HEADER ISOMERASE 03-APR-09 2WF9 TITLE STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE INHIBITED WITH GLUCOSE-6- TITLE 2 PHOSPHATE, AND BERYLLIUM TRIFLUORIDE, CRYSTAL FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-PGM; COMPND 5 EC: 5.4.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOCOCCUS LACTIS; SOURCE 3 ORGANISM_TAXID: 1358; SOURCE 4 STRAIN: 19435; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS GROUND STATE ANALOGUE, TRANSITION STATE ANALOGUE, ISOMERASE, KEYWDS 2 PHOSPHOTRANSFERASE, HALOACID DEHALOGENASE SUPERFAMILY EXPDTA X-RAY DIFFRACTION AUTHOR M.W.BOWLER,N.J.BAXTER,C.E.WEBSTER,S.POLLARD,T.ALIZADEH,A.M.HOUNSLOW, AUTHOR 2 M.J.CLIFF,W.BERMEL,N.H.WILLIAMS,F.HOLLFELDER,G.M.BLACKBURN, AUTHOR 3 J.P.WALTHO REVDAT 4 13-DEC-23 2WF9 1 HETSYN REVDAT 3 29-JUL-20 2WF9 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 16-MAY-12 2WF9 1 JRNL REMARK VERSN HETNAM REVDAT 2 2 1 FORMUL REVDAT 1 26-MAY-10 2WF9 0 JRNL AUTH J.L.GRIFFIN,M.W.BOWLER,N.J.BAXTER,K.N.LEIGH,H.R.DANNATT, JRNL AUTH 2 A.M.HOUNSLOW,G.M.BLACKBURN,C.E.WEBSTER,M.J.CLIFF,J.P.WALTHO JRNL TITL NEAR ATTACK CONFORMERS DOMINATE BETA-PHOSPHOGLUCOMUTASE JRNL TITL 2 COMPLEXES WHERE GEOMETRY AND CHARGE DISTRIBUTION REFLECT JRNL TITL 3 THOSE OF SUBSTRATE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 6910 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22505741 JRNL DOI 10.1073/PNAS.1116855109 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 34083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1814 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 52.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.12000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.098 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.305 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1813 ; 0.014 ; 0.025 REMARK 3 BOND LENGTHS OTHERS (A): 1217 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2471 ; 1.650 ; 2.323 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3008 ; 0.901 ; 3.018 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 237 ; 6.722 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;39.456 ;25.875 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 327 ;12.535 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;11.021 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 280 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2023 ; 0.016 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): 328 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1131 ; 0.492 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 455 ; 0.112 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1827 ; 0.909 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 682 ; 2.422 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 634 ; 2.449 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3030 ; 1.998 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 258 ; 1.631 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2992 ; 0.958 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE ATOMS OF THE BERYLLIUM FLUORIDE WERE REFINED REMARK 3 WITHOUT RESTRAINTS. REMARK 4 REMARK 4 2WF9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-APR-09. REMARK 100 THE DEPOSITION ID IS D_1290039354. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND111 REMARK 200 OPTICS : GE211 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35943 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2WF5 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28-29 % PEG 4000 AND 200 MM NA REMARK 280 ACETATE, PH 7.