HEADER CELL CYCLE 27-APR-09 2WGX TITLE HUMAN P53 CORE DOMAIN MUTANT M133L-V203A-Y236F-N239Y-T253I-N268D COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN, RESIDUES 94-312; COMPND 5 SYNONYM: TUMOR SUPPRESSOR P53, PHOSPHOPROTEIN P53, ANTIGEN NY-CO-13, COMPND 6 P53; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL CYCLE, P53, P63, P73, CANCER, NUCLEUS, APOPTOSIS, TUMOR KEYWDS 2 SUPPRESSOR, SECOND-SITE SUPPRESSOR MUTATION, DNA-BINDING DOMAIN, KEYWDS 3 TRANSCRIPTION REGULATION, NUCLEAR PROTEIN, PROTEIN STABILIZATION, KEYWDS 4 LI-FRAUMENI SYNDROME, METAL BINDING, ZINC, SUPERSTABLE MUTANT, DNA- KEYWDS 5 BINDING PROTEIN, POLYMORPHISM EXPDTA X-RAY DIFFRACTION AUTHOR A.C.JOERGER,K.H.KHOO,A.R.FERSHT REVDAT 5 13-DEC-23 2WGX 1 REMARK LINK REVDAT 4 08-MAY-19 2WGX 1 REMARK REVDAT 3 03-OCT-12 2WGX 1 COMPND REMARK VERSN REVDAT 2 30-JUN-09 2WGX 1 JRNL REVDAT 1 12-MAY-09 2WGX 0 JRNL AUTH K.H.KHOO,A.C.JOERGER,S.M.V.FREUND,A.R.FERSHT JRNL TITL STABILISING THE DNA-BINDING DOMAIN OF P53 BY RATIONAL DESIGN JRNL TITL 2 OF ITS HYDROPHOBIC CORE. JRNL REF PROTEIN ENG.DES.SEL. V. 22 421 2009 JRNL REFN ISSN 1741-0126 JRNL PMID 19515728 JRNL DOI 10.1093/PROTEIN/GZP018 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.C.JOERGER,M.D.ALLEN,A.R.FERSHT REMARK 1 TITL CRYSTAL STRUCTURE OF A SUPERSTABLE MUTANT OF HUMAN P53 CORE REMARK 1 TITL 2 DOMAIN. INSIGHTS INTO THE MECHANISM OF RESCUING ONCOGENIC REMARK 1 TITL 3 MUTATIONS. REMARK 1 REF J.BIOL.CHEM. V. 279 1291 2004 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 14534297 REMARK 1 DOI 10.1074/JBC.M309732200 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 48562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.6092 - 5.4189 0.96 2911 153 0.1876 0.2377 REMARK 3 2 5.4189 - 4.3087 0.99 2975 168 0.1461 0.1812 REMARK 3 3 4.3087 - 3.7662 0.99 2974 176 0.1511 0.1579 REMARK 3 4 3.7662 - 3.4228 1.00 2984 158 0.1587 0.1630 REMARK 3 5 3.4228 - 3.1781 1.00 3032 154 0.1628 0.1684 REMARK 3 6 3.1781 - 2.9910 1.00 3017 136 0.1728 0.1764 REMARK 3 7 2.9910 - 2.8415 1.00 2978 165 0.1797 0.2126 REMARK 3 8 2.8415 - 2.7179 1.00 3035 153 0.1764 0.2211 REMARK 3 9 2.7179 - 2.6134 1.00 3005 143 0.1606 0.2166 REMARK 3 10 2.6134 - 2.5233 0.99 3026 129 0.1664 0.1783 REMARK 3 11 2.5233 - 2.4445 0.99 2992 157 0.1518 0.1839 REMARK 3 12 2.4445 - 2.3747 0.99 3008 151 0.1514 0.1557 REMARK 3 13 2.3747 - 2.3122 0.98 2959 159 0.1617 0.1698 REMARK 3 14 2.3122 - 2.2558 0.98 2950 136 0.1544 0.2110 REMARK 3 15 2.2558 - 2.2046 0.97 2922 173 0.1593 0.1779 REMARK 3 16 2.2046 - 2.1577 0.97 2942 129 0.1559 0.2019 REMARK 3 17 2.1577 - 2.1146 0.96 2892 166 0.1599 0.2029 REMARK 3 18 2.1146 - 2.0747 0.96 2897 140 0.1648 0.2192 REMARK 3 19 2.0747 - 2.0377 0.96 2855 166 0.1656 0.2042 REMARK 3 20 2.0377 - 2.0031 0.95 2880 148 0.1649 0.2495 REMARK 3 21 2.0031 - 1.9708 0.95 2813 151 0.1718 0.1786 REMARK 3 22 1.9708 - 1.9405 0.94 2872 127 0.1655 0.1730 REMARK 3 23 1.9405 - 1.9120 0.93 2817 151 0.1642 0.1968 REMARK 3 24 1.9120 - 1.8851 0.94 2829 157 0.1743 0.2409 REMARK 3 25 1.8851 - 1.8596 0.93 2795 140 0.1719 0.2244 REMARK 3 26 1.8596 - 1.8355 0.92 2779 151 0.1750 0.2410 REMARK 3 27 1.8355 - 1.8125 0.92 2732 164 0.1723 0.2069 REMARK 3 28 1.8125 - 1.7907 0.92 2822 141 0.1818 0.2135 REMARK 3 29 1.7907 - 1.7699 0.88 2593 170 0.1914 0.2160 REMARK 3 30 1.7699 - 1.7500 0.81 2438 129 0.2030 0.2294 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 49.77 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.00110 REMARK 3 B22 (A**2) : -3.28180 REMARK 3 B33 (A**2) : -1.82440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3176 REMARK 3 ANGLE : 1.178 4312 REMARK 3 CHIRALITY : 0.083 472 REMARK 3 PLANARITY : 0.006 570 REMARK 3 DIHEDRAL : 14.845 1196 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WGX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-APR-09. REMARK 100 THE DEPOSITION ID IS D_1290039499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.06 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48639 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 65.