HEADER LIPID TRANSPORT 02-APR-09 2WEW TITLE CRYSTAL STRUCTURE OF HUMAN APOM IN COMPLEX WITH MYRISTIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: APOLIPOPROTEIN M; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 22-188; COMPND 5 SYNONYM: PROTEIN G3A, APO-M, APOM; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS LIPID TRANSPORT, LIGAND-BINDING SPECIFICITY, GLYCOPROTEIN, MYRISTIC KEYWDS 2 ACID, HDL, LIPOCALIN, TRANSPORT, LIPOPROTEINS EXPDTA X-RAY DIFFRACTION AUTHOR M.SEVVANA,J.AHNSTROM,C.EGERER-SIEBER,B.DAHLBACK,Y.A.MULLER REVDAT 3 13-NOV-24 2WEW 1 REMARK REVDAT 2 27-OCT-09 2WEW 1 JRNL REVDAT 1 15-SEP-09 2WEW 0 JRNL AUTH M.SEVVANA,J.AHNSTROM,C.EGERER-SIEBER,H.A.LANGE,B.DAHLBACK, JRNL AUTH 2 Y.A.MULLER JRNL TITL SERENDIPITOUS FATTY ACID BINDING REVEALS THE STRUCTURAL JRNL TITL 2 DETERMINANTS FOR LIGAND RECOGNITION IN APOLIPOPROTEIN M. JRNL REF J.MOL.BIOL. V. 393 920 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19733574 JRNL DOI 10.1016/J.JMB.2009.08.071 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 13253 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 696 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 870 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1333 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.49000 REMARK 3 B22 (A**2) : -1.49000 REMARK 3 B33 (A**2) : 2.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.183 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.076 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1408 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1906 ; 1.610 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 175 ; 7.283 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 63 ;36.891 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 235 ;15.319 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.361 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 203 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1076 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 525 ; 0.234 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 921 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 61 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 51 ; 0.216 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.259 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 900 ; 0.913 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1404 ; 1.456 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 581 ; 2.347 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 502 ; 3.297 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 35 REMARK 3 ORIGIN FOR THE GROUP (A): 25.1203 -10.7694 25.4068 REMARK 3 T TENSOR REMARK 3 T11: 0.1601 T22: 0.1990 REMARK 3 T33: 0.1981 T12: 0.1317 REMARK 3 T13: 0.0038 T23: -0.1469 REMARK 3 L TENSOR REMARK 3 L11: 14.3811 L22: 1.1588 REMARK 3 L33: 2.3956 L12: 3.7230 REMARK 3 L13: 3.0243 L23: 1.0804 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: 0.9736 S13: -1.2395 REMARK 3 S21: 0.1308 S22: 0.1326 S23: -0.3417 REMARK 3 S31: 0.2504 S32: 0.3611 S33: -0.1035 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 36 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): 10.6641 2.0583 27.4671 REMARK 3 T TENSOR REMARK 3 T11: 0.1810 T22: 0.1276 REMARK 3 T33: 0.0748 T12: 0.0533 REMARK 3 T13: 0.0319 T23: 0.0313 REMARK 3 L TENSOR REMARK 3 L11: 3.5212 L22: 2.5554 REMARK 3 L33: 0.1594 L12: 0.8356 REMARK 3 L13: -0.4132 L23: 0.0663 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: 0.3089 S13: 0.1430 REMARK 3 S21: -0.4975 S22: -0.0257 S23: -0.1967 REMARK 3 S31: 0.0043 S32: -0.0401 S33: 0.0545 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3081 7.1227 27.4722 REMARK 