HEADER HYDROLASE/DNA 18-MAY-09 2WIW TITLE CRYSTAL STRUCTURES OF HOLLIDAY JUNCTION RESOLVASES FROM ARCHAEOGLOBUS TITLE 2 FULGIDUS BOUND TO DNA SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HJC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 2-136; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: N-TERMINUS CONTAINS EXTRA RESIDUES AS A RESULT OF COMPND 7 CLONING PROCEDURE; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*DC*DG*DG*DA*DT*DA*DT*DC*DC*DGP)-3'; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: SYNTHESIZED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 STRAIN: 4304; SOURCE 5 ATCC: 49558; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETM12; SOURCE 10 OTHER_DETAILS: GERMAN COLLECTION OF MICROORGANISMS (DSM); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: SYNTHESIZED BY METABION GMBH, MARTINSRIED, GERMANY KEYWDS HYDROLASE-DNA COMPLEX, HYDROLASE DNA COMPLEX, TYPE II RESTRICTION KEYWDS 2 ENDONUCLEASE, HOLLIDAY JUNCTION RESOLVASE, HYDROLASE, DNA BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CAROLIS,C.KOEHLER,C.SAUTER,J.BASQUIN,D.SUCK,I.TOEROE REVDAT 4 13-DEC-23 2WIW 1 REMARK REVDAT 3 10-JUN-15 2WIW 1 REVDAT REVDAT 2 20-MAY-15 2WIW 1 COMPND SOURCE KEYWDS REVDAT REVDAT 2 2 1 JRNL REMARK VERSN HETSYN REVDAT 2 3 1 FORMUL MASTER REVDAT 1 26-MAY-09 2WIW 0 JRNL AUTH C.CAROLIS,C.KOEHLER,C.SAUTER,J.BASQUIN,D.SUCK,I.TOEROE JRNL TITL CRYSTAL STRUCTURES OF HOLLIDAY JUNCTION RESOLVASES FROM JRNL TITL 2 ARCHAEOGLOBUS FULGIDUS BOUND TO DNA SUBSTRATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 27224 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1253 - 3.8754 0.93 2843 153 0.1642 0.1816 REMARK 3 2 3.8754 - 3.0763 0.97 2839 136 0.1514 0.2200 REMARK 3 3 3.0763 - 2.6875 0.97 2773 158 0.1691 0.2048 REMARK 3 4 2.6875 - 2.4418 0.96 2758 152 0.1704 0.2370 REMARK 3 5 2.4418 - 2.2668 0.95 2695 135 0.1762 0.2357 REMARK 3 6 2.2668 - 2.1331 0.91 2599 132 0.1745 0.2317 REMARK 3 7 2.1331 - 2.0263 0.89 2494 162 0.1828 0.2378 REMARK 3 8 2.0263 - 1.9381 0.86 2425 123 0.1977 0.2932 REMARK 3 9 1.9381 - 1.8635 0.83 2305 127 0.2255 0.2684 REMARK 3 10 1.8635 - 1.7992 0.75 2102 113 0.2624 0.3327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.37470 REMARK 3 B22 (A**2) : 10.58320 REMARK 3 B33 (A**2) : -8.20850 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2518 REMARK 3 ANGLE : 1.262 3477 REMARK 3 CHIRALITY : 0.078 379 REMARK 3 PLANARITY : 0.006 371 REMARK 3 DIHEDRAL : 20.163 977 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 5:35) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4038 12.4204 -29.5337 REMARK 3 T TENSOR REMARK 3 T11: 0.2305 T22: 0.2442 REMARK 3 T33: 0.3220 T12: 0.0126 REMARK 3 T13: -0.0487 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.4931 L22: 1.2427 REMARK 3 L33: 0.4957 L12: -0.7220 REMARK 3 L13: -0.3753 L23: 0.3427 