HEADER CELL ADHESION 28-MAY-09 2WJS TITLE CRYSTAL STRUCTURE OF THE LG1-3 REGION OF THE LAMININ ALPHA2 CHAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LAMININ SUBUNIT ALPHA-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LG1-3,RESIDUES 2136-2475,2480-2565,2579-2746; COMPND 5 SYNONYM: LAMININ M CHAIN, MEROSIN HEAVY CHAIN, LAMININ ALPHA2 CHAIN; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PROTEIN EXPRESSED IN PRESENCE OF KIFUNENSINE AND COMPND 8 DIGESTED WITH ENDOGLYCOSIDASE H SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: 293-EBNA; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCEP-PU KEYWDS INTEGRIN, SECRETED, COILED COIL, GLYCOPROTEIN, LAMININ EGF-LIKE KEYWDS 2 DOMAIN, EXTRACELLULAR MATRIX, LAMININ G-LIKE DOMAIN, CELL ADHESION, KEYWDS 3 DISULFIDE BOND, BASEMENT MEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR F.CARAFOLI,N.J.CLOUT,E.HOHENESTER REVDAT 5 13-DEC-23 2WJS 1 HETSYN REVDAT 4 29-JUL-20 2WJS 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 25-AUG-09 2WJS 1 JRNL REVDAT 2 07-JUL-09 2WJS 1 JRNL REVDAT 1 23-JUN-09 2WJS 0 JRNL AUTH F.CARAFOLI,N.J.CLOUT,E.HOHENESTER JRNL TITL CRYSTAL STRUCTURE OF THE LG1-3 REGION OF THE LAMININ JRNL TITL 2 {ALPHA}2 CHAIN. JRNL REF J.BIOL.CHEM. V. 284 22786 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19553699 JRNL DOI 10.1074/JBC.M109.026658 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 19245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1894 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3937 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.21000 REMARK 3 B22 (A**2) : 2.21000 REMARK 3 B33 (A**2) : -4.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : INDIVIDUAL RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.250 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.160 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.820 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.810 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 24.06 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WJS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1290039974. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.045 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19248 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1DYK REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.26333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.63167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.94750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.31583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.57917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2132 