HEADER HYDROLASE 07-MAY-09 2WI0 TITLE DIPEPTIDE INHIBITORS OF THERMOLYSIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 5 EC: 3.4.24.27; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE DI-PEPTIDE LW IS BOUND TO THE PROTEIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 3 ORGANISM_TAXID: 1427; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.A.LUND,I.LEIROS,H.-K.S.LEIROS REVDAT 4 13-DEC-23 2WI0 1 REMARK LINK REVDAT 3 20-JUN-18 2WI0 1 REMARK LINK REVDAT 2 11-MAY-11 2WI0 1 COMPND KEYWDS REMARK FORMUL REVDAT 2 2 1 ATOM REVDAT 1 12-MAY-10 2WI0 0 JRNL AUTH B.A.LUND,I.LEIROS,H.-K.S.LEIROS JRNL TITL DIPEPTIDE INHIBITORS OF THERMOLYSIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0021 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 21829 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1570 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 327 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : 0.31000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.15000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.102 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.489 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2571 ; 0.014 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3511 ; 1.321 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 5.750 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;30.523 ;24.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 364 ;12.213 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.165 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2049 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1371 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1810 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 272 ; 0.226 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 18 ; 0.093 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.246 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 33 ; 0.252 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1640 ; 0.680 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2572 ; 1.057 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1089 ; 1.861 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 939 ; 2.515 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WI0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1290039745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23837 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2TLX REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.53333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.06667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 63.80000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 106.33333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.26667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.53333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 85.06667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 106.33333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 63.80000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.26667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2013 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2016 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2180 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2181 LIES ON A SPECIAL POSITION. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 128 CG CD OE1 NE2 REMARK 480 LYS A 182 CG CD CE NZ REMARK 480 LYS A 210 CE NZ REMARK 480 GLN A 225 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C LEU A 1001 N TRP A 1002 1.33 REMARK 500 O HOH A 2250 O HOH A 2251 1.70 REMARK 500 O HOH A 2125 O HOH A 2244 1.78 REMARK 500 O HOH A 2006 O HOH A 2007 1.96 REMARK 500 O HOH A 2223 O HOH A 2225 1.98 REMARK 500 O HOH A 2027 O HOH A 2065 2.09 REMARK 500 O HOH A 2259 O HOH A 2267 2.10 REMARK 500 O HOH A 2121 O HOH A 2233 2.11 REMARK 500 O HOH A 2043 O HOH A 2098 2.12 REMARK 500 O HOH A 2280 O HOH A 2281 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2066 O HOH A 2110 5564 1.60 REMARK 500 O HOH A 2045 O HOH A 2256 8565 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 210 CD LYS A 210 CE 0.507 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 128 CA - CB - CG ANGL. DEV. = 26.8 DEGREES REMARK 500 LYS A 210 CG - CD - CE ANGL. DEV. = -23.7 DEGREES REMARK 500 GLN A 225 OE1 - CD - NE2 ANGL. DEV. = -39.