HEADER ISOMERASE 03-APR-09 2WF8 TITLE STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE INHIBITED WITH GLUCOSE-6- TITLE 2 PHOSPHATE, GLUCOSE-1-PHOSPHATE AND BERYLLIUM TRIFLUORIDE CAVEAT 2WF8 G1P A 1223 HAS WRONG CHIRALITY AT ATOM C1 G1P A 1223 HAS CAVEAT 2 2WF8 WRONG CHIRALITY AT ATOM C4 BG6 A 1224 HAS WRONG CHIRALITY CAVEAT 3 2WF8 AT ATOM C3 BG6 A 1224 HAS WRONG CHIRALITY AT ATOM C4 BG6 A CAVEAT 4 2WF8 1224 HAS WRONG CHIRALITY AT ATOM C5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-PGM; COMPND 5 EC: 5.4.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 3 ORGANISM_TAXID: 1358; SOURCE 4 STRAIN: 19435; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS ISOMERASE, PHOSPHOTRANSFERASE, GROUND STATE ANALOGUE, TRANSITION KEYWDS 2 STATE ANALOGUE, HALOACID DEHALOGENASE SUPERFAMILY EXPDTA X-RAY DIFFRACTION AUTHOR M.W.BOWLER,N.J.BAXTER,C.E.WEBSTER,S.POLLARD,T.ALIZADEH,A.M.HOUNSLOW, AUTHOR 2 M.J.CLIFF,W.BERMEL,N.H.WILLIAMS,F.HOLLFELDER,G.M.BLACKBURN, AUTHOR 3 J.P.WALTHO REVDAT 8 13-DEC-23 2WF8 1 HETSYN REVDAT 7 29-JUL-20 2WF8 1 COMPND REMARK HETNAM LINK REVDAT 7 2 1 SITE REVDAT 6 02-OCT-19 2WF8 1 ATOM REVDAT 5 22-MAY-19 2WF8 1 CAVEAT ATOM REVDAT 4 30-JAN-19 2WF8 1 CAVEAT JRNL REMARK ATOM REVDAT 3 16-MAY-12 2WF8 1 JRNL REVDAT 2 21-SEP-11 2WF8 1 REMARK HETATM ANISOU VERSN REVDAT 1 26-MAY-10 2WF8 0 JRNL AUTH J.L.GRIFFIN,M.W.BOWLER,N.J.BAXTER,K.N.LEIGH,H.R.DANNATT, JRNL AUTH 2 A.M.HOUNSLOW,G.M.BLACKBURN,C.E.WEBSTER,M.J.CLIFF,J.P.WALTHO JRNL TITL NEAR ATTACK CONFORMERS DOMINATE BETA-PHOSPHOGLUCOMUTASE JRNL TITL 2 COMPLEXES WHERE GEOMETRY AND CHARGE DISTRIBUTION REFLECT JRNL TITL 3 THOSE OF SUBSTRATE. JRNL REF PROC. NATL. ACAD. SCI. V. 109 6910 2012 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 22505741 JRNL DOI 10.1073/PNAS.1116855109 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 58366 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3121 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2728 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1680 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 257 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.11000 REMARK 3 B22 (A**2) : -0.89000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.350 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1872 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1269 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2551 ; 1.627 ; 2.057 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3087 ; 0.877 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 245 ; 5.002 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;37.652 ;25.904 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 330 ;12.144 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;19.666 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 293 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2053 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 334 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 1.072 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 454 ; 0.632 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1830 ; 1.650 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 742 ; 2.337 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 708 ; 3.554 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3141 ; 1.115 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 260 ; 5.578 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3100 ; 3.947 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE ATOMS OF THE BERYLLIUM FLUORIDE WERE REFINED REMARK 3 WITHOUT RESTRAINTS. REMARK 4 REMARK 4 2WF8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-APR-09. REMARK 100 THE DEPOSITION ID IS D_1290039352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND111 REMARK 200 OPTICS : GE211 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61544 