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 THR A 16 OH TYR A 80 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 9 -69.18 -96.71 REMARK 500 VAL A 12 -60.50 -124.43 REMARK 500 ALA A 60 -161.32 84.15 REMARK 500 ALA A 142 145.62 167.43 REMARK 500 ALA A 143 89.28 47.91 REMARK 500 ALA A 143 89.22 47.91 REMARK 500 LEU A 194 -59.79 -127.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 59 ALA A 60 134.19 REMARK 500 VAL A 141 ALA A 142 147.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2009 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1222 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 ASP A 10 O 85.5 REMARK 620 3 ASP A 170 OD1 89.6 87.5 REMARK 620 4 BEF A1225 F3 88.2 96.6 175.3 REMARK 620 5 HOH A2006 O 172.0 86.5 90.2 92.5 REMARK 620 6 HOH A2195 O 89.7 173.4 87.9 87.9 98.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A1225 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 BEF A1225 F1 107.6 REMARK 620 3 BEF A1225 F2 107.6 108.0 REMARK 620 4 BEF A1225 F3 109.9 110.8 112.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1226 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2027 O REMARK 620 2 HOH A2107 O 92.3 REMARK 620 3 HOH A2110 O 109.6 72.2 REMARK 620 4 HOH A2114 O 104.5 143.2 71.4 REMARK 620 5 HOH A2116 O 168.5 77.3 72.1 86.8 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Z4O RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE WITH INHIBITOR BOUNDALPHA- REMARK 900 GALACTOSE 1-PHOSPHATE REMARK 900 RELATED ID: 1O03 RELATED DB: PDB REMARK 900 STRUCTURE OF PENTAVALENT PHOSPHOROUS INTERMEDIATE OF ANENZYME REMARK 900 CATALYZED PHOSPHORYL TRANSFER REACTION OBSERVED ONCOCRYSTALLIZATION REMARK 900 WITH GLUCOSE 6-PHOSPHATE REMARK 900 RELATED ID: 1ZOL RELATED DB: PDB REMARK 900 NATIVE BETA-PGM REMARK 900 RELATED ID: 1Z4N RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE WITH INHIBITOR BOUNDALPHA- REMARK 900 GALACTOSE 1-PHOSPHATE COCRYSTALLIZED WITH FLUORIDE REMARK 900 RELATED ID: 1O08 RELATED DB: PDB REMARK 900 STRUCTURE OF PENTAVALENT PHOSPHOROUS INTERMEDIATE OF ANENZYME REMARK 900 CATALYZED PHOSPHORYL TRANSFER REACTION OBSERVED ONCOCRYSTALLIZATION REMARK 900 WITH GLUCOSE 1-PHOSPHATE REMARK 900 RELATED ID: 1LVH RELATED DB: PDB REMARK 900 THE STRUCTURE OF PHOSPHORYLATED BETA- PHOSPHOGLUCOMUTASEFROM REMARK 900 LACTOCCOCUS LACTIS TO 2. 3 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 2WF5 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE INHIBITED WITH GLUCOSE-6- REMARK 900 PHOSPAHTE AND TRIFLUOROMAGNESATE REMARK 900 RELATED ID: 2WF6 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE INHIBITED WITH GLUCOSE-6- REMARK 900 PHOSPAHTE AND ALUMINIUM TETRAFLUORIDE REMARK 900 RELATED ID: 2WF7 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE INHIBITED WITH GLUCOSE-6- REMARK 900 PHOSPHONATE AND ALUMINIUM TETRAFLUORIDE REMARK 900 RELATED ID: 2WF8 RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE INHIBITED WITH GLUCOSE-6- REMARK 900 PHOSPHATE, GLUCOSE-1- PHOSPHATE AND BERYLLIUM TRIFLUORIDE REMARK 900 RELATED ID: 2WFA RELATED DB: PDB REMARK 900 STRUCTURE OF BETA-PHOSPHOGLUCOMUTASE INHIBITED WITH BERYLLIUM REMARK 900 TRIFLUORIDE, IN AN OPEN CONFORMATION. DBREF 2WF9 A 1 221 UNP P71447 PGMB_LACLA 1 221 SEQADV 2WF9 ARG A 125 UNP P71447 LYS 125 CONFLICT SEQADV 2WF9 HIS A 206 UNP P71447 TYR 206 CONFLICT SEQRES 1 A 221 MET PHE LYS ALA VAL LEU PHE ASP LEU ASP GLY VAL ILE SEQRES 2 A 