAL VAL VAL ASP TRP PRO HIS ARG TYR LEU SEQRES 21 A 386 ALA ALA GLN ALA GLU ALA GLY ALA ILE ASP ALA ARG THR SEQRES 22 A 386 VAL VAL CYS VAL LEU THR HIS ASP PRO LYS PHE ASP VAL SEQRES 23 A 386 PRO LEU LEU GLU VAL ALA LEU ARG LEU PRO ASP ILE ALA SEQRES 24 A 386 TYR ILE GLY ALA MET GLY SER ARG ARG THR HIS GLU ASP SEQRES 25 A 386 ARG LEU ALA ARG LEU ARG GLU ALA GLY LEU THR GLU GLU SEQRES 26 A 386 GLU LEU ALA ARG LEU SER SER PRO ILE GLY LEU ASP LEU SEQRES 27 A 386 GLY GLY ARG THR PRO GLU GLU THR ALA VAL SER ILE ALA SEQRES 28 A 386 ALA GLU ILE ILE ALA LYS ARG TRP GLY GLY GLU GLY ARG SEQRES 29 A 386 PRO LEU ALA GLU THR GLY GLY ARG ILE HIS HIS GLU LEU SEQRES 30 A 386 GLY GLU HIS GLU SER ALA PRO ALA SER SEQRES 1 B 386 MET LEU GLY GLY VAL ARG ASP VAL LEU GLY THR LEU SER SEQRES 2 B 386 ALA VAL TRP GLU SER GLY GLY THR ALA GLY VAL GLY THR SEQRES 3 B 386 VAL VAL ARG THR PHE ARG SER ALA PRO ARG PRO ALA GLY SEQRES 4 B 386 ALA SER MET VAL VAL ALA PRO ASP GLY THR VAL SER GLY SEQRES 5 B 386 SER VAL SER GLY GLY CYS VAL GLU GLY ALA VAL TYR ASP SEQRES 6 B 386 LEU ALA THR GLU VAL VAL ALA THR GLY THR PRO VAL LEU SEQRES 7 B 386 GLN ARG TYR GLY VAL SER ASP ASP ASP ALA PHE GLU VAL SEQRES 8 B 386 GLY LEU THR CYS GLY GLY ILE LEU ASP VAL PHE VAL GLU SEQRES 9 B 386 PRO VAL SER GLN LYS THR PHE PRO GLN LEU GLY ALA ILE SEQRES 10 B 386 ARG ASP ASP ILE GLU ALA GLN ARG PRO VAL ALA VAL ALA SEQRES 11 B 386 THR VAL ILE THR HIS PRO ASP ALA GLN TRP ILE GLY ARG SEQRES 12 B 386 ARG LEU VAL VAL HIS THR ASP GLU VAL ALA GLY SER LEU SEQRES 13 B 386 GLY SER SER ARG ALA ASP ALA ALA VAL THR ASP ASP ALA SEQRES 14 B 386 ARG GLY LEU LEU ALA ALA GLY ARG SER GLU VAL LEU THR SEQRES 15 B 386 TYR GLY PRO ASP GLY GLN ARG ARG GLY GLU GLY MET GLU SEQRES 16 B 386 VAL PHE VAL SER SER TYR ALA PRO ARG PRO ARG MET LEU SEQRES 17 B 386 VAL PHE GLY ALA ILE ASP PHE ALA ALA ALA VAL ALA GLN SEQRES 18 B 386 GLN GLY ALA PHE LEU GLY TYR ARG VAL THR VAL CYS ASP SEQRES 19 B 386 ALA ARG PRO VAL PHE ALA THR THR ALA ARG PHE PRO THR SEQRES 20 B 386 ALA ASP GLU VAL VAL VAL ASP TRP PRO HIS ARG TYR LEU SEQRES 21 B 386 ALA ALA GLN ALA GLU ALA GLY ALA ILE ASP ALA ARG THR SEQRES 22 B 386 VAL VAL CYS VAL LEU THR HIS ASP PRO LYS PHE ASP VAL SEQRES 23 B 386 PRO LEU LEU GLU VAL ALA LEU ARG LEU PRO ASP ILE ALA SEQRES 24 B 386 TYR ILE GLY ALA MET GLY SER ARG ARG THR HIS GLU ASP SEQRES 25 B 386 ARG LEU ALA ARG LEU ARG GLU ALA GLY LEU THR GLU GLU SEQRES 26 B 386 GLU LEU ALA ARG LEU SER SER PRO ILE GLY LEU ASP LEU SEQRES 27 B 386 GLY GLY ARG THR PRO GLU GLU THR ALA VAL SER ILE ALA SEQRES 28 B 386 ALA GLU ILE ILE ALA LYS ARG TRP GLY GLY GLU GLY ARG SEQRES 29 B 386 PRO LEU ALA GLU THR GLY GLY ARG ILE HIS HIS GLU LEU SEQRES 30 B 386 GLY GLU HIS GLU SER ALA PRO ALA SER HET GOL A1361 6 HET GOL A1362 6 HET GOL A1363 6 HET GOL A1364 6 HET GOL A1365 6 HET GOL A1366 6 HET GOL A1367 6 HET ACT A1368 4 HET ACT A1369 4 HET ACT A1370 4 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 7(C3 H8 O3) FORMUL 10 ACT 3(C2 H3 O2 1-) FORMUL 13 HOH *199(H2 O) HELIX 1 1 GLY A 4 ASP A 7 5 4 HELIX 2 2 VAL A 8 GLY A 19 1 12 HELIX 3 3 VAL A 59 GLY A 74 1 16 HELIX 4 4 GLN A 113 GLN A 124 1 12 HELIX 5 5 ASP A 137 ILE A 141 5 5 HELIX 6 6 SER A 158 GLY