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1UOL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SITTING DROP VAPOR DIFFUSION AT 21 REMARK 280 DEGREE C. PROTEIN SOLUTION: 6 MG/ML IN 25 MM SODIUM PHOSPHATE PH REMARK 280 7.2, 150 MM KCL, 5 MM DTT. RESERVOIR BUFFER: 100 MM HEPES PH 7.2, REMARK 280 19 % PEG 4000, 5 MM DTT., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.66400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.45750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.53750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.45750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.66400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.53750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, MET 133 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 203 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, TYR 236 TO PHE REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 239 TO TYR REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 253 TO ILE REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 268 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN B, MET 133 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN B, VAL 203 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, TYR 236 TO PHE REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASN 239 TO TYR REMARK 400 ENGINEERED RESIDUE IN CHAIN B, THR 253 TO ILE REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ASN 268 TO ASP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 94 REMARK 465 SER A 95 REMARK 465 LYS A 292 REMARK 465 GLY A 293 REMARK 465 GLU A 294 REMARK 465 PRO A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 GLU A 398 REMARK 465 LEU A 399 REMARK 465 PRO A 300 REMARK 465 PRO A 301 REMARK 465 GLY A 302 REMARK 465 SER A 303 REMARK 465 THR A 304 REMARK 465 LYS A 305 REMARK 465 ARG A 306 REMARK 465 ALA A 307 REMARK 465 LEU A 308 REMARK 465 PRO A 309 REMARK 465 ASN A 310 REMARK 465 ASN A 311 REMARK 465 THR A 312 REMARK 465 SER B 94 REMARK 465 SER B 95 REMARK 465 SER B 96 REMARK 465 LYS B 292 REMARK 465 GLY B 293 REMARK 465 GLU B 294 REMARK 465 PRO B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 GLU B 398 REMARK 465 LEU B 399 REMARK 465 PRO B 300 REMARK 465 PRO B 301 REMARK 465 GLY B 302 REMARK 465 SER B 303 REMARK 465 THR B 304 REMARK 465 LYS B 305 REMARK 465 ARG B 306 REMARK 465 ALA B 307 REMARK 465 LEU B 308 REMARK 465 PRO B 309 REMARK 465 ASN B 310 REMARK 465 ASN B 311 REMARK 465 THR B 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 291 CA C O CB CG CD CE REMARK 470 LYS A 291 NZ REMARK 470 LYS B 291 CA C O CB CG CD CE REMARK 470 LYS B 291 NZ REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 103.7 REMARK 620 3 CYS A 238 SG 110.8 107.7 REMARK 620 4 CYS A 242 SG 110.4 105.6 117.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 102.9 REMARK 620 3 CYS B 238 SG 112.3 106.5 REMARK 620 4 CYS B 242 SG 112.6 105.9 115.