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 26 -61.04 68.45 REMARK 500 LEU A 30 78.75 -69.70 REMARK 500 SER A 92 -171.94 58.10 REMARK 500 SER A 107 -162.35 62.57 REMARK 500 ASN A 111 43.42 -85.94 REMARK 500 THR A 152 -104.51 -112.00 REMARK 500 LEU A 155 119.68 -38.59 REMARK 500 ASN A 159 -142.14 57.15 REMARK 500 THR A 194 75.42 45.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN A 225 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2064 DISTANCE = 7.26 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LEU A 1001 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1320 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 ASP A 57 OD2 51.6 REMARK 620 3 ASP A 59 OD1 121.9 70.4 REMARK 620 4 GLN A 61 O 92.1 86.1 87.0 REMARK 620 5 HOH A2100 O 83.7 86.9 90.5 172.9 REMARK 620 6 HOH A2103 O 163.2 142.6 72.6 97.4 88.1 REMARK 620 7 HOH A2119 O 82.4 132.3 154.1 83.2 101.7 85.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1318 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 138 OD2 REMARK 620 2 GLU A 177 OE1 81.7 REMARK 620 3 GLU A 177 OE2 128.4 47.5 REMARK 620 4 ASP A 185 OD1 156.0 121.8 74.3 REMARK 620 5 GLU A 187 O 84.9 148.7 142.2 76.7 REMARK 620 6 GLU A 190 OE1 80.9 127.0 119.8 80.3 78.0 REMARK 620 7 GLU A 190 OE2 99.5 82.0 69.8 80.5 128.2 52.5 REMARK 620 8 HOH A2216 O 99.7 78.5 80.4 90.9 76.1 153.9 150.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1317 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 142 NE2 REMARK 620 2 HIS A 146 NE2 104.2 REMARK 620 3 GLU A 166 OE2 125.3 92.9 REMARK 620 4 HOH A2326 O 114.6 121.4 98.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1319 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 177 OE2 REMARK 620 2 ASN A 183 O 87.9 REMARK 620 3 ASP A 185 OD2 88.3 91.8 REMARK 620 4 GLU A 190 OE2 87.3 171.5 81.0 REMARK 620 5 HOH A2220 O 85.7 89.4 173.9 97.3 REMARK 620 6 HOH A2221 O 174.9 93.1 96.6 92.4 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1321 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 193 O REMARK 620 2 THR A 194 O 77.4 REMARK 620 3 THR A 194 OG1 77.5 71.7 REMARK 620 4 ILE A 197 O 154.8 79.9 105.4 REMARK 620 5 ASP A 200 OD1 119.9 132.0 69.9 83.6 REMARK 620 6 HOH A2219 O 84.3 151.0 126.2 111.7 76.8 REMARK 620 7 HOH A2226 O 82.7 86.9 153.4 85.5 136.3 68.4 REMARK 620 N 1 2 3 4 5 6 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LEU A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRP A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 1324 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1LNA RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH COBALT REMARK 900 RELATED ID: 1PE5 RELATED DB: PDB REMARK 900 THERMOLYSIN WITH TRICYCLIC INHIBITOR REMARK 900 RELATED ID: 1LNE RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH CADMIUM REMARK 900 RELATED ID: 1HYT RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH BENZYLSUCCINIC ACID (2(S)-BENZYL-3- REMARK 900 CARBOXYPROPIONIC ACID) REMARK 900 RELATED ID: 1OS0 RELATED DB: PDB REMARK 900 THERMOLYSIN WITH AN ALPHA-AMINO PHOSPHINIC INHIBITOR REMARK 900 RELATED ID: 2TLX RELATED DB: PDB REMARK 900 THERMOLYSIN (NATIVE) REMARK 900 RELATED ID: 1KKK RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH Z-L-ASPARTIC ACID (BENZYLOXYCARBONYL-L- REMARK 900 ASPARTIC ACID) REMARK 900 RELATED ID: 1FJQ RELATED DB: PDB REMARK 900 THERMOLYSIN (70% ACETONE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1FJ3 RELATED DB: PDB REMARK 900 THERMOLYSIN (50% ACETONE SOAKED) REMARK 900 RELATED