A 176 1 19 HELIX 7 7 ASP A 214 LEU A 226 1 13 HELIX 8 8 TRP A 255 GLY A 267 1 13 HELIX 9 9 ASP A 281 LEU A 293 1 13 HELIX 10 10 SER A 306 ALA A 320 1 15 HELIX 11 11 THR A 323 ALA A 328 1 6 HELIX 12 12 THR A 342 TRP A 359 1 18 HELIX 13 13 VAL B 8 GLY B 19 1 12 HELIX 14 14 VAL B 59 GLY B 74 1 16 HELIX 15 15 GLN B 113 ALA B 123 1 11 HELIX 16 16 SER B 158 ALA B 175 1 18 HELIX 17 17 PHE B 215 LEU B 226 1 12 HELIX 18 18 TRP B 255 ALA B 266 1 12 HELIX 19 19 PHE B 284 LEU B 293 1 10 HELIX 20 20 SER B 306 ALA B 320 1 15 HELIX 21 21 THR B 323 ALA B 328 1 6 HELIX 22 22 THR B 342 TRP B 359 1 18 SHEET 1 AA 5 VAL A 50 GLY A 52 0 SHEET 2 AA 5 SER A 41 VAL A 44 -1 O VAL A 43 N SER A 51 SHEET 3 AA 5 ALA A 22 PHE A 31 -1 O GLY A 23 N VAL A 44 SHEET 4 AA 5 ILE A 98 VAL A 106 -1 O ILE A 98 N PHE A 31 SHEET 5 AA 5 VAL A 77 GLY A 82 -1 O VAL A 77 N VAL A 103 SHEET 1 AB10 GLU A 179 TYR A 183 0 SHEET 2 AB10 MET A 194 TYR A 201 -1 O MET A 194 N TYR A 183 SHEET 3 AB10 VAL A 127 THR A 134 -1 O VAL A 127 N TYR A 201 SHEET 4 AB10 ARG A 144 VAL A 147 -1 O LEU A 145 N ALA A 130 SHEET 5 AB10 GLU A 151 GLY A 154 -1 O ALA A 153 N VAL A 146 SHEET 6 AB10 GLU B 151 ALA B 153 -1 O VAL B 152 N VAL A 152 SHEET 7 AB10 ARG B 144 HIS B 148 -1 O VAL B 146 N ALA B 153 SHEET 8 AB10 VAL B 127 THR B 134 -1 O ALA B 128 N VAL B 147 SHEET 9 AB10 MET B 194 TYR B 201 -1 O GLU B 195 N ILE B 133 SHEET 10 AB10 GLU B 179 TYR B 183 -1 O GLU B 179 N VAL B 198 SHEET 1 AC 5 GLU A 250 VAL A 253 0 SHEET 2 AC 5 ARG A 229 ASP A 234 1 O VAL A 230 N GLU A 250 SHEET 3 AC 5 ARG A 206 PHE A 210 1 O MET A 207 N THR A 231 SHEET 4 AC 5 VAL A 274 VAL A 277 1 O VAL A 274 N LEU A 208 SHEET 5 AC 5 TYR A 300 ALA A 303 1 O TYR A 300 N VAL A 275 SHEET 1 BA 5 VAL B 50 SER B 51 0 SHEET 2 BA 5 SER B 41 VAL B 44 -1 O VAL B 43 N SER B 51 SHEET 3 BA 5 ALA B 22 ARG B 29 -1 O GLY B 23 N VAL B 44 SHEET 4 BA 5 LEU B 99 VAL B 106 -1 O ASP B 100 N VAL B 28 SHEET 5 BA 5 VAL B 77 TYR B 81 -1 O VAL B 77 N VAL B 103 SHEET 1 BB 6 GLU B 250 VAL B 253 0 SHEET 2 BB 6 ARG B 229 ASP B 234 1 O VAL B 230 N GLU B 250 SHEET 3 BB 6 ARG B 206 PHE B 210 1 O MET B 207 N THR B 231 SHEET 4 BB 6 VAL B 274 VAL B 277 1 O VAL B 274 N LEU B 208 SHEET 5 BB 6 TYR B 300 ALA B 303 1 O TYR B 300 N VAL B 275 SHEET 6 BB 6 LEU B 330 SER B 331 1 O SER B 331 N ALA B 303 CISPEP 1 SER A 332 PRO A 333 0 -8.03 CISPEP 2 SER B 332 PRO B 333 0 -5.87 SITE 1 AC1 7 GLY A 61 TYR A 64 ASP A 65 TRP A 255 SITE 2 AC1 7 LYS A 283 GOL A1366 HOH A2038 SITE 1 AC2 5 PRO A 333 GLY A 335 ASP A 337 HOH A2180 SITE 2 AC2 5 HOH A2181 SITE 1 AC3 3 PRO A 37 PRO A 343 GOL A1364 SITE 1 AC4 4 PHE A 215 THR A 346 GOL A1363 HOH A2018 SITE 1 AC5 4 TYR A 64 THR A 68 TRP A 255 ARG A 258 SITE 1 AC6 5 GLU A 60 TYR A 64 ALA A 235 PRO A 237 SITE 2 AC6 5 GOL A1361 SITE 1 AC7 2 ALA A 248 ASP A 249 SITE 1 AC8 4 HIS A 310 LEU A 327 LEU A 330 SER A 332 SITE 1 AC9 2 ASP A 337 TRP A 359 SITE 1 BC1 6 ALA A 217 GLN A 221 PHE A 245 PRO A 246 SITE 2 BC1 6 THR A 247 HOH A2114 CRYST1 101.208 101.208 316.669 90.00 90.00 120.00 P 63 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009881 0.005705 0.000000 0.00000 SCALE2 0.000000 0.011409 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003158 0.00000