HEADER METAL TRANSPORT 09-MAY-09 2WIB TITLE CRYSTAL STRUCTURES OF THE N-TERMINAL INTRACELLULAR DOMAIN OF FEOB FROM TITLE 2 KLEBSIELLA PNEUMONIAE IN GDP BINDING STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERROUS IRON TRANSPORT PROTEIN B; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: N-TERMINAL INTRACELLULAR DOMAIN, RESIDUES 1-267; COMPND 5 SYNONYM: FEOB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS SIGNAL TRANSDUCTION, FERROUS IRON TRANSPORT, MEMBRANE PROTEIN, METAL KEYWDS 2 TRANSPORT, G PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.-W.HUNG,Y.-W.CHANG,J.-H.CHEN,Y.-C.CHEN,Y.-J.SUN,C.-D.HSIAO,T.- AUTHOR 2 H.HUANG REVDAT 2 01-MAY-24 2WIB 1 REMARK REVDAT 1 19-MAY-10 2WIB 0 JRNL AUTH K.-W.HUNG,Y.-W.CHANG,E.T.ENG,J.-H.CHEN,Y.-C.CHEN,Y.-J.SUN, JRNL AUTH 2 C.-D.HSIAO,G.DONG,K.A.SPASOV,V.M.UNGER,T.-H.HUANG JRNL TITL STRUCTURAL FOLD, CONSERVATION AND FE(II) BINDING OF THE JRNL TITL 2 INTRACELLULAR DOMAIN OF PROKARYOTE FEOB. JRNL REF J.STRUCT.BIOL. V. 170 501 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 20123128 JRNL DOI 10.1016/J.JSB.2010.01.017 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.CHEN,H.CHANG,Y.LAI,C.PAN,S.TSAI,H.PENG REMARK 1 TITL SEQUENCING AND ANALYSIS OF THE LARGE VIRULENCE PLASMID PLVPK REMARK 1 TITL 2 OF KLEBSIELLA PNEUMONIAE CG43. REMARK 1 REF GENE V. 337 189 2004 REMARK 1 REFN ISSN 0378-1119 REMARK 1 PMID 15276215 REMARK 1 DOI 10.1016/J.GENE.2004.05.008 REMARK 2 REMARK 2 RESOLUTION. 2.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 60552.900 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 82.4 REMARK 3 NUMBER OF REFLECTIONS : 17295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 849 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.70 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2135 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 101 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3666 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.68000 REMARK 3 B22 (A**2) : -6.88000 REMARK 3 B33 (A**2) : 17.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.034 REMARK 3 BOND ANGLES (DEGREES) : 3.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 4.370 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.220 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.100 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.680 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.430 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 43.71 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GDP.