HEADER METAL TRANSPORT 09-MAY-09 2WIC TITLE CRYSTAL STRUCTURES OF THE N-TERMINAL INTRACELLULAR DOMAIN OF FEOB FROM TITLE 2 KLEBSIELLA PNEUMONIAE IN GMPPNP BINDING STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERROUS IRON TRANSPORT PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL INTRACELLULAR DOMAIN, RESIDUES 1-267; COMPND 5 SYNONYM: FEOB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834 KEYWDS SIGNAL TRANSDUCTION, FERROUS IRON TRANSPORT, MEMBRANE PROTEIN, METAL KEYWDS 2 TRANSPORT, G PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.-W.HUNG,Y.-W.CHANG,J.-H.CHEN,Y.-C.CHEN,Y.-J.SUN,C.-D.HSIAO,T.- AUTHOR 2 H.HUANG REVDAT 2 08-MAY-24 2WIC 1 REMARK LINK REVDAT 1 19-MAY-10 2WIC 0 JRNL AUTH K.-W.HUNG,Y.-W.CHANG,E.T.ENG,J.-H.CHEN,Y.-C.CHEN,Y.-J.SUN, JRNL AUTH 2 C.-D.HSIAO,G.DONG,K.A.SPASOV,V.M.UNGER,T.-H.HUANG JRNL TITL STRUCTURAL FOLD, CONSERVATION AND FE(II) BINDING OF THE JRNL TITL 2 INTRACELLULAR DOMAIN OF PROKARYOTE FEOB. JRNL REF J.STRUCT.BIOL. V. 170 501 2010 JRNL REFN ISSN 1047-8477 JRNL PMID 20123128 JRNL DOI 10.1016/J.JSB.2010.01.017 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.CHEN,H.CHANG,Y.LAI,C.PAN,S.TSAI,H.PENG REMARK 1 TITL SEQUENCING AND ANALYSIS OF THE LARGE VIRULENCE PLASMID PLVPK REMARK 1 TITL 2 OF KLEBSIELLA PNEUMONIAE CG43. REMARK 1 REF GENE V. 337 189 2004 REMARK 1 REFN ISSN 0378-1119 REMARK 1 PMID 15276215 REMARK 1 DOI 10.1016/J.GENE.2004.05.008 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 102628.860 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 83.2 REMARK 3 NUMBER OF REFLECTIONS : 41181 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1204 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.18 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4673 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 147 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.019 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1883 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.09 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.10 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.021 REMARK 3 BOND ANGLES (DEGREES) : 2.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 3.150 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.400 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.270 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.990 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.030 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 43.85 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GNP.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GNP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2WIC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1290039751. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97869 , 0.97888, 0.96365 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48292 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 25.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.5, 25% PEG4000, REMARK 280 100 MM NA ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 53.44850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.44850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.44850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.44850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.44850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 53.44850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 53.44850 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 53.44850 