3 T TENSOR REMARK 3 T11: 0.1657 T22: 0.0921 REMARK 3 T33: 0.0213 T12: 0.0594 REMARK 3 T13: -0.0311 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 3.1055 L22: 7.9009 REMARK 3 L33: 3.1367 L12: 1.2285 REMARK 3 L13: 1.2423 L23: 3.2235 REMARK 3 S TENSOR REMARK 3 S11: 0.0369 S12: 0.4086 S13: 0.0589 REMARK 3 S21: -0.5986 S22: 0.0427 S23: -0.1069 REMARK 3 S31: -0.1127 S32: -0.0895 S33: -0.0796 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 93 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6910 4.3081 21.1539 REMARK 3 T TENSOR REMARK 3 T11: 0.2599 T22: 0.1368 REMARK 3 T33: -0.0045 T12: 0.0782 REMARK 3 T13: -0.0256 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.2237 L22: 15.3823 REMARK 3 L33: 7.0230 L12: -1.8654 REMARK 3 L13: -1.3236 L23: 9.9895 REMARK 3 S TENSOR REMARK 3 S11: 0.0675 S12: 0.3682 S13: 0.1971 REMARK 3 S21: -1.0107 S22: 0.0088 S23: -0.1070 REMARK 3 S31: -0.5247 S32: 0.0011 S33: -0.0764 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): 12.1816 -0.7220 19.4478 REMARK 3 T TENSOR REMARK 3 T11: 0.1355 T22: 0.1712 REMARK 3 T33: -0.0077 T12: 0.0563 REMARK 3 T13: 0.0422 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 8.9729 L22: 3.8003 REMARK 3 L33: 13.0842 L12: -0.7151 REMARK 3 L13: 0.8641 L23: 1.1080 REMARK 3 S TENSOR REMARK 3 S11: 0.1355 S12: 1.1055 S13: 0.2230 REMARK 3 S21: -0.7249 S22: -0.0370 S23: -0.0366 REMARK 3 S31: -0.6148 S32: 0.5960 S33: -0.0985 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7982 2.2439 31.1834 REMARK 3 T TENSOR REMARK 3 T11: 0.0577 T22: 0.0519 REMARK 3 T33: 0.1393 T12: 0.0469 REMARK 3 T13: 0.0213 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 5.7753 L22: 1.7331 REMARK 3 L33: 3.5526 L12: -0.4032 REMARK 3 L13: -1.1549 L23: 0.7705 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: 0.1653 S13: 0.2799 REMARK 3 S21: -0.1959 S22: 0.0287 S23: -0.3776 REMARK 3 S31: -0.0685 S32: 0.1670 S33: -0.0370 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5313 9.5371 33.9785 REMARK 3 T TENSOR REMARK 3 T11: 0.0590 T22: -0.0115 REMARK 3 T33: 0.1074 T12: 0.0064 REMARK 3 T13: -0.0125 T23: 0.0608 REMARK 3 L TENSOR REMARK 3 L11: 5.4258 L22: 3.8198 REMARK 3 L33: 3.8980 L12: -3.3978 REMARK 3 L13: -1.7911 L23: 2.4646 REMARK 3 S TENSOR REMARK 3 S11: 0.0377 S12: -0.0748 S13: 0.4924 REMARK 3 S21: -0.0419 S22: 0.0374 S23: -0.2586 REMARK 3 S31: -0.0718 S32: 0.0867 S33: -0.0751 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-APR-09. REMARK 100 THE DEPOSITION ID IS D_1290039331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONICS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13952 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.060 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXCDE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ABOUT 1-2 MICROL OF PROTEIN (10-16 REMARK 280 MG/ML IN 20 MM TRIS-HCL, PH 7.2) WERE MIXED WITH 1-2 MICROL OF REMARK 280 30 % PEG1500 (W/V, IN DEIONISED WATER) AND EQUILIBRATED AGAINST REMARK 280 700 MICROL OF RESERVOIR SOLUTION CONTAINING 30 % PEG1500. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.33500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 24.97000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 24.97000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 108.50250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 24.97000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 24.97000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.16750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 24.97000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 24.97000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 108.50250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 