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2WF5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28-29 % PEG 4000 AND 200 MM NA REMARK 280 ACETATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.65000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.65000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 219 REMARK 465 GLN A 220 REMARK 465 LYS A 221 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 98 O HOH A 2156 1.72 REMARK 500 NE2 GLN A 98 O HOH A 2156 1.94 REMARK 500 NE2 GLN A 98 O HOH A 2152 1.99 REMARK 500 CD GLN A 98 O HOH A 2156 2.01 REMARK 500 O HOH A 2011 O HOH A 2147 2.08 REMARK 500 O HOH A 2187 O HOH A 2188 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2184 O HOH A 2243 4555 1.77 REMARK 500 O HOH A 2188 O HOH A 2243 4555 1.82 REMARK 500 O HOH A 2187 O HOH A 2255 4555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 9 -66.68 -101.09 REMARK 500 VAL A 12 -53.73 -120.46 REMARK 500 ASP A 15 32.32 -78.51 REMARK 500 ASP A 15 50.31 -92.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A1221 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 BEF A1221 F1 105.1 REMARK 620 3 BEF A1221 F2 104.3 112.0 REMARK 620 4 BEF A1221 F3 113.1 112.5 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1222 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 ASP A 10 O 89.6 REMARK 620 3 ASP A 170 OD1 87.5 90.8 REMARK 620 4 BEF A1221 F3 89.5 98.2 170.5 REMARK 620 5 HOH A2219 O 87.2 176.7 88.2 82.7 REMARK 620 6 HOH A2220 O 173.6 87.3 87.0 96.5 95.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1226 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 98 OE1 REMARK 620 2 HOH A2241 O 149.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1225 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2050 O REMARK 620 2 HOH A2074 O 94.3 REMARK 620 3 HOH A2152 O 92.1 170.9 REMARK 620 4 HOH A2163 O 93.3 87.2 85.8 REMARK 620 5 HOH A2189 O 81.5 94.0 93.4 174.7 REMARK 620 6 HOH A2190 O 171.0 89.8 84.9 94.9 90.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z4N RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE WITH INHIBITOR BOUNDALPHA- REMARK 900 GALACTOSE 1-PHOSPHATE COCRYSTALLIZED WITH FLUORIDE REMARK 900 RELATED ID: 2WF7 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE INHIBITED WITH GLUCOSE-6- REMARK 900 PHOSPHONATE AND ALUMINIUM TETRAFLUORIDE REMARK 900 RELATED ID: 2WF9 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE INHIBITED WITH GLUCOSE-6- REMARK 900 PHOSPHATE, AND BERYLLIUM TRIFLUORIDE, CRYSTAL FORM 2 REMARK 900 RELATED ID: 1Z4O RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE WITH INHIBITOR BOUNDALPHA- REMARK 900 GALACTOSE 1-PHOSPHATE REMARK 900 RELATED ID: 2WF6 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE INHIBITED WITH GLUCOSE-6- REMARK 900 PHOSPAHTE AND ALUMINIUM TETRAFLUORIDE REMARK 900 RELATED ID: 1O03 RELATED DB: PDB REMARK 900 STRUCTURE OF PENTAVALENT PHOSPHOROUS INTERMEDIATE OF ANENZYME REMARK 900 CATALYZED PHOSPHORYL TRANSFER REACTION OBSERVED ONCOCRYSTALLIZATION REMARK 900 WITH GLUCOSE 6-PHOSPHATE REMARK 900 RELATED ID: 2WF5 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE INHIBITED WITH GLUCOSE-6- REMARK 900 PHOSPAHTE AND TRIFLUOROMAGNESATE REMARK 900 RELATED ID: 1ZOL RELATED DB: PDB REMARK 900 NATIVE BETA-PGM REMARK 900 RELATED ID: 2WFA RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE INHIBITED WITH BERYLLIUM REMARK 900 TRIFLUORIDE, IN AN OPEN CONFORMATION. REMARK 900 RELATED ID: 1LVH RELATED DB: PDB REMARK 900 THE STRUCTURE OF PHOSPHORYLATED BETA- PHOSPHOGLUCOMUTASEFROM REMARK 900 LACTOCCOCUS LACTIS TO 2. 