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 53.44850 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 53.44850 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 53.44850 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 53.44850 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 53.44850 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 53.44850 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 53.44850 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 53.44850 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 53.44850 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 53.44850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 -53.44850 REMARK 350 BIOMT3 2 -1.000000 0.000000 0.000000 53.44850 REMARK 350 BIOMT1 3 0.000000 0.000000 -1.000000 53.44850 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 1.000000 0.000000 53.44850 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A1267 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 29 REMARK 465 VAL A 30 REMARK 465 GLY A 31 REMARK 465 ASN A 32 REMARK 465 TRP A 33 REMARK 465 ALA A 34 REMARK 465 GLY A 35 REMARK 465 VAL A 36 REMARK 465 THR A 37 REMARK 465 VAL A 38 REMARK 465 GLU A 39 REMARK 465 ARG A 40 REMARK 465 GLN A 69 REMARK 465 THR A 70 REMARK 465 SER A 71 REMARK 465 LEU A 72 REMARK 465 ALA A 265 REMARK 465 GLU A 266 REMARK 465 PRO A 267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 28 CG CD OE1 NE2 REMARK 470 SER A 67 OG REMARK 470 SER A 68 OG REMARK 470 ASP A 73 CG OD1 OD2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 115 CB CYS A 115 SG -0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 106 CB - CG - CD1 ANGL. DEV. = -15.3 DEGREES REMARK 500 SER A 193 C - N - CA ANGL. DEV. = 15.2 DEGREES REMARK 500 ASP A 221 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 62 148.11 -171.19 REMARK 500 SER A 67 129.61 -170.28 REMARK 500 MET A 192 174.89 -52.05 REMARK 500 SER A 193 -16.04 -30.07 REMARK 500 ALA A 194 -5.85 56.24 REMARK 500 ALA A 219 -98.06 -77.29 REMARK 500 ASP A 221 97.45 -52.82 REMARK 500 ALA A 222 -97.26 -93.17 REMARK 500 ALA A 223 -93.01 -56.76 REMARK 500 ASP A 224 42.90 -98.21 REMARK 500 ASN A 232 9.39 -60.33 REMARK 500 GLU A 236 -60.92 -126.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 74 GLN A 75 134.33 REMARK 500 GLY A 220 ASP A 221 148.80 REMARK 500 ASP A 224 LYS A 225 145.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 221 10.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1266 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 GNP A1265 O2G 168.8 REMARK 620 3 GNP A1265 O1B 89.0 87.9 REMARK 620 4 HOH A2002 O 86.8 96.1 175.7 REMARK 620 5 HOH A2008 O 81.1 88.2 92.4 86.2 REMARK 620 6 HOH A2060 O 90.6 100.2 90.1 90.7 171.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1267 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 133 OD2 REMARK 620 2 ASP A 133 OD2 85.7 REMARK 620 3 ASP A 133 OD2 86.2 86.6 REMARK 620 4 HOH A2026 O 90.0 174.6 89.9 REMARK 620 5 HOH A2026 O 88.2 89.7 173.5 93.4 REMARK 620 6 HOH A2026 O 174.9 89.7 91.5 94.6 93.8 REMARK 620 N 1 2 3 4 5 REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 1265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1267 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WIA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF THE N-TERMINAL INTRACELLULAR DOMAIN OF FEOB REMARK 900 FROM KLEBSIELLA PNEUMONIAE IN APO FORM REMARK 900 RELATED ID: 2WIB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF THE N-TERMINAL INTRACELLULAR DOMAIN