ID: 1FJT RELATED DB: PDB REMARK 900 THERMOLYSIN (50% ACETONITRILE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1KS7 RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH Z-D-ASPARTIC ACID (BENZYLOXYCARBONYL-D- REMARK 900 ASPARTIC ACID) REMARK 900 RELATED ID: 5TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (60% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 1PE7 RELATED DB: PDB REMARK 900 THERMOLYSIN WITH BICYCLIC INHIBITOR REMARK 900 RELATED ID: 8TLN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH VAL-LYS DIPEPTIDE REMARK 900 RELATED ID: 1KEI RELATED DB: PDB REMARK 900 THERMOLYSIN (SUBSTRATE-FREE) REMARK 900 RELATED ID: 2A7G RELATED DB: PDB REMARK 900 ON THE ROUTINE USE OF SOFT X-RAYS IN MACROMOLECULARCRYSTALLOGRAPHY, REMARK 900 PART III- THE OPTIMAL DATA COLLECTIONWAVELENGTH REMARK 900 RELATED ID: 4TMN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH CBZ-PHE==P==-LEU- ALA (ZFPLA) REMARK 900 RELATED ID: 3TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (10% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 1FJV RELATED DB: PDB REMARK 900 THERMOLYSIN (60% ACETONITRILE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1LNB RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH IRON REMARK 900 RELATED ID: 1TLX RELATED DB: PDB REMARK 900 THERMOLYSIN (NATIVE) REMARK 900 RELATED ID: 1FJW RELATED DB: PDB REMARK 900 THERMOLYSIN (50 MM PHENOL SOAKED) REMARK 900 RELATED ID: 1KJO RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH Z-L-THREONINE (BENZYLOXYCARBONYL-L- REMARK 900 THREONINE) REMARK 900 RELATED ID: 1FJU RELATED DB: PDB REMARK 900 THERMOLYSIN (80% ACETONITRILE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1KRO RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH Z-D-THREONINE (BENZYLOXYCARBONYL-D- REMARK 900 THREONINE) REMARK 900 RELATED ID: 1FJO RELATED DB: PDB REMARK 900 THERMOLYSIN (60% ACETONE SOAKED CRYSTALS) REMARK 900 RELATED ID: 1TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (2% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 3TMN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH VAL-TRP (VW) REMARK 900 RELATED ID: 6TMN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH CBZ-GLY==P==-(O)- LEU-LEU (ZG==P==(O)LL) REMARK 900 RELATED ID: 1LND RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH ZINC REMARK 900 RELATED ID: 1THL RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH A NOVEL GLUTARAMIDE DERIVATIVE, N-(1- REMARK 900 (2(R,S)-CARBOXY-4- PHENYLBUTYL) CYCLOPENTYLCARBONYL)-(S)-TRYPTOPHAN REMARK 900 RELATED ID: 7TLN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH CH2CO(N-OH)LEU-OCH3 REMARK 900 RELATED ID: 7TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (90% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 1LNF RELATED DB: PDB REMARK 900 THERMOLYSIN REMARK 900 RELATED ID: 8TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (100% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 1Z9G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THERMOLYSIN COMPLEXED WITHTHE REMARK 900 INHIBITOR (R)-RETRO-THIORPHAN REMARK 900 RELATED ID: 1Y3G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A SILANEDIOL PROTEASE INHIBITOR BOUNDTO REMARK 900 THERMOLYSIN REMARK 900 RELATED ID: 1KJP RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH Z-L-GLUTAMIC ACID (BENZYLOXYCARBONYL-L- REMARK 900 GLUTAMIC ACID) REMARK 900 RELATED ID: 1KR6 RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH Z-D-GLUTAMIC ACID (BENZYLOXYCARBONYL-D- REMARK 900 GLUTAMIC ACID) REMARK 900 RELATED ID: 1QF0 RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH (2-SULPHANYL-3- PHENYLPROPANOYL)-PHE- REMARK 900 TYR. PARAMETERS FOR ZN- BIDENTATION OF MERCAPTOACYLDIPEPTIDES IN REMARK 900 METALLOENDOPEPTIDASE REMARK 900 RELATED ID: 1PE8 RELATED DB: PDB REMARK 900 THERMOLYSIN WITH MONOCYCLIC INHIBITOR REMARK 900 RELATED ID: 1KL6 RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH Z-L-ALANINE (BENZYLOXYCARBONYL-L-ALANINE) REMARK 900 RELATED ID: 5TLN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH HONH-BENZYLMALONYL-L -ALANYLGLYCINE-P- REMARK 900 NITROANILIDE REMARK 900 RELATED ID: 4TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (25% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 6TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (60% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 4TLN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH L-LEUCYL-HYDROXYLAMINE REMARK 900 RELATED ID: 2TMN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH N-PHOSPHORYL-L- LEUCINAMIDE (P-LEU-NH2) REMARK 900 RELATED ID: 5TMN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH CBZ-GLY==P==-LEU- LEU (ZG==P==LL) REMARK 900 RELATED ID: 1KTO RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH Z-D-ALANINE (BENZYLOXYCARBONYL-D-ALANINE) REMARK 900 RELATED ID: 1LNC RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH MANGANESE REMARK 900 RELATED ID: 1TRL RELATED DB: PDB REMARK 900 THERMOLYSIN FRAGMENT 255 - 316 (NMR, 8 STRUCTURES) REMARK 900 RELATED ID: 1QF2 RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH (2-SULPHANYL-3- PHENYLPROPANOYL)-GLY-(5- REMARK 900 PHENYLPROLINE). PARAMETERS FOR ZN- MONODENTATION OF REMARK 900 MERCAPTOACYLDIPEPTIDES IN METALLOENDOPEPTIDASE REMARK 900 RELATED ID: 1TMN RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH N-(1-CARBOXY-3- PHENYLPROPYL)-L-LEUCYL-L- REMARK 900 TRYPTOPHAN REMARK 900 RELATED ID: 1L3F RELATED DB: PDB REMARK 900 THERMOLYSIN IN THE ABSENCE OF SUBSTRATE HAS AN OPEN CONFORMATION REMARK 900 RELATED ID: 1GXW RELATED DB: PDB REMARK 900 THE 2.2 A RESOLUTION STRUCTURE OF THERMOLYSIN CRYSTALLIZED IN REMARK 900 PRESENCE OF POTASSIUM THIOCYANATE REMARK 900 RELATED ID: 2TLI RELATED DB: PDB REMARK 900 THERMOLYSIN (5% ISOPROPANOL SOAKED CRYSTALS) REMARK 900 RELATED ID: 1ZDP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THERMOLYSIN COMPLEXED WITHTHE REMARK 900 INHIBITOR (S)-THIORPHAN REMARK 900 RELATED ID: 1TLP RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEX WITH PHOSPHORAMIDON REMARK 900 RELATED ID: 1QF1 RELATED DB: PDB REMARK 900 THERMOLYSIN COMPLEXED WITH (2- SULPHANYLHEPTANOYL)-PHE-ALA. REMARK 900 PARAMETERS FOR ZN -BIDENTATION OF MERCAPTOACYLDIPEPTIDES IN REMARK 900 METALLOENDOPEPTIDASE REMARK 900 RELATED ID: 2WHZ RELATED DB: PDB REMARK 900 DIPEPTIDE INHIBITORS OF THERMOLYSIN DBREF 2WI0 A 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 A 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 A 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 A 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 A 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 A 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 A 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 A 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 A 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 A 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 A 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 A 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 A 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 A 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 A 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 A 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 A 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 A 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 A 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 A 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 A 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 A 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 A 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 A 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 A 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 A 316 VAL GLY VAL LYS HET LEU A1001 8 HET TRP A1002 15 HET ZN A1317 1 HET CA