HEADER TRANSFERASE 05-JUN-09 2WK5 TITLE STRUCTURAL FEATURES OF NATIVE HUMAN THYMIDINE PHOSPHORYLASE AND IN TITLE 2 COMPLEX WITH 5-IODOURACIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE PHOSPHORYLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TDRPASE, PLATELET-DERIVED ENDOTHELIAL CELL GROWTH FACTOR, COMPND 5 GLIOSTATIN, TP, PD-ECGF; COMPND 6 EC: 2.4.2.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PYSBLIC KEYWDS GLYCOSYLTRANSFERASE, DEVELOPMENTAL PROTEIN, ANGIOGENESIS, 5- KEYWDS 2 IODOURACIL, GROWTH FACTOR, ENZYME KINETICS, DIFFERENTIATION, DISEASE KEYWDS 3 MUTATION, THYMIDINE PHOSPHORYLASE, CHEMOTAXIS, TRANSFERASE, KEYWDS 4 MUTAGENESIS, POLYMORPHISM EXPDTA X-RAY DIFFRACTION AUTHOR E.MITSIKI,A.C.PAPAGEORGIOU,S.IYER,N.THIYAGARAJAN,S.H.PRIOR,D.SLEEP, AUTHOR 2 C.FINNIS,K.R.ACHARYA REVDAT 3 13-DEC-23 2WK5 1 REMARK REVDAT 2 28-JUL-09 2WK5 1 JRNL REVDAT 1 07-JUL-09 2WK5 0 JRNL AUTH E.MITSIKI,A.C.PAPAGEORGIOU,S.IYER,N.THIYAGARAJAN,S.H.PRIOR, JRNL AUTH 2 D.SLEEP,C.FINNIS,K.R.ACHARYA JRNL TITL STRUCTURES OF NATIVE HUMAN THYMIDINE PHOSPHORYLASE AND IN JRNL TITL 2 COMPLEX WITH 5-IODOURACIL. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 386 666 2009 JRNL REFN ISSN 0006-291X JRNL PMID 19555658 JRNL DOI 10.1016/J.BBRC.2009.06.104 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 67592.210 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 85.2 REMARK 3 NUMBER OF REFLECTIONS : 27431 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.400 REMARK 3 FREE R VALUE TEST SET COUNT : 926 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.97 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.16 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 56.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2959 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 114 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 13010 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 1.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.96000 REMARK 3 B22 (A**2) : -3.52000 REMARK 3 B33 (A**2) : 11.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.47 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.51 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.030 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 38.06 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : GOL.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : GOL.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2WK5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1290040055. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33291 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 39.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.70 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UOU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM-ACETATE (PH 5.2), 25% PEG REMARK 280 4000, 0.1M AMMONIUM ACETATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.59400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 MET A 5 REMARK 465 THR A 6 REMARK 465 PRO A 7 REMARK 465 GLY A 8 REMARK 465 THR A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 PRO A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 