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GDP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED SIDECHAINS OF REMARK 3 RESIDUES K3, V36, I66, S67, S68, Q69, E74, Q75, E126, R131, R152, REMARK 3 R154, E173, H176, L187, Q190, Q191, S193, R202, I213, Y214, REMARK 3 R216, D221, D224, K225, D227, I228, L230, L233, S234, E236, I237, REMARK 3 D238, N261 OF CHAIN A, AND R29, N32, V36, T37, V38, E39, E42, REMARK 3 T65, I66, L72, E74, Q75, I76, R100, R131, R152, R154, D171, E173, REMARK 3 H176, R183, Q190, Q191, R202, I213, Y214, S215, R216, Y218, REMARK 3 D221, D224, K225, L226, I228, L230, L233, S234, D235, E236, I237, REMARK 3 D238, Y249, N261, T262 OF CHAIN B ARE DISORDERED. FULL RESIDUES REMARK 3 OF T262 TO P267 IN CHAIN A AND S67 TO S71, L263 TO P267 IN CHAIN REMARK 3 B ARE DISORDERED. REMARK 4 REMARK 4 2WIB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1290039750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19651 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.560 REMARK 200 RESOLUTION RANGE LOW (A) : 19.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: STRUCTURE OF FEOB IN GMPPNP STATE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.5, 30% PEG8000, REMARK 280 150 MM (NH4)2SO4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 43.27600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 92.34400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.27600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 92.34400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 262 REMARK 465 LEU A 263 REMARK 465 THR A 264 REMARK 465 ALA A 265 REMARK 465 GLU A 266 REMARK 465 PRO A 267 REMARK 465 SER B 67 REMARK 465 SER B 68 REMARK 465 GLN B 69 REMARK 465 THR B 70 REMARK 465 SER B 71 REMARK 465 LEU B 263 REMARK 465 THR B 264 REMARK 465 ALA B 265 REMARK 465 GLU B 266 REMARK 465 PRO B 267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 VAL A 36 CG1 CG2 REMARK 470 ILE A 66 CG1 CG2 CD1 REMARK 470 SER A 67 OG REMARK 470 SER A 68 OG REMARK 470 GLN A 69 CG CD OE1 NE2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 GLN A 75 CG CD OE1 NE2 REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 173 CG CD OE1 OE2 REMARK 470 HIS A 176 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 187 CG CD1 CD2 REMARK 470 GLN A 190 CG CD OE1 NE2 REMARK 470 GLN A 191 CG CD OE1 NE2 REMARK 470 SER A 193 OG REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 213 CG1 CG2 CD1 REMARK 470 TYR A 214 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 221 CG OD1 OD2 REMARK 470 ASP A 224 CG OD1 OD2 REMARK 470 LYS A 225 CG CD CE NZ REMARK 470 ASP A 227 CG OD1 OD2 REMARK 470 ILE A 228 CG1 CG2 CD1 REMARK 470 LEU A 230 CG CD1 CD2 REMARK 470 LEU A 233 CG CD1 CD2 REMARK 470 SER A 234 OG REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 ILE A 237 CG1 CG2 CD1 REMARK 470 ASP A 238 CG OD1 OD2 REMARK 470 ASN A 261 CG OD1 ND2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 32 CG OD1 ND2 REMARK 470 VAL B 36 CG1 CG2 REMARK 470 THR B 37 OG1 CG2 REMARK 470 VAL B 38 CG1 CG2 REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 THR B 65 OG1 CG2 REMARK 470 ILE B 66 CG1 CG2 CD1 REMARK 470 LEU B 72 CG CD1 CD2 REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 