A1318 1 HET CA A1319 1 HET CA A1320 1 HET CA A1321 1 HET PEG A1324 7 HETNAM LEU LEUCINE HETNAM TRP TRYPTOPHAN HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 2 LEU C6 H13 N O2 FORMUL 3 TRP C11 H12 N2 O2 FORMUL 4 ZN ZN 2+ FORMUL 5 CA 4(CA 2+) FORMUL 9 PEG C4 H10 O3 FORMUL 10 HOH *327(H2 O) HELIX 1 1 ALA A 64 TYR A 66 5 3 HELIX 2 2 ASP A 67 ASN A 89 1 23 HELIX 3 3 PRO A 132 GLY A 135 5 4 HELIX 4 4 GLY A 136 THR A 152 1 17 HELIX 5 5 GLN A 158 ASN A 181 1 24 HELIX 6 6 ASP A 207 GLY A 212 5 6 HELIX 7 7 HIS A 216 ARG A 220 5 5 HELIX 8 8 THR A 224 GLY A 247 1 24 HELIX 9 9 GLY A 259 TYR A 274 1 16 HELIX 10 10 ASN A 280 GLY A 297 1 18 HELIX 11 11 SER A 300 VAL A 313 1 14 SHEET 1 AA 5 ALA A 56 ASP A 57 0 SHEET 2 AA 5 TYR A 28 TYR A 29 -1 O TYR A 28 N ASP A 57 SHEET 3 AA 5 GLN A 17 TYR A 24 -1 O THR A 23 N TYR A 29 SHEET 4 AA 5 THR A 4 ARG A 11 -1 O THR A 4 N TYR A 24 SHEET 5 AA 5 GLN A 61 PHE A 62 1 O PHE A 62 N ARG A 11 SHEET 1 AB 5 GLN A 31 ASP A 32 0 SHEET 2 AB 5 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AB 5 ILE A 100 TYR A 106 1 O ILE A 100 N PHE A 40 SHEET 4 AB 5 MET A 120 GLY A 123 1 O MET A 120 N SER A 103 SHEET 5 AB 5 ALA A 113 TRP A 115 -1 O PHE A 114 N VAL A 121 SHEET 1 AC 3 GLN A 31 ASP A 32 0 SHEET 2 AC 3 ILE A 39 ASP A 43 -1 O ILE A 39 N ASP A 32 SHEET 3 AC 3 SER A 53 LEU A 54 -1 O SER A 53 N ASP A 43 SHEET 1 AD 2 GLU A 187 ILE A 188 0 SHEET 2 AD 2 ARG A 203 SER A 204 -1 O ARG A 203 N ILE A 188 SHEET 1 AE 2 GLY A 248 HIS A 250 0 SHEET 2 AE 2 VAL A 253 VAL A 255 -1 O VAL A 253 N HIS A 250 LINK OD1 ASP A 57 CA CA A1320 1555 1555 2.33 LINK OD2 ASP A 57 CA CA A1320 1555 1555 2.63 LINK OD1 ASP A 59 CA CA A1320 1555 1555 2.46 LINK O GLN A 61 CA CA A1320 1555 1555 2.32 LINK OD2 ASP A 138 CA CA A1318 1555 1555 2.45 LINK NE2 HIS A 142 ZN ZN A1317 1555 1555 2.08 LINK NE2 HIS A 146 ZN ZN A1317 1555 1555 2.07 LINK OE2 GLU A 166 ZN ZN A1317 1555 1555 1.96 LINK OE1 GLU A 177 CA CA A1318 1555 1555 2.50 LINK OE2 GLU A 177 CA CA A1318 1555 1555 2.92 LINK OE2 GLU A 177 CA CA A1319 1555 1555 2.36 LINK O ASN A 183 CA CA A1319 1555 1555 2.30 LINK OD1 ASP A 185 CA CA A1318 1555 1555 2.51 LINK OD2 ASP A 185 CA CA A1319 1555 1555 2.32 LINK O GLU A 187 CA CA A1318 1555 1555 2.33 LINK OE1 GLU A 190 CA CA A1318 1555 1555 2.44 LINK OE2 GLU A 190 CA CA A1318 1555 1555 2.55 LINK OE2 GLU A 190 CA CA A1319 1555 1555 2.18 LINK O TYR A 193 CA CA A1321 1555 1555 2.40 LINK O THR A 194 CA CA A1321 1555 1555 2.38 LINK OG1 THR A 194 CA CA A1321 1555 1555 2.34 LINK O ILE A 197 CA CA A1321 1555 1555 2.36 LINK OD1 ASP A 200 CA CA A1321 1555 1555 2.35 LINK ZN ZN A1317 O HOH A2326 1555 1555 2.24 LINK CA CA A1318 O HOH A2216 1555 1555 2.38 LINK CA CA A1319 O HOH A2220 1555 1555 2.36 LINK CA CA A1319 O HOH A2221 1555 1555 2.46 LINK CA CA A1320 O HOH A2100 1555 1555 2.33 LINK CA CA A1320 O HOH A2103 1555 1555 2.50 LINK CA CA A1320 O HOH A2119 1555 1555 2.44 LINK CA CA A1321 O HOH A2219 1555 1555 2.32 LINK CA CA A1321 O HOH A2226 1555 1555 2.40 CISPEP 1 LEU A 50 PRO A 51 0 0.25 SITE 1 AC1 4 HIS A 142 HIS A 146 GLU A 166 HOH A2326 SITE 1 AC2 6 ASP A 138 GLU A 177 ASP A 185 GLU A 187 SITE 2 AC2 6 GLU A 190 HOH A2216 SITE 1 AC3 6 GLU A 177 ASN A 183 ASP A 185 GLU A 190 SITE 2 AC3 6 HOH A2220 HOH A2221 SITE 1 AC4 6 ASP A 57 ASP A 59 GLN A 61 HOH A2100 SITE 2 AC4 6 HOH A2103 HOH A2119 SITE 1 AC5 6 TYR A 193 THR A 194 ILE A 197 ASP A 200 SITE 2 AC5 6 HOH A2219 HOH A2226 SITE 1 AC6 8 ASN A 112 ALA A 113 GLU A 143 LEU A 202 SITE 2 AC6 8 ARG A 203 HIS A 231 TRP A1002 HOH A2326 SITE 1 AC7 8 ASN A 111 ASN A 112 PHE A 130 LEU A 202 SITE 2 AC7 8 HIS A 231 LEU A1001 PEG A1324 HOH A2327 SITE 1 AC8 7 GLY A 109 TYR A 110 ASN A 111 ASN A 112 SITE 2 AC8 7 GLN A 158 ASN A 227 TRP A1002 CRYST1 92.710 92.710 127.600 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010786 0.006227 0.000000 0.00000 SCALE2 0.000000 0.012455 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007837 0.00000