REMARK 465 PRO A 2133 REMARK 465 LEU A 2134 REMARK 465 ALA A 2135 REMARK 465 GLN A 2136 REMARK 465 ALA A 2137 REMARK 465 ASN A 2138 REMARK 465 SER A 2139 REMARK 465 ILE A 2140 REMARK 465 LYS A 2141 REMARK 465 SER A 2146 REMARK 465 GLY A 2147 REMARK 465 GLY A 2148 REMARK 465 ASP A 2149 REMARK 465 GLY A 2310 REMARK 465 LEU A 2311 REMARK 465 TRP A 2312 REMARK 465 ASN A 2313 REMARK 465 THR A 2325 REMARK 465 VAL A 2326 REMARK 465 SER A 2327 REMARK 465 PRO A 2328 REMARK 465 GLN A 2329 REMARK 465 VAL A 2330 REMARK 465 GLU A 2331 REMARK 465 ASP A 2332 REMARK 465 GLY A 2564 REMARK 465 GLY A 2565 REMARK 465 GLY A 2566 REMARK 465 GLY A 2598 REMARK 465 THR A 2599 REMARK 465 ARG A 2600 REMARK 465 THR A 2601 REMARK 465 GLU A 2664 REMARK 465 PHE A 2665 REMARK 465 GLN A 2666 REMARK 465 PRO A 2667 REMARK 465 SER A 2668 REMARK 465 PRO A 2669 REMARK 465 LEU A 2670 REMARK 465 ARG A 2671 REMARK 465 GLN A 2709 REMARK 465 LYS A 2710 REMARK 465 PRO A 2711 REMARK 465 ARG A 2712 REMARK 465 GLU A 2713 REMARK 465 ASP A 2714 REMARK 465 GLU A 2715 REMARK 465 SER A 2716 REMARK 465 GLU A 2717 REMARK 465 ALA A 2718 REMARK 465 VAL A 2719 REMARK 465 PRO A 2720 REMARK 465 ALA A 2721 REMARK 465 GLU A 2722 REMARK 465 VAL A 2723 REMARK 465 ILE A 2724 REMARK 465 VAL A 2725 REMARK 465 GLN A 2726 REMARK 465 PRO A 2727 REMARK 465 GLN A 2728 REMARK 465 PRO A 2729 REMARK 465 VAL A 2730 REMARK 465 PRO A 2731 REMARK 465 THR A 2732 REMARK 465 PRO A 2733 REMARK 465 ALA A 2734 REMARK 465 PHE A 2735 REMARK 465 PRO A 2736 REMARK 465 PHE A 2737 REMARK 465 PRO A 2738 REMARK 465 ALA A 2739 REMARK 465 PRO A 2740 REMARK 465 THR A 2741 REMARK 465 MET A 2742 REMARK 465 VAL A 2743 REMARK 465 HIS A 2744 REMARK 465 GLY A 2745 REMARK 465 PRO A 2746 REMARK 465 ALA A 2747 REMARK 465 ALA A 2748 REMARK 465 ALA A 2749 REMARK 465 HIS A 2750 REMARK 465 HIS A 2751 REMARK 465 HIS A 2752 REMARK 465 HIS A 2753 REMARK 465 HIS A 2754 REMARK 465 HIS A 2755 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A2142 CG1 CG2 REMARK 470 GLU A2157 CG CD OE1 OE2 REMARK 470 ILE A2158 CG1 CG2 CD1 REMARK 470 LYS A2159 CG CD CE NZ REMARK 470 LYS A2283 CG CD CE NZ REMARK 470 ARG A2291 CG CD NE CZ NH1 NH2 REMARK 470 LYS A2307 CG CD CE NZ REMARK 470 PHE A2314 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A2315 CG CD NE CZ NH1 NH2 REMARK 470 LYS A2317 CG CD CE NZ REMARK 470 GLU A2318 CG CD OE1 OE2 REMARK 470 LYS A2322 CG CD CE NZ REMARK 470 ARG A2379 CG CD NE CZ NH1 NH2 REMARK 470 