GLN B 75 CG CD OE1 NE2 REMARK 470 ILE B 76 CG1 CG2 CD1 REMARK 470 ASP B 85 CG OD1 OD2 REMARK 470 ARG B 100 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 152 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 154 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 165 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 171 CG OD1 OD2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 HIS B 176 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 183 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 190 CG CD OE1 NE2 REMARK 470 GLN B 191 CG CD OE1 NE2 REMARK 470 ARG B 202 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 213 CG1 CG2 CD1 REMARK 470 TYR B 214 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 215 OG REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 218 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 221 CG OD1 OD2 REMARK 470 ASP B 224 CG OD1 OD2 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 LEU B 226 CG CD1 CD2 REMARK 470 ILE B 228 CG1 CG2 CD1 REMARK 470 LEU B 230 CG CD1 CD2 REMARK 470 LEU B 233 CG CD1 CD2 REMARK 470 SER B 234 OG REMARK 470 ASP B 235 CG OD1 OD2 REMARK 470 GLU B 236 CG CD OE1 OE2 REMARK 470 ILE B 237 CG1 CG2 CD1 REMARK 470 ASP B 238 CG OD1 OD2 REMARK 470 TYR B 249 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 261 CG OD1 ND2 REMARK 470 THR B 262 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN B 128 O HOH B 2016 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 38 CB VAL A 38 CG2 0.142 REMARK 500 GLU A 42 CB GLU A 42 CG -0.153 REMARK 500 ASP A 49 CB ASP A 49 CG 0.159 REMARK 500 GLU A 110 CD GLU A 110 OE1 0.071 REMARK 500 CYS A 115 CB CYS A 115 SG -0.126 REMARK 500 GLU A 126 CA GLU A 126 CB 0.154 REMARK 500 TYR A 177 CZ TYR A 177 CE2 0.108 REMARK 500 GLU A 236 N GLU A 236 CA 0.199 REMARK 500 ASP B 49 CB ASP B 49 CG 0.147 REMARK 500 CYS B 78 CB CYS B 78 SG -0.118 REMARK 500 CYS B 143 CB CYS B 143 SG 0.104 REMARK 500 GLY B 220 CA GLY B 220 C -0.097 REMARK 500 ILE B 237 N ILE B 237 CA 0.225 REMARK 500 ALA B 253 CA ALA B 253 CB -0.132 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 LEU A 72 O - C - N ANGL. DEV. = -15.6 DEGREES REMARK 500 ASP A 85 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES REMARK 500 THR A 105 CA - CB - CG2 ANGL. DEV. = -8.9 DEGREES REMARK 500 LEU A 111 CB - CG - CD1 ANGL. DEV. = -13.7 DEGREES REMARK 500 GLN A 129 O - C - N ANGL. DEV. = -12.6 DEGREES REMARK 500 ASP A 133 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ASP A 221 O - C - N ANGL. DEV. = -12.8 DEGREES REMARK 500 GLU A 236 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 TRP B 33 C - N - CA ANGL. DEV. = -22.0 DEGREES REMARK 500 ALA B 34 C - N - CA ANGL. DEV. = 15.9 DEGREES REMARK 500 VAL B 38 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 LEU B 82 CB - CG - CD1 ANGL. DEV. = -11.9 DEGREES REMARK 500 