PRO A 15 REMARK 465 GLY A 16 REMARK 465 ASP A 17 REMARK 465 PHE A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 GLU A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 GLN A 24 REMARK 465 GLY A 25 REMARK 465 LEU A 26 REMARK 465 PRO A 27 REMARK 465 ASP A 28 REMARK 465 PRO A 29 REMARK 465 SER A 30 REMARK 465 PRO A 31 REMARK 465 GLN A 481 REMARK 465 GLN A 482 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 MET B 5 REMARK 465 THR B 6 REMARK 465 PRO B 7 REMARK 465 GLY B 8 REMARK 465 THR B 9 REMARK 465 GLY B 10 REMARK 465 ALA B 11 REMARK 465 PRO B 12 REMARK 465 PRO B 13 REMARK 465 ALA B 14 REMARK 465 PRO B 15 REMARK 465 GLY B 16 REMARK 465 ASP B 17 REMARK 465 PHE B 18 REMARK 465 SER B 19 REMARK 465 GLY B 20 REMARK 465 GLU B 21 REMARK 465 GLY B 22 REMARK 465 SER B 23 REMARK 465 GLN B 24 REMARK 465 GLY B 25 REMARK 465 LEU B 26 REMARK 465 PRO B 27 REMARK 465 ASP B 28 REMARK 465 PRO B 29 REMARK 465 SER B 30 REMARK 465 PRO B 31 REMARK 465 GLU B 106 REMARK 465 ALA B 107 REMARK 465 GLN B 482 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ALA C 3 REMARK 465 LEU C 4 REMARK 465 MET C 5 REMARK 465 THR C 6 REMARK 465 PRO C 7 REMARK 465 GLY C 8 REMARK 465 THR C 9 REMARK 465 GLY C 10 REMARK 465 ALA C 11 REMARK 465 PRO C 12 REMARK 465 PRO C 13 REMARK 465 ALA C 14 REMARK 465 PRO C 15 REMARK 465 GLY C 16 REMARK 465 ASP C 17 REMARK 465 PHE C 18 REMARK 465 SER C 19 REMARK 465 GLY C 20 REMARK 465 GLU C 21 REMARK 465 GLY C 22 REMARK 465 SER C 23 REMARK 465 GLN C 24 REMARK 465 GLY C 25 REMARK 465 LEU C 26 REMARK 465 PRO C 27 REMARK 465 ASP C 28 REMARK 465 PRO C 29 REMARK 465 SER C 30 REMARK 465 PRO C 31 REMARK 465 GLU C 32 REMARK 465 PRO C 466 REMARK 465 PHE C 467 REMARK 465 ALA C 468 REMARK 465 GLN C 481 REMARK 465 GLN C 482 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 ALA D 3 REMARK 465 LEU D 4 REMARK 465 MET D 5 REMARK 465 THR D 6 REMARK 465 PRO D 7 REMARK 465 GLY D 8 REMARK 465 THR D 9 REMARK 465 GLY D 10 REMARK 465 ALA D 11 REMARK 465 PRO D 12 REMARK 465 PRO D 13 REMARK 465 ALA D 14 REMARK 465 PRO D 15 REMARK 465 GLY D 16 REMARK 465 ASP D 17 REMARK 465 PHE D 18 REMARK 465 SER D 19 REMARK 465 GLY D 20 REMARK 465 GLU D 21 REMARK 465 GLY D 22 REMARK 465 SER D 23 REMARK 465 GLN D 24 REMARK 465 GLY D 25 REMARK 465 LEU D 26 REMARK 465 PRO D 27 REMARK 465 ASP D 28 REMARK 465 PRO D 29 REMARK 465 SER D 30 REMARK 465 PRO D 31 REMARK 465 GLU D 32 REMARK 465 PRO D 33 REMARK 465 LEU D 102 REMARK 465 SER D 362 REMARK 465 GLN D 481 REMARK 465 GLN D 482 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 PRO A 480 CA C O CB CG CD REMARK 470 ARG B 109 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 481 CA C O CB CG CD OE1 REMARK 470 GLN B 481 NE2 REMARK 470 PRO C 480 CA C O CB CG CD REMARK 470 LYS D 34 CG CD CE NZ REMARK 470 SER D 409 OG REMARK 470 ARG D 410 CG CD NE CZ NH1 NH2 REMARK 470 PRO D 480 CA C O CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY D 363 NH1 ARG D 368 1.57 REMARK 500 O SER D 364 NH1 ARG D 368 1.80 REMARK 500 O GLY D 163 O GLY D 351 1.81 REMARK 500 O PRO D 365 N ARG D 368 2.04 REMARK 500 CZ PHE D 164 OE1 GLN D 350 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 365 C - N - CD ANGL. DEV. = -21.