ARG A2473 CG CD NE CZ NH1 NH2 REMARK 470 LYS A2515 CG CD CE NZ REMARK 470 LYS A2529 CG CD CE NZ REMARK 470 GLN A2579 CG CD OE1 NE2 REMARK 470 ARG A2603 CG CD NE CZ NH1 NH2 REMARK 470 LYS A2608 CG CD CE NZ REMARK 470 GLU A2610 CG CD OE1 OE2 REMARK 470 PRO A2611 CG CD REMARK 470 ASN A2612 CB CG OD1 ND2 REMARK 470 ARG A2639 CG CD NE CZ NH1 NH2 REMARK 470 ARG A2640 CG CD NE CZ NH1 NH2 REMARK 470 GLN A2649 CG CD OE1 NE2 REMARK 470 LYS A2654 CG CD CE NZ REMARK 470 LYS A2699 CG CD CE NZ REMARK 470 THR A2707 OG1 CG2 REMARK 470 TYR A2708 CA C O CB CG CD1 CD2 REMARK 470 TYR A2708 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A2611 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A2144 -143.46 -87.23 REMARK 500 THR A2265 -13.00 -147.42 REMARK 500 GLU A2342 32.46 -144.01 REMARK 500 PHE A2362 152.50 179.81 REMARK 500 LEU A2381 -2.95 71.36 REMARK 500 ASN A2414 60.53 -100.67 REMARK 500 GLN A2427 -125.74 61.86 REMARK 500 ASP A2457 56.23 -68.49 REMARK 500 LYS A2493 161.91 179.04 REMARK 500 GLU A2520 -60.82 -96.61 REMARK 500 SER A2551 100.93 -165.81 REMARK 500 GLU A2555 -36.95 -37.24 REMARK 500 PRO A2611 -10.95 81.34 REMARK 500 ASN A2612 142.03 -174.65 REMARK 500 HIS A2615 45.78 -78.98 REMARK 500 THR A2627 -153.84 -110.37 REMARK 500 ASP A2636 58.96 27.17 REMARK 500 GLU A2637 72.26 39.02 REMARK 500 ASP A2638 -138.20 -129.66 REMARK 500 LEU A2645 55.03 -167.54 REMARK 500 THR A2646 69.74 -59.54 REMARK 500 ALA A2661 157.98 173.98 REMARK 500 PRO A2674 163.06 -43.65 REMARK 500 LYS A2699 116.42 -161.78 REMARK 500 THR A2707 53.08 -64.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 N-ACETYLGLUCOSAMINE (NAG): COVALENTLY ATTACHED TO REMARK 600 ASPARGINES 2236, 2356, 2431 AND 2554. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A5001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A2189 OD2 REMARK 620 2 VAL A2206 O 69.6 REMARK 620 3 ILE A2266 O 68.7 81.7 REMARK 620 4 ASP A2268 OD2 88.3 151.7 107.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A5002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A2383 OD2 REMARK 620 2 LEU A2400 O 69.8 REMARK 620 3 GLY A2455 O 70.9 89.9 REMARK 620 4 ASP A2457 OD2 79.6 142.4 100.7 REMARK 620 N 1 2 3 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DYK RELATED DB: PDB REMARK 900 LAMININ ALPHA 2 CHAIN LG4-5 DOMAIN PAIR REMARK 900 RELATED ID: 1OKQ RELATED DB: PDB REMARK 900 LAMININ ALPHA 2 CHAIN LG4-5 DOMAIN PAIR, CA1 SITE MUTANT REMARK 900 RELATED ID: 1QU0 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE FIFTH LAMININ G- LIKE MODULE OF THE MOUSE REMARK 900 