ILE B 134 CG1 - CB - CG2 ANGL. DEV. = -13.4 DEGREES REMARK 500 ARG B 140 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 VAL B 149 CB - CA - C ANGL. DEV. = 11.7 DEGREES REMARK 500 LEU B 172 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 GLU B 173 C - N - CA ANGL. DEV. = -15.2 DEGREES REMARK 500 GLU B 173 CB - CA - C ANGL. DEV. = 18.6 DEGREES REMARK 500 GLU B 173 CA - C - N ANGL. DEV. = 17.4 DEGREES REMARK 500 GLU B 173 O - C - N ANGL. DEV. = -22.1 DEGREES REMARK 500 LEU B 182 CB - CG - CD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG B 201 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 GLY B 220 N - CA - C ANGL. DEV. = 20.9 DEGREES REMARK 500 GLY B 220 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP B 221 O - C - N ANGL. DEV. = -10.6 DEGREES REMARK 500 ILE B 237 N - CA - C ANGL. DEV. = -22.2 DEGREES REMARK 500 ILE B 237 O - C - N ANGL. DEV. = -14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 31.21 74.00 REMARK 500 ALA A 34 120.84 -20.63 REMARK 500 THR A 70 -75.03 -40.75 REMARK 500 SER A 71 166.57 165.10 REMARK 500 ASP A 73 -79.66 -43.51 REMARK 500 GLU A 74 -16.77 -43.22 REMARK 500 ASN A 97 59.33 -145.17 REMARK 500 ASP A 235 -90.22 -75.17 REMARK 500 ILE A 237 -90.64 -67.40 REMARK 500 ALA A 258 -37.99 -38.52 REMARK 500 ASN B 13 33.16 73.91 REMARK 500 ASN B 32 -153.90 -82.59 REMARK 500 ALA B 34 -62.15 -171.37 REMARK 500 ALA B 77 -78.02 -62.12 REMARK 500 ASN B 97 55.59 -148.11 REMARK 500 ALA B 125 -72.03 -36.32 REMARK 500 GLN B 129 26.71 89.93 REMARK 500 GLN B 167 -70.99 -102.20 REMARK 500 ILE B 213 -83.71 -69.85 REMARK 500 TYR B 214 -61.40 -12.04 REMARK 500 ASP B 221 0.34 -68.61 REMARK 500 LEU B 226 25.05 -59.30 REMARK 500 ASP B 227 -10.55 -161.37 REMARK 500 ALA B 231 -25.00 -36.68 REMARK 500 SER B 234 38.38 -140.58 REMARK 500 GLU B 236 92.33 67.99 REMARK 500 ILE B 237 94.69 -161.15 REMARK 500 ASP B 238 -63.42 -26.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 236 ILE A 237 -139.36 REMARK 500 ALA B 34 GLY B 35 144.96 REMARK 500 ALA B 219 GLY B 220 -143.40 REMARK 500 GLY B 220 ASP B 221 121.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 71 -12.31 REMARK 500 LEU A 72 -13.18 REMARK 500 ASN B 32 -16.79 REMARK 500 GLY B 35 14.34 REMARK 500 THR B 37 -13.18 REMARK 500 ASP B 171 19.75 REMARK 500 ALA B 219 12.67 REMARK 500 GLY B 220 -16.00 REMARK 500 LEU B 226 -13.03 REMARK 500 ALA B 231 -13.29 REMARK 500 GLU B 236 18.63 REMARK 500 ILE B 237 14.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 1262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 1263 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WIC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF THE N-TERMINAL INTRACELLULAR DOMAIN OF FEOB REMARK 900 FROM KLEBSIELLA PNEUMONIAE IN GMPPNP BINDING STATE REMARK 900 RELATED ID: 2WIA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF THE N-TERMINAL INTRACELLULAR DOMAIN OF FEOB REMARK 900 FROM KLEBSIELLA PNEUMONIAE IN APO FORM REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE GENE AND PROTEIN SEQUENCE OF KLEBSIELLA PNEUMONIAE REMARK 999 FEOB WERE PROVIDED BY DR. SHIH-FENG TASI. THE AMINO ACID REMARK 999 SEQUENCE IS AFFIRMED AS ACCURATE. REFERENCE: REMARK 999 SEQUENCING AND ANALYSIS OF THE LARGE VIRULENCE PLASMID REMARK 999 PLVPK OF KLEBSIELLA PNEUMONIAE CG43,Y.