221 THR ASP THR ALA GLU TYR HIS PHE ARG ALA TRP LYS ALA SEQRES 3 A 221 LEU ALA GLU GLU ILE GLY ILE ASN GLY VAL ASP ARG GLN SEQRES 4 A 221 PHE ASN GLU GLN LEU LYS GLY VAL SER ARG GLU ASP SER SEQRES 5 A 221 LEU GLN LYS ILE LEU ASP LEU ALA ASP LYS LYS VAL SER SEQRES 6 A 221 ALA GLU GLU PHE LYS GLU LEU ALA LYS ARG LYS ASN ASP SEQRES 7 A 221 ASN TYR VAL LYS MET ILE GLN ASP VAL SER PRO ALA ASP SEQRES 8 A 221 VAL TYR PRO GLY ILE LEU GLN LEU LEU LYS ASP LEU ARG SEQRES 9 A 221 SER ASN LYS ILE LYS ILE ALA LEU ALA SER ALA SER LYS SEQRES 10 A 221 ASN GLY PRO PHE LEU LEU GLU ARG MET ASN LEU THR GLY SEQRES 11 A 221 TYR PHE ASP ALA ILE ALA ASP PRO ALA GLU VAL ALA ALA SEQRES 12 A 221 SER LYS PRO ALA PRO ASP ILE PHE ILE ALA ALA ALA HIS SEQRES 13 A 221 ALA VAL GLY VAL ALA PRO SER GLU SER ILE GLY LEU GLU SEQRES 14 A 221 ASP SER GLN ALA GLY ILE GLN ALA ILE LYS ASP SER GLY SEQRES 15 A 221 ALA LEU PRO ILE GLY VAL GLY ARG PRO GLU ASP LEU GLY SEQRES 16 A 221 ASP ASP ILE VAL ILE VAL PRO ASP THR SER HIS TYR THR SEQRES 17 A 221 LEU GLU PHE LEU LYS GLU VAL TRP LEU GLN LYS GLN LYS HET MG A1222 1 HET G6P A1223 16 HET BG6 A1224 16 HET BEF A1225 4 HET NA A1226 1 HETNAM MG MAGNESIUM ION HETNAM G6P 6-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE HETNAM BG6 6-O-PHOSPHONO-BETA-D-GLUCOPYRANOSE HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM NA SODIUM ION HETSYN G6P ALPHA-D-GLUCOSE-6-PHOSPHATE; 6-O-PHOSPHONO-ALPHA-D- HETSYN 2 G6P GLUCOSE; 6-O-PHOSPHONO-D-GLUCOSE; 6-O-PHOSPHONO- HETSYN 3 G6P GLUCOSE HETSYN BG6 BETA-D-GLUCOSE-6-PHOSPHATE; 6-O-PHOSPHONO-BETA-D- HETSYN 2 BG6 GLUCOSE; 6-O-PHOSPHONO-D-GLUCOSE; 6-O-PHOSPHONO- HETSYN 3 BG6 GLUCOSE FORMUL 2 MG MG 2+ FORMUL 3 G6P C6 H13 O9 P FORMUL 4 BG6 C6 H13 O9 P FORMUL 5 BEF BE F3 1- FORMUL 6 NA NA 1+ FORMUL 7 HOH *256(H2 O) HELIX 1 1 THR A 16 GLY A 32 1 17 HELIX 2 2 ASP A 37 GLU A 42 1 6 HELIX 3 3 GLN A 43 LYS A 45 5 3 HELIX 4 4 SER A 48 ASP A 58 1 11 HELIX 5 5 SER A 65 ILE A 84 1 20 HELIX 6 6 GLN A 85 VAL A 87 5 3 HELIX 7 7 SER A 88 VAL A 92 5 5 HELIX 8 8 GLY A 95 ASN A 106 1 12 HELIX 9 9 ASN A 118 MET A 126 1 9 HELIX 10 10 LEU A 128 PHE A 132 5 5 HELIX 11 11 ASP A 137 VAL A 141 5 5 HELIX 12 12 PRO A 148 VAL A 158 1 11 HELIX 13 13 ALA A 161 SER A 163 5 3 HELIX 14 14 SER A 171 GLY A 182 1 12 HELIX 15 15 ARG A 190 LEU A 194 5 5 HELIX 16 16 ASP A 203 TYR A 207 5 5 HELIX 17 17 THR A 208 LYS A 219 1 12 SHEET 1 AA 6 ALA A 134 ILE A 135 0 SHEET 2 AA 6 LYS A 109 LEU A 112 1 N LEU A 112 O ALA A 134 SHEET 3 AA 6 ALA A 4 PHE A 7 1 O VAL A 5 N ALA A 111 SHEET 4 AA 6 SER A 165 GLU A 169 1 O ILE A 166 N LEU A 6 SHEET 5 AA 6 LEU A 184 VAL A 188 1 O LEU A 184 N GLY A 167 SHEET 6 AA 6 VAL A 199 VAL A 201 1 O VAL A 199 N GLY A 187 LINK OD2 ASP A 8 MG MG A1222 1555 1555 2.05 LINK OD1 ASP A 8 BE BEF A1225 1555 1555 1.68 LINK O ASP A 10 MG MG A1222 1555 1555 2.16 LINK OD1 ASP A 170 MG MG A1222 1555 1555 2.15 LINK MG MG A1222 F3 BEF A1225 1555 1555 1.98 LINK MG MG A1222 O HOH A2006 1555 1555 2.03 LINK MG MG A1222 O HOH A2195 1555 1555 2.09 LINK NA NA A1226 O HOH A2027 1555 4555 2.29 LINK NA NA A1226 O HOH A2107 1555 1555 2.39 LINK NA NA A1226 O HOH A2110 1555 1555 2.29 LINK NA NA A1226 O HOH A2114 1555 1555 2.57 LINK NA NA A1226 O HOH A2116 1555 1555 2.20 CISPEP 1 ALA A 60 ASP A 61 0 4.41 CISPEP 2 ALA A 142 ALA A 143 0 -26.37 CISPEP 3 LYS A 145 PRO A 146 0 13.92 CRYST1 32.100 72.700 85.200 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031153 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011737 0.00000