24.97000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 24.97000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.16750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.33500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 ASN A 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 48 O HOH A 2018 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 21 17.20 -146.60 REMARK 500 ASP A 35 4.98 91.32 REMARK 500 MET A 80 57.88 -104.90 REMARK 500 GLU A 106 118.43 -39.55 REMARK 500 LEU A 185 -65.92 -122.64 REMARK 500 SER A 186 131.44 96.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 18 HIS A 19 -148.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYR A 1188 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1189 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WEX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN APOM IN COMPLEX WITH GLYCEROL 1- REMARK 900 MYRISTIC ACID REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 22-188 WITHOUT SIGNAL PEPTIDE HAVE BEEN CLONED DBREF 2WEW A 17 21 PDB 2WEW 2WEW 17 21 DBREF 2WEW A 22 188 UNP O95445 APOM_HUMAN 22 188 SEQRES 1 A 172 GLY SER HIS MET ASN GLN CYS PRO GLU HIS SER GLN LEU SEQRES 2 A 172 THR THR LEU GLY VAL ASP GLY LYS GLU PHE PRO GLU VAL SEQRES 3 A 172 HIS LEU GLY GLN TRP TYR PHE ILE ALA GLY ALA ALA PRO SEQRES 4 A 172 THR LYS GLU GLU LEU ALA THR PHE ASP PRO VAL ASP ASN SEQRES 5 A 172 ILE VAL PHE ASN MET ALA ALA GLY SER ALA PRO MET GLN SEQRES 6 A 172 LEU HIS LEU ARG ALA THR ILE ARG MET LYS ASP GLY LEU SEQRES 7 A 172 CYS VAL PRO ARG LYS TRP ILE TYR HIS LEU THR GLU GLY SEQRES 8 A 172 SER THR ASP LEU ARG THR GLU GLY ARG PRO ASP MET LYS SEQRES 9 A 172 THR GLU LEU PHE SER SER SER CYS PRO GLY GLY ILE MET SEQRES 10 A 172 LEU ASN GLU THR GLY GLN GLY TYR GLN ARG PHE LEU LEU SEQRES 11 A 172 TYR ASN ARG SER PRO HIS PRO PRO GLU LYS CYS VAL GLU SEQRES 12 A 172 GLU PHE LYS SER LEU THR SER CYS LEU ASP SER LYS ALA SEQRES 13 A 172 PHE LEU LEU THR PRO ARG ASN GLN GLU ALA CYS GLU LEU SEQRES 14 A 172 SER ASN ASN HET MYR A1188 16 HET EDO A1189 4 HETNAM MYR MYRISTIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MYR C14 H28 O2 FORMUL 3 EDO C2 H6 O2 FORMUL 4 HOH *83(H2 O) HELIX 1 1 ASP A 35 GLU A 38 5 4 HELIX 2 2 PRO A 40 HIS A 43 5 4 HELIX 3 3 LYS A 57 ASP A 64 5 8 HELIX 4 4 GLU A 155 LEU A 168 1 14 SHEET 1 AA 8 ARG A 112 THR A 113 0 SHEET 2 AA 8 CYS A 95 HIS A 103 -1 O HIS A 103 N ARG A 112 SHEET 3 AA 8 GLN A 81 MET A 90 -1 O LEU A 82 N TYR A 102 SHEET 4 AA 8 VAL A 66 ALA A 75 -1 N ASP A 67 O ARG A 89 SHEET 5 AA 8 GLY A 45 ALA A 54 -1 O GLY A 45 N MET A 73 SHEET 6 AA 8 TYR A 141 ASN A 148 -1 O PHE A 144 N ALA A 53 SHEET 7 AA 8 GLY A 131 GLY A 138 -1 O ILE A 132 N TYR A 147 SHEET 8 AA 8 LYS A 120 PHE A 124 -1 O LYS A 120 N THR A 137 SHEET 1 AB 6 ARG A 112 THR A 113 0 SHEET 2 AB 6 CYS A 95 HIS A 103 -1 O HIS A 103 N ARG A 112 SHEET 3 AB 6 GLN A 81 MET A 90 -1 O LEU A 82 N TYR A 102 SHEET 4 AB 6 VAL A 66 ALA A 75 -1 N ASP A 67 O ARG A 89 SHEET 5 AB 6 GLY A 45 ALA A 54 -1 O GLY A 45 N MET A 73 SHEET 6 AB 6 ALA A 172 LEU A 175 -1 O ALA A 172 N ALA A 54 SSBOND 1 CYS A 23 CYS A 167 1555 1555 2.03 SSBOND 2 CYS A 95 CYS A 183 1555 1555 2.06 CISPEP 1 PHE A 39 PRO A 40 0 2.80 CISPEP 2 GLY A 115 ARG A 116 0 7.05 SITE 1 AC1 10 HIS A 43 TRP A 47 PHE A 71 TRP A 100 SITE 2 AC1 10 TYR A 102 LEU A 123 GLU A 136 ARG A 143 SITE 3 AC1 10 TYR A 147 HOH A2083 SITE 1 AC2 4 HIS A 152 PRO A 153 GLU A 155 ARG A 178 CRYST1 49.940 49.940 144.670 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020024 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020024 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006912 0.00000