-T.CHEN ET AL., REMARK 999 GENE, VOLUME 337, 4 AUGUST 2004, PAGES 189-198. DBREF 2WIB A 1 267 UNP A6TF32 A6TF32_KLEP7 1 267 DBREF 2WIB B 1 267 UNP A6TF32 A6TF32_KLEP7 1 267 SEQADV 2WIB GLN A 129 UNP A6TF32 LYS 129 CONFLICT SEQADV 2WIB GLN B 129 UNP A6TF32 LYS 129 CONFLICT SEQRES 1 A 267 MET GLN LYS LEU THR VAL GLY LEU ILE GLY ASN PRO ASN SEQRES 2 A 267 SER GLY LYS THR THR LEU PHE ASN GLN LEU THR GLY ALA SEQRES 3 A 267 ARG GLN ARG VAL GLY ASN TRP ALA GLY VAL THR VAL GLU SEQRES 4 A 267 ARG LYS GLU GLY ILE PHE ALA THR THR ASP HIS GLN VAL SEQRES 5 A 267 THR LEU VAL ASP LEU PRO GLY THR TYR SER LEU THR THR SEQRES 6 A 267 ILE SER SER GLN THR SER LEU ASP GLU GLN ILE ALA CYS SEQRES 7 A 267 HIS TYR ILE LEU SER GLY ASP ALA ASP MET LEU ILE ASN SEQRES 8 A 267 VAL VAL ASP ALA SER ASN LEU GLU ARG ASN LEU TYR LEU SEQRES 9 A 267 THR LEU GLN LEU LEU GLU LEU GLY ILE PRO CYS VAL VAL SEQRES 10 A 267 ALA LEU ASN MET LEU ASP ILE ALA GLU LYS GLN GLN VAL SEQRES 11 A 267 ARG ILE ASP ILE ASP ALA LEU ALA ALA ARG LEU GLY CYS SEQRES 12 A 267 PRO VAL ILE PRO LEU VAL SER THR ARG GLY ARG GLY ILE SEQRES 13 A 267 GLU ALA LEU LYS ILE ALA LEU ASP ARG HIS GLN ALA ASN SEQRES 14 A 267 SER ASP LEU GLU LEU VAL HIS TYR PRO GLN PRO LEU LEU SEQRES 15 A 267 ARG GLU ALA ASP LEU LEU ALA GLN GLN MET SER ALA GLN SEQRES 16 A 267 ILE PRO PRO ARG GLN ARG ARG TRP LEU GLY LEU GLN MET SEQRES 17 A 267 LEU GLU GLY ASP ILE TYR SER ARG ALA TYR ALA GLY ASP SEQRES 18 A 267 ALA ALA ASP LYS LEU ASP ILE ALA LEU ALA ASN LEU SER SEQRES 19 A 267 ASP GLU ILE ASP ASP PRO ALA LEU HIS ILE ALA ASP ALA SEQRES 20 A 267 ARG TYR GLN THR ILE ALA ALA ILE CYS ASP ALA VAL SER SEQRES 21 A 267 ASN THR LEU THR ALA GLU PRO SEQRES 1 B 267 MET GLN LYS LEU THR VAL GLY LEU ILE GLY ASN PRO ASN SEQRES 2 B 267 SER GLY LYS THR THR LEU PHE ASN GLN LEU THR GLY ALA SEQRES 3 B 267 ARG GLN ARG VAL GLY ASN TRP ALA GLY VAL THR VAL GLU SEQRES 4 B 267 ARG LYS GLU GLY ILE PHE ALA THR THR ASP HIS GLN VAL SEQRES 5 B 267 THR LEU VAL ASP LEU PRO GLY THR TYR SER LEU THR THR SEQRES 6 B 267 ILE SER SER GLN THR SER LEU ASP GLU GLN ILE ALA CYS SEQRES 7 B 267 HIS TYR ILE LEU SER GLY ASP ALA ASP MET LEU ILE ASN SEQRES 8 B 267 VAL VAL ASP ALA SER ASN LEU GLU ARG ASN LEU TYR LEU SEQRES 9 B 267 THR LEU GLN LEU LEU GLU LEU GLY ILE PRO CYS VAL VAL SEQRES 10 B 267 ALA LEU ASN MET LEU ASP ILE ALA GLU LYS GLN GLN VAL SEQRES 11 B 267 ARG ILE ASP ILE ASP ALA LEU ALA ALA ARG LEU GLY CYS SEQRES 12 B 267 PRO VAL ILE PRO LEU VAL SER THR ARG GLY