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: 0.2057 S13: -0.2350 REMARK 3 S21: -0.1055 S22: 0.0692 S23: 0.2215 REMARK 3 S31: 0.1988 S32: 0.1419 S33: -0.0801 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 36:124) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5549 17.3886 -41.1296 REMARK 3 T TENSOR REMARK 3 T11: 0.1577 T22: 0.1493 REMARK 3 T33: 0.1871 T12: -0.0122 REMARK 3 T13: 0.0007 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.9662 L22: 1.3779 REMARK 3 L33: 3.3425 L12: -0.1035 REMARK 3 L13: 0.3622 L23: 0.6456 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: 0.1950 S13: 0.0173 REMARK 3 S21: -0.1627 S22: 0.1019 S23: -0.0484 REMARK 3 S31: -0.0604 S32: 0.1374 S33: -0.0888 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 5:31) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7270 6.6392 -20.6214 REMARK 3 T TENSOR REMARK 3 T11: 0.2428 T22: 0.1847 REMARK 3 T33: 0.2734 T12: 0.0197 REMARK 3 T13: -0.0189 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.6694 L22: 0.0328 REMARK 3 L33: 0.4939 L12: 0.0281 REMARK 3 L13: 0.0562 L23: -0.1289 REMARK 3 S TENSOR REMARK 3 S11: 0.0825 S12: 0.0404 S13: -0.3091 REMARK 3 S21: -0.2591 S22: -0.0531 S23: 0.1984 REMARK 3 S31: 0.4179 S32: -0.0919 S33: -0.0228 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 32:130) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5775 14.4631 -9.5932 REMARK 3 T TENSOR REMARK 3 T11: 0.1822 T22: 0.2132 REMARK 3 T33: 0.2185 T12: 0.0172 REMARK 3 T13: 0.0091 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.9118 L22: 1.7427 REMARK 3 L33: 2.3112 L12: -0.1325 REMARK 3 L13: 1.0983 L23: -0.5296 REMARK 3 S TENSOR REMARK 3 S11: 0.0093 S12: -0.3212 S13: -0.1875 REMARK 3 S21: 0.1826 S22: 0.0712 S23: 0.0471 REMARK 3 S31: -0.1323 S32: -0.0061 S33: -0.0679 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN C AND RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2298 -8.1162 -6.5843 REMARK 3 T TENSOR REMARK 3 T11: 0.4407 T22: 0.5347 REMARK 3 T33: 0.2589 T12: -0.0046 REMARK 3 T13: -0.0388 T23: 0.0133 REMARK 3 L TENSOR REMARK 3 L11: 1.7468 L22: 2.9217 REMARK 3 L33: 1.6394 L12: -0.4916 REMARK 3 L13: -0.9561 L23: 0.9040 REMARK 3 S TENSOR REMARK 3 S11: 0.8659 S12: 0.6382 S13: -0.3878 REMARK 3 S21: 0.1454 S22: -1.1471 S23: 0.1223 REMARK 3 S31: 0.3427 S32: -1.1920 S33: 0.1106 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN C AND RESID 6:10) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0882 5.0399 5.1915 REMARK 3 T TENSOR REMARK 3 T11: 0.4146 T22: 0.3249 REMARK 3 T33: 0.4303 T12: 0.0590 REMARK 3 T13: 0.1069 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.4635 L22: 4.4103 REMARK 3 L33: 2.4098 L12: -1.3367 REMARK 3 L13: 0.5801 L23: 0.6687 REMARK 3 S TENSOR REMARK 3 S11: 0.1526 S12: -0.1427 S13: 0.7001 REMARK 3 S21: -0.2274 S22: 0.4326 S23: -1.2425 REMARK 3 S31: -0.0881 S32: -0.1690 