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2BIQ RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT T123A-M133L- H168R-V203A-N239Y-R249S- REMARK 900 N268D REMARK 900 RELATED ID: 1DT7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE C-TERMINAL NEGATIVE REGULATORY DOMAIN OF REMARK 900 P53 IN A COMPLEX WITH CA2+-BOUND S100B(BB) REMARK 900 RELATED ID: 2J1X RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A- Y220C-N239Y-N268D REMARK 900 RELATED ID: 1UOL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN P53 CORE DOMAIN MUTANT M133L/V203A/ REMARK 900 N239Y/N268D AT 1 .9 A RESOLUTION. REMARK 900 RELATED ID: 2B3G RELATED DB: PDB REMARK 900 P53N (FRAGMENT 33-60) BOUND TO RPA70N REMARK 900 RELATED ID: 2BIN RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-H168R- V203A-N239Y-N268D REMARK 900 RELATED ID: 1OLH RELATED DB: PDB REMARK 900 P53 (OLIGOMERIZATION DOMAIN) (NMR, 35 STRUCTURES) REMARK 900 RELATED ID: 1PES RELATED DB: PDB REMARK 900 TUMOR ANTIGEN P53 (TETRAMERIZATION DOMAIN) ( P53TET) (NMR, REMARK 900 MINIMIZED AVERAGE STRUCTURE) REMARK 900 RELATED ID: 1TSR RELATED DB: PDB REMARK 900 P53 CORE DOMAIN IN COMPLEX WITH DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 2J21 RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A- N239Y-N268D-R282W REMARK 900 RELATED ID: 2GS0 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE COMPLEX BETWEEN THE PH DOMAIN OF THETFB1 REMARK 900 SUBUNIT FROM TFIIH AND THE ACTIVATION DOMAIN OF P53 REMARK 900 RELATED ID: 2J0Z RELATED DB: PDB REMARK 900 P53 TETRAMERIZATION DOMAIN WILD TYPE REMARK 900 RELATED ID: 1C26 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF P53 TETRAMERIZATION DOMAIN REMARK 900 RELATED ID: 1SAL RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAD STRUCTURES) REMARK 900 RELATED ID: 1KZY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE 53BP1 BRCT REGION COMPLEXED TOTUMOR REMARK 900 SUPPRESSOR P53 REMARK 900 RELATED ID: 1XQH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF THEMETHYLTRANSFERASE SET9 REMARK 900 (ALSO KNOWN AS SET7 /9) WITH A P53PEPTIDE AND SAH REMARK 900 RELATED ID: 2FEJ RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF HUMAN P53 DNA BINDING DOMAIN. REMARK 900 RELATED ID: 2AHI RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS(COMPLEX III) REMARK 900 RELATED ID: 1A1U RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE DETERMINATION OF A P53 MUTANT DIMERIZATION REMARK 900 DOMAIN, NMR, MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 3SAK RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAC STRUCTURES) REMARK 900 RELATED ID: 2F1X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TRAF-LIKE DOMAIN OF HAUSP/USP7BOUND TO A REMARK 900 P53 PEPTIDE REMARK 900 RELATED ID: 1SAF RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAD STRUCTURES) REMARK 900 RELATED ID: 2BIO RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A- N239Y-R249S-N268D REMARK 900 RELATED ID: 1OLG RELATED DB: PDB REMARK 900 P53 (OLIGOMERIZATION DOMAIN) (NMR, MINIMIZED AVERAGE STRUCTURE) REMARK 900 RELATED ID: 2J11 RELATED DB: PDB REMARK 900 P53 TETRAMERIZATION DOMAIN MUTANT Y327S T329G Q331G REMARK 900 RELATED ID: 2BIP RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-H168R- V203A-N239Y-R249S-N268D REMARK 900 RELATED ID: 1PET RELATED DB: PDB REMARK 900 TUMOR ANTIGEN P53 (TETRAMERIZATION DOMAIN) ( P53TET) (NMR, 19 REMARK 900 STRUCTURES) REMARK 900 RELATED ID: 1JSP RELATED DB: PDB REMARK 900 NMR STRUCTURE OF CBP BROMODOMAIN IN COMPLEX WITH P53 PEPTIDE REMARK 900 RELATED ID: 2J1Y RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A- N239Y-G245S-N268D REMARK 900 RELATED ID: 1MA3 RELATED DB: PDB REMARK 900 STRUCTURE OF A SIR2 ENZYME BOUND TO AN ACETYLATED P53PEPTIDE REMARK 900 RELATED ID: 2VUK RELATED DB: PDB REMARK 900 STRUCTURE OF THE P53 CORE DOMAIN MUTANT Y220C BOUND TO THE REMARK 900 STABILIZING SMALL- MOLECULE DRUG PHIKAN083 REMARK 900 RELATED ID: 1AIE RELATED DB: PDB REMARK 900 P53 TETRAMERIZATION DOMAIN CRYSTAL STRUCTURE REMARK 900 RELATED ID: 2H1L RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE ONCOPROTEIN SV40 LARGE T ANTIGEN ANDP53 TUMOR REMARK 900 SUPPRESSOR COMPLEX