ARG GLY ILE SEQRES 13 B 267 GLU ALA LEU LYS ILE ALA LEU ASP ARG HIS GLN ALA ASN SEQRES 14 B 267 SER ASP LEU GLU LEU VAL HIS TYR PRO GLN PRO LEU LEU SEQRES 15 B 267 ARG GLU ALA ASP LEU LEU ALA GLN GLN MET SER ALA GLN SEQRES 16 B 267 ILE PRO PRO ARG GLN ARG ARG TRP LEU GLY LEU GLN MET SEQRES 17 B 267 LEU GLU GLY ASP ILE TYR SER ARG ALA TYR ALA GLY ASP SEQRES 18 B 267 ALA ALA ASP LYS LEU ASP ILE ALA LEU ALA ASN LEU SER SEQRES 19 B 267 ASP GLU ILE ASP ASP PRO ALA LEU HIS ILE ALA ASP ALA SEQRES 20 B 267 ARG TYR GLN THR ILE ALA ALA ILE CYS ASP ALA VAL SER SEQRES 21 B 267 ASN THR LEU THR ALA GLU PRO HET GDP A1262 28 HET GDP B1263 28 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 5 HOH *117(H2 O) HELIX 1 1 LYS A 16 THR A 24 1 9 HELIX 2 2 ASP A 73 SER A 83 1 11 HELIX 3 3 LEU A 98 LEU A 111 1 14 HELIX 4 4 LEU A 122 LYS A 127 1 6 HELIX 5 5 ILE A 134 LEU A 141 1 8 HELIX 6 6 ILE A 156 ARG A 165 1 10 HELIX 7 7 GLN A 179 GLN A 190 1 12 HELIX 8 8 PRO A 198 GLU A 210 1 13 HELIX 9 9 ILE A 213 ALA A 219 5 7 HELIX 10 10 ASP A 224 ASN A 232 1 9 HELIX 11 11 PRO A 240 VAL A 259 1 20 HELIX 12 12 LYS B 16 THR B 24 1 9 HELIX 13 13 ASP B 73 SER B 83 1 11 HELIX 14 14 LEU B 98 LEU B 111 1 14 HELIX 15 15 LEU B 122 LYS B 127 1 6 HELIX 16 16 ILE B 134 LEU B 141 1 8 HELIX 17 17 ILE B 156 ARG B 165 1 10 HELIX 18 18 GLN B 179 GLN B 190 1 12 HELIX 19 19 PRO B 198 GLU B 210 1 13 HELIX 20 20 ILE B 213 ALA B 219 5 7 HELIX 21 21 LYS B 225 ASN B 232 1 8 HELIX 22 22 PRO B 240 VAL B 259 1 20 SHEET 1 AA 7 GLN A 28 ASN A 32 0 SHEET 2 AA 7 GLU A 39 ALA A 46 -1 O ARG A 40 N GLY A 31 SHEET 3 AA 7 HIS A 50 ASP A 56 -1 O VAL A 52 N PHE A 45 SHEET 4 AA 7 GLN A 2 GLY A 10 1 O GLN A 2 N GLN A 51 SHEET 5 AA 7 MET A 88 ASP A 94 1 O MET A 88 N GLY A 7 SHEET 6 AA 7 CYS A 115 ASN A 120 1 O VAL A 116 N ASN A 91 SHEET 7 AA 7 VAL A 145 PRO A 147 1 O ILE A 146 N LEU A 119 SHEET 1 BA 7 GLN B 28 GLY B 31 0 SHEET 2 BA 7 ARG B 40 THR B 47 -1 O ARG B 40 N GLY B 31 SHEET 3 BA 7 HIS B 50 ASP B 56 -1 O HIS B 50 N THR B 47 SHEET 4 BA 7 GLN B 2 ILE B 9 1 O GLN B 2 N GLN B 51 SHEET 5 BA 7 MET B 88 ASP B 94 1 O MET B 88 N GLY B 7 SHEET 6 BA 7 CYS B 115 ASN B 120 1 O VAL B 116 N ASN B 91 SHEET 7 BA 7 VAL B 145 PRO B 147 1 O ILE B 146 N LEU B 119 SITE 1 AC1 18 ASN A 13 SER A 14 GLY A 15 LYS A 16 SITE 2 AC1 18 THR A 17 THR A 18 ASN A 120 MET A 121 SITE 3 AC1 18 ASP A 123 ILE A 124 VAL A 149 SER A 150 SITE 4 AC1 18 THR A 151 HOH A2002 HOH A2006 ASP B 123 SITE 5 AC1 18 THR B 151 GDP B1263 SITE 1 AC2 19 ASP A 123 THR A 151 GDP A1262 ASN B 13 SITE 2 AC2 19 SER B 14 GLY B 15 LYS B 16 THR B 17 SITE 3 AC2 19 THR B 18 ASN B 120 MET B 121 ASP B 123 SITE 4 AC2 19 ILE B 124 VAL B 149 SER B 150 THR B 151 SITE 5 AC2 19 HOH B2002 HOH B2029 HOH B2030 CRYST1 86.552 184.688 38.168 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011554 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026200 0.00000