HEADER OXIDOREDUCTASE 04-MAY-09 2WHF TITLE INTERACTION OF MYCOBACTERIUM TUBERCULOSIS CYP130 WITH HETEROCYCLIC TITLE 2 ARYLAMINES COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CYTOCHROME P450 130; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-405; COMPND 5 SYNONYM: CYP130; COMPND 6 EC: 1.14.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 ATCC: 25618; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: HMS174; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCWORI KEYWDS IRON, HEME, MONOOXYGENASE, METAL-BINDING, OXIDOREDUCTASE, KEYWDS 2 HYPOTHETICAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.M.PODUST,H.OUELLET,J.P.VON KRIES,P.R.ORTIZ DE MONTELLANO REVDAT 4 13-DEC-23 2WHF 1 REMARK LINK REVDAT 3 07-FEB-18 2WHF 1 SOURCE JRNL REVDAT 2 22-AUG-12 2WHF 1 KEYWDS JRNL REMARK HETSYN REVDAT 2 2 1 FORMUL REVDAT 1 14-JUL-09 2WHF 0 JRNL AUTH L.M.PODUST,H.OUELLET,J.P.VON KRIES,P.R.DE MONTELLANO JRNL TITL INTERACTION OF MYCOBACTERIUM TUBERCULOSIS CYP130 WITH JRNL TITL 2 HETEROCYCLIC ARYLAMINES. JRNL REF J. BIOL. CHEM. V. 284 25211 2009 JRNL REFN ESSN 1083-351X JRNL PMID 19605350 JRNL DOI 10.1074/JBC.M109.017632 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.4.0067 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 45902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5131 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3200 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 379 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3033 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 164 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.91000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.146 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.117 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3250 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4467 ; 1.656 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 410 ; 5.184 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 139 ;32.533 ;22.302 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 481 ;14.329 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;18.257 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 491 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2541 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2004 ; 1.376 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3249 ; 2.082 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1246 ; 3.128 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1213 ; 4.500 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3250 ; 1.939 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 164 ; 8.393 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3155 ; 5.932 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. DISORDERED REGIONS WERE OMITTED FROM THE STRUCTURE REMARK 4 REMARK 4 2WHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1290039697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51244 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 39.