LAMININ ALPHA2 CHAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE CRYSTALLIZED PROTEIN ACTUALLY CORRESPONDS REMARK 999 TO THE NCBI ENTRY NP_032507. REMARK 999 VECTOR-DERIVED N-TERMINAL APLA AND C-TERMINAL AAAHHHHHH. REMARK 999 RESIDUES 2476-2479 (SMKA, EXON 53) MISSING. RESIDUES 2566- REMARK 999 2578 REPLACED BY G.IT IS A DELETION MUTATION. DBREF 2WJS A 2132 2135 PDB 2WJS 2WJS 2132 2135 DBREF 2WJS A 2136 2475 UNP Q60675 LAMA2_MOUSE 2136 2475 DBREF 2WJS A 2480 2565 UNP Q60675 LAMA2_MOUSE 2480 2565 DBREF 2WJS A 2566 2566 PDB 2WJS 2WJS 2566 2566 DBREF 2WJS A 2579 2746 UNP Q60675 LAMA2_MOUSE 2579 2746 DBREF 2WJS A 2747 2755 PDB 2WJS 2WJS 2747 2755 SEQADV 2WJS ASP A 2205 UNP Q60675 ILE 2205 CONFLICT SEQADV 2WJS GLU A 2214 UNP Q60675 GLY 2214 CONFLICT SEQADV 2WJS TYR A 2215 UNP Q60675 PHE 2215 CONFLICT SEQADV 2WJS TYR A 2523 UNP Q60675 ASN 2523 CONFLICT SEQADV 2WJS ARG A 2613 UNP Q60675 LEU 2613 CONFLICT SEQADV 2WJS MET A 2642 UNP Q60675 ILE 2642 CONFLICT SEQRES 1 A 608 ALA PRO LEU ALA GLN ALA ASN SER ILE LYS VAL SER VAL SEQRES 2 A 608 SER SER GLY GLY ASP CYS VAL ARG THR TYR ARG PRO GLU SEQRES 3 A 608 ILE LYS LYS GLY SER TYR ASN ASN ILE VAL VAL HIS VAL SEQRES 4 A 608 LYS THR ALA VAL ALA ASP ASN LEU LEU PHE TYR LEU GLY SEQRES 5 A 608 SER ALA LYS PHE ILE ASP PHE LEU ALA ILE GLU MET ARG SEQRES 6 A 608 LYS GLY LYS VAL SER PHE LEU TRP ASP VAL GLY SER GLY SEQRES 7 A 608 VAL GLY ARG VAL GLU TYR PRO ASP LEU THR ILE ASP ASP SEQRES 8 A 608 SER TYR TRP TYR ARG ILE GLU ALA SER ARG THR GLY ARG SEQRES 9 A 608 ASN GLY SER ILE SER VAL ARG ALA LEU ASP GLY PRO LYS SEQRES 10 A 608 ALA SER MET VAL PRO SER THR TYR HIS SER VAL SER PRO SEQRES 11 A 608 PRO GLY TYR THR ILE LEU ASP VAL ASP ALA ASN ALA MET SEQRES 12 A 608 LEU PHE VAL GLY GLY LEU THR GLY LYS ILE LYS LYS ALA SEQRES 13 A 608 ASP ALA VAL ARG VAL ILE THR PHE THR GLY CYS MET GLY SEQRES 14 A 608 GLU THR TYR PHE ASP ASN LYS PRO ILE GLY LEU TRP ASN SEQRES 15 A 608 PHE ARG GLU LYS GLU GLY ASP CYS LYS GLY CYS THR VAL SEQRES 16 A 608 SER PRO GLN VAL GLU ASP SER GLU GLY THR ILE GLN PHE SEQRES 17 A 608 ASP GLY GLU GLY TYR ALA LEU VAL SER ARG PRO ILE ARG SEQRES 18 A 608 TRP TYR PRO ASN ILE SER THR VAL MET PHE LYS PHE ARG SEQRES 19 A 608 THR PHE SER SER SER ALA LEU LEU MET TYR LEU ALA THR SEQRES 20 A 608 ARG ASP LEU LYS ASP PHE MET SER VAL GLU LEU SER ASP SEQRES 21 A 608 GLY HIS VAL LYS VAL SER TYR ASP LEU GLY SER GLY MET SEQRES 22 A 608 THR SER VAL VAL SER ASN GLN ASN HIS ASN ASP GLY LYS SEQRES 23 A 608 TRP LYS ALA PHE THR LEU SER ARG ILE GLN LYS GLN ALA SEQRES 24 A 608 ASN ILE