S33: -0.4083 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN D AND RESID 1:6) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1460 -0.5207 6.6517 REMARK 3 T TENSOR REMARK 3 T11: 0.3835 T22: 0.2133 REMARK 3 T33: 0.2935 T12: 0.0668 REMARK 3 T13: -0.0372 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 1.0312 L22: 0.6554 REMARK 3 L33: 1.1896 L12: 0.0818 REMARK 3 L13: 0.0006 L23: 0.4708 REMARK 3 S TENSOR REMARK 3 S11: 0.2756 S12: 0.4487 S13: -0.1126 REMARK 3 S21: 0.0290 S22: 0.1156 S23: -0.2525 REMARK 3 S31: 0.0831 S32: 0.2375 S33: -0.3013 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN D AND RESID 7:10) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2087 -1.5812 -10.3859 REMARK 3 T TENSOR REMARK 3 T11: 0.5576 T22: 0.6432 REMARK 3 T33: 0.4150 T12: 0.2025 REMARK 3 T13: 0.2219 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 3.5528 L22: 2.4888 REMARK 3 L33: 0.8052 L12: 1.2654 REMARK 3 L13: 1.0038 L23: -0.6235 REMARK 3 S TENSOR REMARK 3 S11: 0.4643 S12: 1.9411 S13: 0.4420 REMARK 3 S21: -0.6594 S22: 0.3727 S23: 0.0338 REMARK 3 S31: -0.6442 S32: -1.2189 S33: -0.6436 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS WERE ADDED IN THE RIDING REMARK 3 POSITIONS, BUT REMOVED FROM THE DEPOSITED COORDINATE FILE. REMARK 4 REMARK 4 2WIW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1290039850. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SI (111) MONOCHROMATOR REMARK 200 OPTICS : PT COATED MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.1 REMARK 200 DATA REDUNDANCY : 3.240 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WCZ REMARK 200 REMARK 200 REMARK: DECAMER PALINDROMIC DNA WAS MODELLED AS B-DNA IN COOT REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35 %(W/V) 1.6-HEXANEDIOL, 0.05 M REMARK 280 TRIS.HCL PH=8.5, 0.005 M MAGNESIUM SULFATE, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.69000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.78000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.78000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.69000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 THR A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 125 REMARK 465 LYS A 126 REMARK 465 PHE A 127 REMARK 465 PHE A 128 REMARK 465 GLN A 129 REMARK 465 GLU A 130 REMARK 465 ARG A 131 REMARK 465 PHE A 132 REMARK 465 GLY A 133 REMARK 465 GLU A 134 REMARK 465 LYS A 135 REMARK 465 VAL A 136 REMARK 465 GLY B -2 REMARK 465 THR B -1 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 LYS B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 ARG B 131 REMARK 465 PHE B 132 REMARK 465 GLY B 133 REMARK 465 GLU B 134 REMARK 465 LYS B 135 REMARK 465 VAL B 136 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2036 O HOH A 2043 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 3 O3' DG D 3 C3' -0.051 REMARK 500 DT D 7 O3' DT