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2UUQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 0.1M NA ACETATE, PH 5.5; REMARK 280 3% ISOPROPYL ALCOHOL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.44850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.97100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.44850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.97100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 MET A 5 REMARK 465 ASP A 180 REMARK 465 GLY A 181 REMARK 465 ALA A 182 REMARK 465 THR A 183 REMARK 465 THR A 184 REMARK 465 SER A 405 REMARK 465 SER A 406 REMARK 465 ARG A 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLN A 40 CG CD OE1 NE2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 179 CG1 CG2 REMARK 470 ASP A 305 CG OD1 OD2 REMARK 470 ASP A 377 CG OD1 OD2 REMARK 470 ARG A 402 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2145 O HOH A 2146 2.02 REMARK 500 NH1 ARG A 41 OE1 GLU A 43 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2018 O HOH A 2018 2656 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 31 70.68 -162.92 REMARK 500 ARG A 41 61.79 -163.98 REMARK 500 LEU A 143 -53.65 -152.39 REMARK 500 ALA A 186 46.06 -147.82 REMARK 500 ALA A 209 -156.99 -119.37 REMARK 500 SER A 288 64.57 32.24 REMARK 500 SER A 288 65.83 30.69 REMARK 500 SER A 348 -161.37 59.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 450 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 354 SG REMARK 620 2 HEM A 450 NA 96.6 REMARK 620 3 HEM A 450 NB 88.0 90.1 REMARK 620 4 HEM A 450 NC 84.6 177.8 88.0 REMARK 620 5 HEM A 450 ND 94.6 88.5 177.2 93.3 REMARK 620 6 II4 A1405 N2 173.3 90.0 90.9 88.8 86.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE II4 A 1405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE II4 A 1406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2UVN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ECONAZOLE-BOUND CYP130 FROM MYCOBACTERIUM REMARK 900 TUBERCULOSIS REMARK 900 RELATED ID: 2UUQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CYP130 FROM MYCOBACTERIUM TUBERCULOSIS IN THE REMARK 900 LIGANF-FREE FORM REMARK 900 RELATED ID: 2WGY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE G243A MUTANT OF CYP130 FROM M. TUBERCULOSIS REMARK 900 RELATED ID: 2WH8 RELATED DB: PDB REMARK 900 INTERACTION OF MYCOBACTERIUM TUBERCULOSIS CYP130 WITH HETEROCYCLIC REMARK 900 ARYLAMINES REMARK 999 REMARK 999 SEQUENCE REMARK 999 6 HIS-TAG RESIDUES ARE ADDED AT THE N-TERMINUS. A 406 SER REMARK 999 AND A 407 ARG ARE INTRODUCED AT THE C-TERMINUS AS A RESULT REMARK 999 OF GENERATING XBAI SITE DBREF 2WHF A -5 1 PDB 2WHF 2WHF -5 1 DBREF 2WHF A 2 405 UNP Q11062 CP130_MYCTU 2 405 DBREF 2WHF A 406 407 PDB 2WHF 2WHF 406 407 SEQRES 1 A 413 MET HIS HIS HIS HIS HIS HIS THR SER VAL MET SER HIS SEQRES 2 A 413 GLU PHE GLN LEU ALA THR ALA GLU THR TRP PRO ASN PRO SEQRES 3 A 413 TRP PRO MET TYR ARG ALA LEU ARG ASP HIS ASP PRO VAL SEQRES 4 A 413 HIS HIS VAL VAL PRO PRO GLN ARG PRO GLU TYR ASP TYR SEQRES 5 A 413 TYR VAL LEU SER ARG HIS ALA ASP VAL TRP SER ALA ALA SEQRES 6 A 413 ARG ASP HIS GLN THR PHE SER SER ALA GLN GLY LEU THR SEQRES 7 A 413 VAL ASN TYR GLY GLU LEU GLU MET ILE GLY LEU HIS ASP SEQRES 8 A 413 THR PRO PRO MET VAL MET GLN ASP PRO PRO VAL HIS THR SEQRES 9 A 413 GLU PHE ARG LYS LEU VAL SER ARG GLY PHE THR PRO ARG SEQRES 10 A 413 GLN VAL GLU THR VAL GLU PRO THR VAL ARG LYS PHE VAL SEQRES 11 A 413 VAL GLU ARG LEU GLU LYS LEU ARG ALA ASN GLY GLY GLY SEQRES 12 A 413 ASP ILE VAL THR GLU LEU PHE LYS PRO LEU PRO SER MET SEQRES 13 A 413 VAL VAL ALA HIS TYR LEU GLY VAL PRO GLU GLU ASP TRP SEQRES 14 A 413 THR GLN PHE ASP GLY TRP THR GLN ALA ILE VAL ALA ALA SEQRES 15 A 413 ASN ALA VAL ASP GLY ALA THR THR GLY ALA LEU ASP ALA SEQRES 16 A 413 VAL GLY SER MET MET ALA TYR PHE THR GLY LEU ILE GLU SEQRES 