OF FEOB REMARK 900 FROM KLEBSIELLA PNEUMONIAE IN GDP BINDING STATE DBREF 2WIC A 1 267 UNP A6TF32 A6TF32_KLEP7 1 267 SEQADV 2WIC GLN A 129 UNP A6TF32 LYS 129 CONFLICT SEQRES 1 A 267 MET GLN LYS LEU THR VAL GLY LEU ILE GLY ASN PRO ASN SEQRES 2 A 267 SER GLY LYS THR THR LEU PHE ASN GLN LEU THR GLY ALA SEQRES 3 A 267 ARG GLN ARG VAL GLY ASN TRP ALA GLY VAL THR VAL GLU SEQRES 4 A 267 ARG LYS GLU GLY ILE PHE ALA THR THR ASP HIS GLN VAL SEQRES 5 A 267 THR LEU VAL ASP LEU PRO GLY THR TYR SER LEU THR THR SEQRES 6 A 267 ILE SER SER GLN THR SER LEU ASP GLU GLN ILE ALA CYS SEQRES 7 A 267 HIS TYR ILE LEU SER GLY ASP ALA ASP MET LEU ILE ASN SEQRES 8 A 267 VAL VAL ASP ALA SER ASN LEU GLU ARG ASN LEU TYR LEU SEQRES 9 A 267 THR LEU GLN LEU LEU GLU LEU GLY ILE PRO CYS VAL VAL SEQRES 10 A 267 ALA LEU ASN MET LEU ASP ILE ALA GLU LYS GLN GLN VAL SEQRES 11 A 267 ARG ILE ASP ILE ASP ALA LEU ALA ALA ARG LEU GLY CYS SEQRES 12 A 267 PRO VAL ILE PRO LEU VAL SER THR ARG GLY ARG GLY ILE SEQRES 13 A 267 GLU ALA LEU LYS ILE ALA LEU ASP ARG HIS GLN ALA ASN SEQRES 14 A 267 SER ASP LEU GLU LEU VAL HIS TYR PRO GLN PRO LEU LEU SEQRES 15 A 267 ARG GLU ALA ASP LEU LEU ALA GLN GLN MET SER ALA GLN SEQRES 16 A 267 ILE PRO PRO ARG GLN ARG ARG TRP LEU GLY LEU GLN MET SEQRES 17 A 267 LEU GLU GLY ASP ILE TYR SER ARG ALA TYR ALA GLY ASP SEQRES 18 A 267 ALA ALA ASP LYS LEU ASP ILE ALA LEU ALA ASN LEU SER SEQRES 19 A 267 ASP GLU ILE ASP ASP PRO ALA LEU HIS ILE ALA ASP ALA SEQRES 20 A 267 ARG TYR GLN THR ILE ALA ALA ILE CYS ASP ALA VAL SER SEQRES 21 A 267 ASN THR LEU THR ALA GLU PRO HET GNP A1265 32 HET MG A1266 1 HET MG A1267 1 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *60(H2 O) HELIX 1 1 LYS A 16 THR A 24 1 9 HELIX 2 2 GLN A 75 SER A 83 1 9 HELIX 3 3 LEU A 98 LEU A 111 1 14 HELIX 4 4 LEU A 122 LYS A 127 1 6 HELIX 5 5 ILE A 134 LEU A 141 1 8 HELIX 6 6 SER A 150 ARG A 152 5 3 HELIX 7 7 ILE A 156 ARG A 165 1 10 HELIX 8 8 GLN A 179 GLN A 190 1 12 HELIX 9 9 PRO A 198 GLU A 210 1 13 HELIX 10 10 ILE A 213 ALA A 219 5 7 HELIX 11 11 ASP A 224 ASN A 232 1 9 HELIX 12 12 PRO A 240 VAL A 259 1 20 SHEET 1 AA 6 GLY A 43 ALA A 46 0 SHEET 2 AA 6 HIS A 50 ASP A 56 -1 O VAL A 52 N PHE A 45 SHEET 3 AA 6 GLN A 2 GLY A 10 1 O GLN A 2 N GLN A 51 SHEET 4 AA 6 MET A 88 ASP A 94 1 O MET A 88 N GLY A 7 SHEET 5 AA 6 CYS A 115 ASN A 120 1 O VAL A 116 N ASN A 91 SHEET 6 AA 6 VAL A 145 PRO A 147 1 O ILE A 146 N LEU A 119 LINK OG1 THR A 17 MG MG A1266 1555 1555 2.09 LINK OD2 ASP A 133 MG MG A1267 7555 1555 2.04 LINK OD2 ASP A 133 MG MG A1267 10545 1555 2.02 LINK OD2 ASP A 133 MG MG A1267 1555 1555 2.00 LINK O2G GNP A1265 MG MG A1266 1555 1555 2.09 LINK O1B GNP A1265 MG MG A1266 1555 1555 2.09 LINK MG MG A1266 O HOH A2002 1555 1555 2.06 LINK MG MG A1266 O HOH A2008 1555 1555 2.02 LINK MG MG A1266 O HOH A2060 1555 1555 2.02 LINK MG MG A1267 O HOH A2026 1555 1555 1.99 LINK MG MG A1267 O HOH A2026 1555 7555 2.01 LINK MG MG A1267 O HOH A2026 1555 10545 1.97 SITE 1 AC1 18 PRO A 12 ASN A 13 SER A 14 GLY A 15 SITE 2 AC1 18 LYS A 16 THR A 17 THR A 18 ASN A 120 SITE 3 AC1 18 MET A 121 ASP A 123 ILE A 124 VAL A 149 SITE 4 AC1 18 SER A 150 THR A 151 MG A1266 HOH A2002 SITE 5 AC1 18 HOH A2008 HOH A2060 SITE 1 AC2 5 THR A 17 GNP A1265 HOH A2002 HOH A2008 SITE 2 AC2 5 HOH A2060 SITE 1 AC3 2 ASP A 133 HOH A2026 CRYST1 106.897 106.897 106.897 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009355 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009355 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009355 0.00000