D 7 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 8 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 9 O4' - C1' - N1 ANGL. DEV. = -5.7 DEGREES REMARK 500 DG D 3 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG D 3 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC D 9 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 37 -154.61 -81.38 REMARK 500 ARG A 45 -43.51 -131.99 REMARK 500 ASN A 106 -155.48 -128.37 REMARK 500 ASP A 110 -168.58 -107.07 REMARK 500 ASN B 106 -150.54 -136.63 REMARK 500 ASP B 110 -167.82 -127.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ A 1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ A 1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ D 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEZ B 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1127 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WIZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF HOLLIDAY JUNCTION RESOLVASES FROM REMARK 900 ARCHAEOGLOBUS FULGIDUS BOUND TO DNA SUBSTRATE REMARK 900 RELATED ID: 2WJ0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF HOLLIDAY JUNCTION RESOLVASES FROM REMARK 900 ARCHAEOGLOBUS FULGIDUS BOUND TO DNA SUBSTRATE REMARK 999 REMARK 999 SEQUENCE REMARK 999 INSERTED RESIDUES GTMG AT THE N-TERMINUS ARE A RESULT OF REMARK 999 CLONING PROCEDURE. REMARK 999 RESIDUES C1 AND D1 HAVE THEIR 5'-PHOSPHATE GROUP REMOVED DBREF 2WIW A -2 1 PDB 2WIW 2WIW -2 1 DBREF 2WIW A 2 136 UNP O28314 O28314_ARCFU 2 136 DBREF 2WIW B -2 1 PDB 2WIW 2WIW -2 1 DBREF 2WIW B 2 136 UNP O28314 O28314_ARCFU 2 136 DBREF 2WIW C 1 10 PDB 2WIW 2WIW 1 10 DBREF 2WIW D 1 10 PDB 2WIW 2WIW 1 10 SEQRES 1 A 139 GLY THR MET GLY LYS SER LYS GLY THR ARG PHE GLU ARG SEQRES 2 A 139 ASP LEU LEU VAL GLU LEU TRP LYS ALA GLY PHE ALA ALA SEQRES 3 A 139 ILE ARG VAL ALA GLY SER GLY VAL SER PRO PHE PRO CYS SEQRES 4 A 139 PRO ASP ILE VAL ALA GLY ASN GLY ARG THR TYR LEU ALA SEQRES 5 A 139 ILE GLU VAL LYS MET ARG LYS GLU LEU PRO LEU TYR LEU SEQRES 6 A 139 SER ALA ASP GLU VAL GLU GLN LEU VAL THR PHE ALA ARG SEQRES 7 A 139 GLY PHE GLY ALA GLU ALA TYR VAL ALA LEU LYS LEU PRO SEQRES 8 A 139 ARG LYS LYS TRP ARG PHE PHE PRO VAL GLN MET LEU GLU SEQRES 9 A 139 ARG THR GLU LYS ASN PHE LYS ILE ASP GLU SER VAL TYR SEQRES 10 A 139 PRO LEU GLY LEU GLU ILE ALA GLU VAL ALA GLY LYS PHE SEQRES 11 A 139 PHE GLN GLU ARG PHE GLY GLU LYS VAL SEQRES 1 B 139 GLY THR MET GLY LYS SER LYS GLY THR ARG PHE GLU ARG SEQRES 2 B 139 ASP LEU LEU VAL GLU LEU TRP LYS ALA GLY PHE ALA ALA SEQRES 3 B 139 ILE ARG VAL ALA GLY SER GLY VAL SER PRO PHE PRO CYS SEQRES 4 B 139 PRO ASP ILE VAL ALA GLY ASN GLY ARG THR TYR LEU ALA SEQRES 5 B 139 ILE GLU VAL LYS MET ARG LYS GLU LEU PRO LEU TYR LEU SEQRES 6 B 139 SER ALA ASP GLU VAL GLU GLN LEU VAL THR PHE ALA ARG SEQRES 7 B 139 GLY PHE GLY ALA GLU ALA TYR VAL ALA LEU LYS LEU PRO SEQRES 