REMARK 900 RELATED ID: 1SAJ RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAD STRUCTURES) REMARK 900 RELATED ID: 1TUP RELATED DB: PDB REMARK 900 TUMOR SUPPRESSOR P53 COMPLEXED WITH DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1HS5 RELATED DB: PDB REMARK 900 NMR SOLUTION STRUCTURE OF DESIGNED P53 DIMER REMARK 900 RELATED ID: 2ATA RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS(COMPLEX II) REMARK 900 RELATED ID: 1YCQ RELATED DB: PDB REMARK 900 XENOPUS LAEVIS MDM2 BOUND TO THE TRANSACTIVATION DOMAIN OF HUMAN P53 REMARK 900 RELATED ID: 1GZH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BRCT DOMAINS OF HUMAN 53BP1 BOUND TO THE REMARK 900 P53 TUMOR SUPRESSOR REMARK 900 RELATED ID: 1SAH RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAD STRUCTURES) REMARK 900 RELATED ID: 1YCR RELATED DB: PDB REMARK 900 MDM2 BOUND TO THE TRANSACTIVATION DOMAIN OF P53 REMARK 900 RELATED ID: 2BIM RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A- N239Y-N268D-R273H REMARK 900 RELATED ID: 2J10 RELATED DB: PDB REMARK 900 P53 TETRAMERIZATION DOMAIN MUTANT T329F Q331K REMARK 900 RELATED ID: 1SAK RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAC STRUCTURES) REMARK 900 RELATED ID: 2ADY RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS(COMPLEX IV) REMARK 900 RELATED ID: 2J1Z RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A- N239Y-N268D-F270L REMARK 900 RELATED ID: 1SAE RELATED DB: PDB REMARK 900 HIGH RESOLUTION SOLUTION NMR STRUCTURE OF THE OLIGOMERIZATION REMARK 900 DOMAIN OF P53 BY MULTI- DIMENSIONAL NMR (SAC STRUCTURES) REMARK 900 RELATED ID: 2AC0 RELATED DB: PDB REMARK 900 STRUCTURAL BASIS OF DNA RECOGNITION BY P53 TETRAMERS(COMPLEX I) REMARK 900 RELATED ID: 1YCS RELATED DB: PDB REMARK 900 P53-53BP2 COMPLEX REMARK 900 RELATED ID: 2J20 RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V203A- N239Y-N268D-R273C REMARK 900 RELATED ID: 1H26 RELATED DB: PDB REMARK 900 CDK2/CYCLINA IN COMPLEX WITH AN 11-RESIDUE RECRUITMENT PEPTIDE FROM REMARK 900 P53 REMARK 900 RELATED ID: 2J1W RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT M133L-V143A- V203A-N239Y-N268D REMARK 999 REMARK 999 SEQUENCE REMARK 999 ENGINEERED MUTATIONS DBREF 2WGX A 94 312 UNP P04637 P53_HUMAN 94 312 DBREF 2WGX B 94 312 UNP P04637 P53_HUMAN 94 312 SEQADV 2WGX LEU A 133 UNP P04637 MET 133 ENGINEERED MUTATION SEQADV 2WGX ALA A 203 UNP P04637 VAL 203 ENGINEERED MUTATION SEQADV 2WGX PHE A 236 UNP P04637 TYR 236 ENGINEERED MUTATION SEQADV 2WGX TYR A 239 UNP P04637 ASN 239 ENGINEERED MUTATION SEQADV 2WGX ILE A 253 UNP P04637 THR 253 ENGINEERED MUTATION SEQADV 2WGX ASP A 268 UNP P04637 ASN 268 ENGINEERED MUTATION SEQADV 2WGX LEU B 133 UNP P04637 MET 133 ENGINEERED MUTATION SEQADV 2WGX ALA B 203 UNP P04637 VAL 203 ENGINEERED MUTATION SEQADV 2WGX PHE B 236 UNP P04637 TYR 236 ENGINEERED MUTATION SEQADV 2WGX TYR B 239 UNP P04637 ASN 239 ENGINEERED MUTATION SEQADV 2WGX ILE B 253 UNP P04637 THR 253 ENGINEERED MUTATION SEQADV 2WGX ASP B 268 UNP P04637 ASN 268 ENGINEERED MUTATION SEQRES 1 A 219 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 A 219 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 A 219 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 A 219 LEU PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 A 219 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 A 219 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 A 219 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 A 219 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 A 219 GLU GLY ASN LEU ARG ALA GLU TYR LEU ASP ASP ARG ASN SEQRES 10 A 219 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 A 219 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN PHE SEQRES 