SER ILE VAL ASP ILE ASP SER ASN GLN GLU GLU SEQRES 25 A 608 ASN VAL ALA THR SER SER SER GLY ASN ASN PHE GLY LEU SEQRES 26 A 608 ASP LEU LYS ALA ASP ASP LYS ILE TYR PHE GLY GLY LEU SEQRES 27 A 608 PRO THR LEU ARG ASN LEU ARG PRO GLU VAL ASN VAL LYS SEQRES 28 A 608 LYS TYR SER GLY CYS LEU LYS ASP ILE GLU ILE SER ARG SEQRES 29 A 608 THR PRO TYR ASN ILE LEU SER SER PRO ASP TYR VAL GLY SEQRES 30 A 608 VAL THR LYS GLY CYS SER LEU GLU ASN VAL TYR THR VAL SEQRES 31 A 608 SER PHE PRO LYS PRO GLY PHE VAL GLU LEU ALA ALA VAL SEQRES 32 A 608 SER ILE ASP VAL GLY THR GLU ILE ASN LEU SER PHE SER SEQRES 33 A 608 THR ARG ASN GLU SER GLY ILE ILE LEU LEU GLY SER GLY SEQRES 34 A 608 GLY GLY GLN ALA TYR TYR ALA ILE PHE LEU ASN LYS GLY SEQRES 35 A 608 ARG LEU GLU VAL HIS LEU SER SER GLY THR ARG THR MET SEQRES 36 A 608 ARG LYS ILE VAL ILE LYS PRO GLU PRO ASN ARG PHE HIS SEQRES 37 A 608 ASP GLY ARG GLU HIS SER VAL HIS VAL GLU ARG THR ARG SEQRES 38 A 608 GLY ILE PHE THR VAL GLN ILE ASP GLU ASP ARG ARG HIS SEQRES 39 A 608 MET GLN ASN LEU THR GLU GLU GLN PRO ILE GLU VAL LYS SEQRES 40 A 608 LYS LEU PHE VAL GLY GLY ALA PRO PRO GLU PHE GLN PRO SEQRES 41 A 608 SER PRO LEU ARG ASN ILE PRO ALA PHE GLN GLY CYS VAL SEQRES 42 A 608 TRP ASN LEU VAL ILE ASN SER ILE PRO MET ASP PHE ALA SEQRES 43 A 608 GLN PRO ILE ALA PHE LYS ASN ALA ASP ILE GLY ARG CYS SEQRES 44 A 608 THR TYR GLN LYS PRO ARG GLU ASP GLU SER GLU ALA VAL SEQRES 45 A 608 PRO ALA GLU VAL ILE VAL GLN PRO GLN PRO VAL PRO THR SEQRES 46 A 608 PRO ALA PHE PRO PHE PRO ALA PRO THR MET VAL HIS GLY SEQRES 47 A 608 PRO ALA ALA ALA HIS HIS HIS HIS HIS HIS MODRES 2WJS ASN A 2236 ASN GLYCOSYLATION SITE MODRES 2WJS ASN A 2356 ASN GLYCOSYLATION SITE MODRES 2WJS ASN A 2431 ASN GLYCOSYLATION SITE MODRES 2WJS ASN A 2554 ASN GLYCOSYLATION SITE HET NAG A4001 14 HET NAG A4002 14 HET NAG A4003 14 HET NAG A4004 14 HET CA A5001 1 HET CA A5002 1 HET CA A5003 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 6 CA 3(CA 2+) FORMUL 9 HOH *60(H2 O) HELIX 1 1 ASN A 2503 SER A 2507 5 5 SHEET 1 AA 3 LEU A2275 VAL A2277 0 SHEET 2 AA 3 VAL A2151 TYR A2154 -1 O ARG A2152 N VAL A2277 SHEET 3 AA 3 GLU A2316 GLU A2318 -1 O GLU A2316 N THR A2153 SHEET 1 AB 4 ILE A2239 ALA A2243 0 SHEET 2 AB 4 TYR A2226 ARG A2232 -1 O ARG A2227 N ARG A2242 SHEET 3 AB 4 ASN A2164 VAL A2170 -1 O ASN A2164 N ARG A2232 SHEET 4 AB 4 TYR A2303 PHE A2304 -1 O TYR A2303 N VAL A2167 SHEET 1 AC 4 ASN A2177 LEU A2182 0 SHEET 2 AC 4 PHE A2190 MET A2195 -1 O LEU A2191 N LEU A2182 SHEET 3 AC 4 VAL A2200 ASP A2205 -1 O SER A2201 N GLU A2194 SHEET 