8 B 139 ARG LYS LYS TRP ARG PHE PHE PRO VAL GLN MET LEU GLU SEQRES 9 B 139 ARG THR GLU LYS ASN PHE LYS ILE ASP GLU SER VAL TYR SEQRES 10 B 139 PRO LEU GLY LEU GLU ILE ALA GLU VAL ALA GLY LYS PHE SEQRES 11 B 139 PHE GLN GLU ARG PHE GLY GLU LYS VAL SEQRES 1 C 10 DC DG DG DA DT DA DT DC DC DG SEQRES 1 D 10 DC DG DG DA DT DA DT DC DC DG HET HEZ A1125 8 HET HEZ A1126 8 HET GOL A1127 6 HET HEZ B1131 8 HET GOL B1132 6 HET HEZ D1011 8 HETNAM HEZ HEXANE-1,6-DIOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 HEZ 4(C6 H14 O2) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 11 HOH *175(H2 O) HELIX 1 1 GLY A 5 ALA A 19 1 15 HELIX 2 2 SER A 63 GLY A 78 1 16 HELIX 3 3 GLN A 98 LEU A 100 5 3 HELIX 4 4 VAL A 113 GLY A 117 5 5 HELIX 5 5 GLU A 119 ALA A 124 1 6 HELIX 6 6 THR B 6 ALA B 19 1 14 HELIX 7 7 SER B 63 GLY B 78 1 16 HELIX 8 8 GLN B 98 LEU B 100 5 3 HELIX 9 9 VAL B 113 GLY B 117 5 5 HELIX 10 10 GLU B 119 GLY B 125 1 7 HELIX 11 11 LYS B 126 GLN B 129 5 4 SHEET 1 AA10 ARG A 93 PRO A 96 0 SHEET 2 AA10 GLU A 80 LYS A 86 -1 O VAL A 83 N PHE A 95 SHEET 3 AA10 TYR A 47 MET A 54 1 O TYR A 47 N GLU A 80 SHEET 4 AA10 ILE A 39 GLY A 42 -1 O ILE A 39 N ILE A 50 SHEET 5 AA10 ALA A 22 GLY A 28 -1 O ALA A 22 N GLY A 42 SHEET 6 AA10 ALA B 22 VAL B 26 -1 O ARG B 25 N ALA A 27 SHEET 7 AA10 ILE B 39 GLY B 42 -1 O VAL B 40 N ILE B 24 SHEET 8 AA10 TYR B 47 MET B 54 -1 O LEU B 48 N ALA B 41 SHEET 9 AA10 GLU B 80 LYS B 86 1 O GLU B 80 N ALA B 49 SHEET 10 AA10 ARG B 93 PRO B 96 -1 O ARG B 93 N LEU B 85 SHEET 1 AB 3 LEU A 60 LEU A 62 0 SHEET 2 AB 3 PHE A 107 ILE A 109 -1 O PHE A 107 N LEU A 62 SHEET 3 AB 3 GLU A 101 ARG A 102 -1 O GLU A 101 N LYS A 108 SHEET 1 BA 3 LEU B 60 LEU B 62 0 SHEET 2 BA 3 PHE B 107 ILE B 109 -1 O PHE B 107 N LEU B 62 SHEET 3 BA 3 GLU B 101 ARG B 102 -1 O GLU B 101 N LYS B 108 CISPEP 1 CYS A 36 PRO A 37 0 -6.81 CISPEP 2 LEU A 58 PRO A 59 0 3.00 CISPEP 3 GLY B 5 THR B 6 0 -2.75 CISPEP 4 LEU B 58 PRO B 59 0 0.17 SITE 1 AC1 8 LEU A 13 TRP A 17 ALA A 22 ALA A 23 SITE 2 AC1 8 HOH A2086 PHE B 34 PRO B 35 HOH B2004 SITE 1 AC2 2 VAL A 97 HOH A2088 SITE 1 AC3 5 DC C 9 DG D 3 DA D 4 DT D 5 SITE 2 AC3 5 HOH D2011 SITE 1 AC4 6 GLU B 57 LEU B 58 PRO B 88 LYS B 90 SITE 2 AC4 6 GLU B 111 DA C 6 SITE 1 AC5 5 ARG B 102 THR B 103 LYS B 105 ASN B 106 SITE 2 AC5 5 HOH B2066 SITE 1 AC6 3 GLU A 104 GLY A 117 GLU A 122 CRYST1 35.380 82.860 107.560 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028265 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012069 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009297 0.00000 MTRIX1 1 0.374800 0.507500 -0.775900 21.30000 1 MTRIX2 1 0.545400 -0.797400 -0.258100 14.84000 1 MTRIX3 1 -0.749700 -0.326500 -0.575600 48.49000 1 MTRIX1 2 -0.767300 0.611800 -0.192300 20.22000 1 MTRIX2 2 0.593700 0.564200 -0.573700 -7.50100 1 MTRIX3 2 -0.242500 -0.554400 -0.796200 1.09100 1