12 A 219 MET CYS TYR SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 A 219 PRO ILE LEU ILE ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 A 219 ASN LEU LEU GLY ARG ASP SER PHE GLU VAL ARG VAL CYS SEQRES 15 A 219 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 A 219 LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO PRO SEQRES 17 A 219 GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR SEQRES 1 B 219 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 B 219 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 B 219 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 B 219 LEU PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 B 219 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 B 219 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 B 219 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 B 219 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 B 219 GLU GLY ASN LEU ARG ALA GLU TYR LEU ASP ASP ARG ASN SEQRES 10 B 219 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 B 219 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN PHE SEQRES 12 B 219 MET CYS TYR SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 B 219 PRO ILE LEU ILE ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 B 219 ASN LEU LEU GLY ARG ASP SER PHE GLU VAL ARG VAL CYS SEQRES 15 B 219 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 B 219 LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO PRO SEQRES 17 B 219 GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR HET ZN A1300 1 HET ZN B1300 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *455(H2 O) HELIX 1 1 GLN A 165 MET A 169 5 5 HELIX 2 2 HIS A 178 CYS A 182 5 5 HELIX 3 3 CYS A 277 ARG A 290 1 14 HELIX 4 4 HIS B 178 CYS B 182 5 5 HELIX 5 5 CYS B 277 ARG B 290 1 14 SHEET 1 AA 4 ARG A 110 GLY A 112 0 SHEET 2 AA 4 CYS A 141 TRP A 146 -1 O GLN A 144 N GLY A 112 SHEET 3 AA 4 THR A 230 PHE A 236 -1 O THR A 230 N LEU A 145 SHEET 4 AA 4 ILE A 195 VAL A 197 -1 O ARG A 196 N ASN A 235 SHEET 1 AB 7 CYS A 124 SER A 127 0 SHEET 2 AB 7 LYS A 132 CYS A 135 -1 O LYS A 132 N SER A 127 SHEET 3 AB 7 LEU A 264 VAL A 274 1 O GLU A 271 N LEU A 133 SHEET 4 AB 7 ILE A 251 GLU A 258 -1 O ILE A 251 N VAL A 272 SHEET 5 AB 7 ARG A 156 TYR A 163 -1 O ARG A 156 N GLU A 258 SHEET 6 AB 7 HIS A 214 PRO A 219 -1 O VAL A 216 N ALA A 159 SHEET 7 AB 7 GLU A 204 ASP A 207 -1 O GLU A 204 N VAL A 217 SHEET 1 BA 4 ARG B 110 GLY B 112 0 SHEET 2 BA 4 CYS B 141 TRP B 146 -1 O GLN B 144 N GLY B 112 SHEET 3 BA 4 THR B 230 PHE B 236 -1 O THR B 230 N LEU B 145 SHEET 4 BA 4 ILE B 195 VAL B 197 -1 O ARG B 196 N ASN B 235 SHEET 1 BB 7 CYS B 124 SER B 127 0 SHEET 2 BB 7 LYS B 132 CYS B 135 -1 O LYS B 132 N SER B 127 SHEET 3 BB 7 LEU B 264 VAL B 274 1 O GLU B 271 N LEU B 133 SHEET 4 BB 7 ILE B 251 GLU B 258 -1 O ILE B 251 N VAL B 272 SHEET 5 BB 7 ARG B 156 TYR B 163 -1 O ARG B 156 N GLU B 258 SHEET 6 BB 7 HIS B 214 PRO B 219 -1 O VAL B 216 N ALA B 159 SHEET 7 BB 7 GLU B 204 ASP B 207 -1 O GLU B 204 N VAL B 217 LINK SG CYS A 176 ZN ZN B1300 1555 1555 2.37 LINK ND1 HIS A 179 ZN ZN B1300 1555 1555 1.99 LINK SG CYS A 238 ZN ZN B1300 1555 1555 2.32 LINK SG CYS A 242 ZN ZN B1300 1555 1555 2.28 LINK ZN ZN A1300 SG CYS B 176 1555 1555 2.36 LINK ZN ZN A1300 ND1 HIS B 179 1555 1555 2.04 LINK ZN ZN A1300 SG CYS B 238 1555 1555 2.30 LINK ZN ZN A1300 SG CYS B 242 1555 1555 2.29 SITE 1 AC1 4 CYS B 176 HIS B 179 CYS B 238 CYS B 242 SITE 1 AC2 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 CRYST1 65.328 71.075 104.915 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015307 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014070 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009532 0.00000