3 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1O08 RELATED DB: PDB REMARK 900 STRUCTURE OF PENTAVALENT PHOSPHOROUS INTERMEDIATE OF ANENZYME REMARK 900 CATALYZED PHOSPHORYL TRANSFER REACTION OBSERVED ONCOCRYSTALLIZATION REMARK 900 WITH GLUCOSE 1-PHOSPHATE DBREF 2WF8 A 1 221 UNP P71447 PGMB_LACLA 1 221 SEQADV 2WF8 ARG A 125 UNP P71447 LYS 125 CONFLICT SEQADV 2WF8 HIS A 206 UNP P71447 TYR 206 CONFLICT SEQRES 1 A 221 MET PHE LYS ALA VAL LEU PHE ASP LEU ASP GLY VAL ILE SEQRES 2 A 221 THR ASP THR ALA GLU TYR HIS PHE ARG ALA TRP LYS ALA SEQRES 3 A 221 LEU ALA GLU GLU ILE GLY ILE ASN GLY VAL ASP ARG GLN SEQRES 4 A 221 PHE ASN GLU GLN LEU LYS GLY VAL SER ARG GLU ASP SER SEQRES 5 A 221 LEU GLN LYS ILE LEU ASP LEU ALA ASP LYS LYS VAL SER SEQRES 6 A 221 ALA GLU GLU PHE LYS GLU LEU ALA LYS ARG LYS ASN ASP SEQRES 7 A 221 ASN TYR VAL LYS MET ILE GLN ASP VAL SER PRO ALA ASP SEQRES 8 A 221 VAL TYR PRO GLY ILE LEU GLN LEU LEU LYS ASP LEU ARG SEQRES 9 A 221 SER ASN LYS ILE LYS ILE ALA LEU ALA SER ALA SER LYS SEQRES 10 A 221 ASN GLY PRO PHE LEU LEU GLU ARG MET ASN LEU THR GLY SEQRES 11 A 221 TYR PHE ASP ALA ILE ALA ASP PRO ALA GLU VAL ALA ALA SEQRES 12 A 221 SER LYS PRO ALA PRO ASP ILE PHE ILE ALA ALA ALA HIS SEQRES 13 A 221 ALA VAL GLY VAL ALA PRO SER GLU SER ILE GLY LEU GLU SEQRES 14 A 221 ASP SER GLN ALA GLY ILE GLN ALA ILE LYS ASP SER GLY SEQRES 15 A 221 ALA LEU PRO ILE GLY VAL GLY ARG PRO GLU ASP LEU GLY SEQRES 16 A 221 ASP ASP ILE VAL ILE VAL PRO ASP THR SER HIS TYR THR SEQRES 17 A 221 LEU GLU PHE LEU LYS GLU VAL TRP LEU GLN LYS GLN LYS HET BEF A1221 4 HET MG A1222 1 HET G1P A1223 32 HET BG6 A1224 16 HET NA A1225 1 HET NA A1226 1 HET PEG A1227 7 HET PEG A1228 7 HET PEG A1229 7 HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM MG MAGNESIUM ION HETNAM G1P 1-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE HETNAM BG6 6-O-PHOSPHONO-BETA-D-GLUCOPYRANOSE HETNAM NA SODIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN G1P ALPHA-D-GLUCOSE-1-PHOSPHATE; 1-O-PHOSPHONO-ALPHA-D- HETSYN 2 G1P GLUCOSE; 1-O-PHOSPHONO-D-GLUCOSE; 1-O-PHOSPHONO- HETSYN 3 G1P GLUCOSE HETSYN BG6 BETA-D-GLUCOSE-6-PHOSPHATE; 6-O-PHOSPHONO-BETA-D- HETSYN 2 BG6 GLUCOSE; 6-O-PHOSPHONO-D-GLUCOSE; 6-O-PHOSPHONO- HETSYN 3 BG6 GLUCOSE FORMUL 2 BEF BE F3 1- FORMUL 3 MG MG 2+ FORMUL 4 G1P C6 H13 O9 P FORMUL 5 BG6 C6 H13 O9 P FORMUL 6 NA 2(NA 1+) FORMUL 8 PEG 3(C4 H10 O3) FORMUL 11 HOH *257(H2 O) HELIX 1 1 ASP A 15 ILE A 31 1 17 HELIX 2 2 ASP A 37 GLU A 42 1 6 HELIX 3 3 SER A 48 ALA A 60 1 13 HELIX 4 4 SER A 65 ILE A 84 1 20 HELIX 5 5 SER A 88 VAL A 92 5 5 HELIX 6 6 GLY A 95 ASN A 106 1 12 HELIX 7 7 ASN A 118 MET A 126 1 9 HELIX 8 8 LEU A 128 PHE A 132 5 5 HELIX 9 9 PRO A 148 VAL A 158 1 11 HELIX 10 10 ALA A 161 SER A 163 5 3 HELIX 11 11 SER A 171 GLY A 182 1 12 HELIX 12 12 ARG A 190 GLY A 195 1 6 HELIX 13 13 ASP A 203 TYR A 207 5 5 HELIX 14 14 THR A 208 GLN A 218 1 11 SHEET 1 AA 6 ALA A 134 ILE A 135 0 SHEET 2 AA 6 LYS A 109 LEU A 112 1 N LEU A 112 O ALA A 134 SHEET 3 AA 6 ALA A 4 PHE A 7 1 O VAL A 5 N ALA A 111 SHEET 4 AA 6 SER A 165 GLU A 169 1 O ILE A 166 N LEU A 6 SHEET 5 AA 6 LEU A 184 VAL A 188 1 O LEU A 184 N GLY A 167 SHEET 6 AA 6 VAL A 199 VAL A 201 1 O VAL A 199 N GLY A 187 LINK OD1 ASP A 8 BE BEF A1221 1555 1555 1.63 LINK OD2 ASP A 8 MG MG A1222 1555 1555 2.05 LINK O ASP A 10 MG MG A1222 1555 1555 2.07 LINK OE1BGLN A 98 NA NA A1226 1555 1555 2.20 LINK OD1 ASP A 170 MG MG A1222 1555 1555 2.04 LINK F3 BEF A1221 MG MG A1222 1555 1555 2.02 LINK MG MG A1222 O HOH A2219 1555 1555 2.11 LINK MG MG A1222 O HOH A2220 1555 1555 2.11 LINK NA NA A1225 O HOH A2050 1555 1555 2.17 LINK NA NA A1225 O HOH A2074 1555 4455 2.08 LINK NA NA A1225 O HOH A2152 1555 1555 2.12 LINK NA NA A1225 O HOH A2163 1555 1555 2.06 LINK NA NA A1225 O HOH A2189 1555 4455 2.03 LINK NA NA A1225 O HOH A2190 1555 4455 2.09 LINK NA NA A1226 O HOH A2241 1555 1555 2.58 CISPEP 1 LYS A 145 PRO A 146 0 12.59 CRYST1 37.300 54.300 104.200 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026810 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009597 0.00000