17 A 413 ARG ARG ARG THR GLU PRO ALA ASP ASP ALA ILE SER HIS SEQRES 18 A 413 LEU VAL ALA ALA GLY VAL GLY ALA ASP GLY ASP THR ALA SEQRES 19 A 413 GLY THR LEU SER ILE LEU ALA PHE THR PHE THR MET VAL SEQRES 20 A 413 THR GLY GLY ASN ASP THR VAL THR GLY MET LEU GLY GLY SEQRES 21 A 413 SER MET PRO LEU LEU HIS ARG ARG PRO ASP GLN ARG ARG SEQRES 22 A 413 LEU LEU LEU ASP ASP PRO GLU GLY ILE PRO ASP ALA VAL SEQRES 23 A 413 GLU GLU LEU LEU ARG LEU THR SER PRO VAL GLN GLY LEU SEQRES 24 A 413 ALA ARG THR THR THR ARG ASP VAL THR ILE GLY ASP THR SEQRES 25 A 413 THR ILE PRO ALA GLY ARG ARG VAL LEU LEU LEU TYR GLY SEQRES 26 A 413 SER ALA ASN ARG ASP GLU ARG GLN TYR GLY PRO ASP ALA SEQRES 27 A 413 ALA GLU LEU ASP VAL THR ARG CYS PRO ARG ASN ILE LEU SEQRES 28 A 413 THR PHE SER HIS GLY ALA HIS HIS CYS LEU GLY ALA ALA SEQRES 29 A 413 ALA ALA ARG MET GLN CYS ARG VAL ALA LEU THR GLU LEU SEQRES 30 A 413 LEU ALA ARG CYS PRO ASP PHE GLU VAL ALA GLU SER ARG SEQRES 31 A 413 ILE VAL TRP SER GLY GLY SER TYR VAL ARG ARG PRO LEU SEQRES 32 A 413 SER VAL PRO PHE ARG VAL THR SER SER ARG HET HEM A 450 43 HET II4 A1405 17 HET II4 A1406 17 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM II4 1-(3-METHYLPHENYL)-1H-BENZIMIDAZOL-5-AMINE HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 II4 2(C14 H13 N3) FORMUL 5 HOH *164(H2 O) HELIX 1 1 PRO A 20 ASP A 31 1 12 HELIX 2 2 ARG A 41 ASP A 45 5 5 HELIX 3 3 ARG A 51 ASP A 61 1 11 HELIX 4 4 PRO A 88 GLN A 92 5 5 HELIX 5 5 PRO A 95 ARG A 106 1 12 HELIX 6 6 THR A 109 ASN A 134 1 26 HELIX 7 7 ASP A 138 LEU A 143 1 6 HELIX 8 8 LYS A 145 LEU A 156 1 12 HELIX 9 9 PRO A 159 GLU A 161 5 3 HELIX 10 10 ASP A 162 ASP A 167 1 6 HELIX 11 11 TRP A 169 VAL A 179 1 11 HELIX 12 12 SER A 192 THR A 198 1 7 HELIX 13 13 LEU A 200 ARG A 205 1 6 HELIX 14 14 ASP A 211 ALA A 219 1 9 HELIX 15 15 THR A 230 THR A 242 1 13 HELIX 16 16 SER A 255 ARG A 261 1 7 HELIX 17 17 ARG A 262 ASP A 272 1 11 HELIX 18 18 ILE A 276 SER A 288 1 13 HELIX 19 19 SER A 320 ASP A 324 5 5 HELIX 20 20 ALA A 357 CYS A 375 1 19 HELIX 21 21 GLU A 382 ILE A 385 5 4 SHEET 1 AA 5 VAL A 33 VAL A 36 0 SHEET 2 AA 5 TYR A 46 LEU A 49 -1 O TYR A 46 N VAL A 36 SHEET 3 AA 5 ARG A 313 LEU A 316 1 O ARG A 313 N TYR A 47 SHEET 4 AA 5 ALA A 294 THR A 297 -1 O ARG A 295 N VAL A 314 SHEET 5 AA 5 PHE A 65 SER A 66 -1 O SER A 66 N THR A 296 SHEET 1 AB 2 VAL A 301 THR A 302 0 SHEET 2 AB 2 THR A 307 ILE A 308 -1 O ILE A 308 N VAL A 301 SHEET 1 AC 2 PHE A 378 VAL A 380 0 SHEET 2 AC 2 PHE A 401 VAL A 403 -1 O ARG A 402 N GLU A 379 SHEET 1 AD 2 VAL A 386 TRP A 387 0 SHEET 2 AD 2 PRO A 396 SER A 398 -1 N LEU A 397 O VAL A 386 LINK SG CYS A 354 FE HEM A 450 1555 1555 2.28 LINK FE HEM A 450 N2 II4 A1405 1555 1555 2.12 CISPEP 1 PRO A 94 PRO A 95 0 6.32 SITE 1 AC1 19 LEU A 71 MET A 89 VAL A 90 HIS A 97 SITE 2 AC1 19 ARG A 101 MET A 240 GLY A 244 THR A 247 SITE 3 AC1 19 LEU A 293 ARG A 295 TYR A 318 THR A 346 SITE 4 AC1 19 PHE A 347 SER A 348 HIS A 352 CYS A 354 SITE 5 AC1 19 GLY A 356 II4 A1405 HOH A2039 SITE 1 AC2 8 LEU A 71 VAL A 90 MET A 91 GLY A 243 SITE 2 AC2 8 VAL A 290 LEU A 293 HEM A 450 II4 A1406 SITE 1 AC3 8 PRO A 88 ASN A 177 LEU A 187 ALA A 235 SITE 2 AC3 8 PHE A 238 THR A 239 THR A 242 II4 A1405 CRYST1 160.897 53.942 44.047 90.00 96.73 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006215 0.000000 0.000733 0.00000 SCALE2 0.000000 0.018538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022861 0.00000