4 AC 4 VAL A2213 GLU A2214 -1 O VAL A2213 N PHE A2202 SHEET 1 AD 6 THR A2336 ILE A2337 0 SHEET 2 AD 6 LEU A2492 ILE A2497 -1 O LEU A2492 N ILE A2337 SHEET 3 AD 6 ILE A2357 PHE A2364 -1 O MET A2361 N GLU A2496 SHEET 4 AD 6 LYS A2419 ILE A2426 -1 O LYS A2419 N PHE A2364 SHEET 5 AD 6 GLN A2429 ASP A2436 -1 O GLN A2429 N ILE A2426 SHEET 6 AD 6 GLU A2442 SER A2448 -1 O GLU A2443 N ILE A2434 SHEET 1 AE 2 THR A2336 ILE A2337 0 SHEET 2 AE 2 LEU A2492 ILE A2497 -1 O LEU A2492 N ILE A2337 SHEET 1 AF 6 ALA A2345 SER A2348 0 SHEET 2 AF 6 LYS A2463 PHE A2466 -1 O ILE A2464 N VAL A2347 SHEET 3 AF 6 SER A2370 ALA A2377 -1 O TYR A2375 N TYR A2465 SHEET 4 AF 6 PHE A2384 SER A2390 -1 O MET A2385 N LEU A2376 SHEET 5 AF 6 VAL A2394 ASP A2399 -1 O LYS A2395 N GLU A2388 SHEET 6 AF 6 THR A2405 VAL A2408 -1 O THR A2405 N TYR A2398 SHEET 1 AG 6 THR A2524 VAL A2525 0 SHEET 2 AG 6 VAL A2680 ILE A2685 -1 O VAL A2680 N VAL A2525 SHEET 3 AG 6 GLU A2545 PHE A2550 -1 O ASN A2547 N VAL A2684 SHEET 4 AG 6 HIS A2620 ARG A2626 -1 O HIS A2620 N PHE A2550 SHEET 5 AG 6 PHE A2631 ILE A2635 -1 O THR A2632 N GLU A2625 SHEET 6 AG 6 HIS A2641 GLN A2643 -1 O HIS A2641 N VAL A2633 SHEET 1 AH 2 THR A2524 VAL A2525 0 SHEET 2 AH 2 VAL A2680 ILE A2685 -1 O VAL A2680 N VAL A2525 SHEET 1 AI 3 LEU A2656 VAL A2658 0 SHEET 2 AI 3 VAL A2533 LEU A2535 -1 O VAL A2533 N VAL A2658 SHEET 3 AI 3 ALA A2697 PHE A2698 -1 O ALA A2697 N GLU A2534 SHEET 1 AJ 3 TYR A2581 LEU A2586 0 SHEET 2 AJ 3 LEU A2591 SER A2596 -1 O GLU A2592 N PHE A2585 SHEET 3 AJ 3 ARG A2603 ILE A2607 -1 O ARG A2603 N LEU A2595 SSBOND 1 CYS A 2150 CYS A 2321 1555 1555 2.04 SSBOND 2 CYS A 2298 CYS A 2324 1555 1555 2.04 SSBOND 3 CYS A 2491 CYS A 2517 1555 1555 2.04 SSBOND 4 CYS A 2679 CYS A 2706 1555 1555 2.03 LINK ND2 ASN A2236 C1 NAG A4001 1555 1555 1.45 LINK ND2 ASN A2356 C1 NAG A4002 1555 1555 1.45 LINK ND2 ASN A2431 C1 NAG A4003 1555 1555 1.45 LINK ND2 ASN A2554 C1 NAG A4004 1555 1555 1.45 LINK OD2 ASP A2189 CA CA A5001 1555 1555 3.00 LINK O VAL A2206 CA CA A5001 1555 1555 2.39 LINK O ILE A2266 CA CA A5001 1555 1555 2.48 LINK OD2 ASP A2268 CA CA A5001 1555 1555 2.23 LINK OD2 ASP A2383 CA CA A5002 1555 1555 2.73 LINK OD1 ASP A2383 CA CA A5003 1555 1555 2.67 LINK O LEU A2400 CA CA A5002 1555 1555 2.63 LINK O GLY A2455 CA CA A5002 1555 1555 2.15 LINK OD2 ASP A2457 CA CA A5002 1555 1555 2.41 CRYST1 138.829 138.829 73.895 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007203 0.004159 0.000000 0.00000 SCALE2 0.000000 0.008317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013533 0.00000