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 33 95.33 -48.66 REMARK 500 ARG A 109 -83.61 -14.27 REMARK 500 GLN A 110 -5.62 -53.76 REMARK 500 THR A 118 -98.34 -120.46 REMARK 500 SER A 144 -156.13 -115.88 REMARK 500 GLU A 159 4.67 -64.63 REMARK 500 GLN A 187 160.28 -42.71 REMARK 500 SER A 188 -161.67 -163.12 REMARK 500 VAL A 192 48.81 32.33 REMARK 500 ASP A 209 77.40 -67.81 REMARK 500 VAL A 224 -15.88 -45.47 REMARK 500 GLN A 247 -5.80 -59.50 REMARK 500 HIS A 283 -72.78 -144.23 REMARK 500 ASP A 295 -94.45 -41.07 REMARK 500 ARG A 376 -96.05 -53.28 REMARK 500 GLN A 378 110.40 -165.16 REMARK 500 ARG A 410 108.29 -164.74 REMARK 500 ALA A 411 144.62 -25.73 REMARK 500 PRO A 414 177.28 -55.71 REMARK 500 ALA A 446 168.36 163.39 REMARK 500 ALA A 474 -98.38 -100.18 REMARK 500 LEU B 112 89.74 -49.53 REMARK 500 CYS B 136 22.87 -76.18 REMARK 500 PRO B 141 62.13 -100.30 REMARK 500 VAL B 192 58.82 31.98 REMARK 500 ALA B 206 17.78 58.48 REMARK 500 ARG B 265 63.22 -100.12 REMARK 500 MET B 273 44.52 -141.00 REMARK 500 HIS B 283 -60.84 -124.25 REMARK 500 PRO B 365 -6.38 -53.51 REMARK 500 VAL B 389 103.12 -39.66 REMARK 500 LEU B 391 156.24 173.28 REMARK 500 ARG B 408 79.99 -65.63 REMARK 500 ALA B 411 -157.40 -156.74 REMARK 500 LEU B 417 0.37 -62.74 REMARK 500 ARG B 433 99.04 -21.15 REMARK 500 ALA B 446 -177.54 -178.56 REMARK 500 ASP B 463 49.07 -93.26 REMARK 500 ALA B 474 -115.78 -97.30 REMARK 500 PRO B 479 96.80 -62.25 REMARK 500 PRO B 480 177.85 -57.39 REMARK 500 LYS C 34 120.60 171.86 REMARK 500 GLN C 35 -170.77 -51.40 REMARK 500 ARG C 109 -84.35 -40.18 REMARK 500 GLN C 111 74.14 -105.18 REMARK 500 ASP C 114 156.22 169.97 REMARK 500 ALA C 135 38.30 -87.93 REMARK 500 PHE C 164 97.72 -63.69 REMARK 500 SER C 169 154.58 -43.44 REMARK 500 LEU C 176 -70.98 -41.87 REMARK 500 REMARK 500 THIS ENTRY HAS 123 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1481 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J0F RELATED DB: PDB REMARK 900 STRUCTURAL BASIS FOR NON-COMPETITIVE PRODUCT INHIBITION IN HUMAN REMARK 900 THYMIDINE PHOSPHORYLASE: IMPLICATION FOR DRUG DESIGN REMARK 900 RELATED ID: 1UOU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HUMAN THYMIDINE PHOSPHORYLASE IN COMPLEX WITH REMARK 900 A SMALL MOLECULE INHIBITOR REMARK 900 RELATED ID: 2WK6 RELATED DB: PDB REMARK 900 STRUCTURAL FEATURES OF NATIVE HUMAN THYMIDINE PHOSPHORYLASE AND IN REMARK 900 COMPLEX WITH 5- IODOURACIL DBREF 2WK5 A 1 482 UNP P19971 TYPH_HUMAN 1 482 DBREF 2WK5 B 1 482 UNP P19971 TYPH_HUMAN 1 482 DBREF 2WK5 C 1 482 UNP P19971 TYPH_HUMAN 1 482 DBREF 2WK5 D 1 482 UNP P19971 TYPH_HUMAN 1 482 SEQRES 1 A 482 MET ALA ALA LEU MET THR PRO GLY THR GLY ALA PRO PRO SEQRES 2 A 482 ALA PRO GLY ASP PHE SER GLY GLU GLY SER GLN GLY LEU SEQRES 3 A 482 PRO ASP PRO SER PRO GLU PRO LYS GLN LEU PRO GLU LEU SEQRES 4 A 482 ILE ARG MET LYS ARG ASP GLY GLY ARG LEU SER GLU ALA SEQRES 5 A 482 ASP ILE ARG GLY PHE VAL ALA ALA VAL VAL ASN GLY SER SEQRES 6 A 482 ALA GLN GLY ALA GLN ILE GLY ALA MET LEU MET ALA ILE SEQRES 7 A 482 ARG LEU ARG GLY MET ASP LEU GLU GLU THR SER VAL LEU SEQRES 8 A 482 THR GLN ALA LEU ALA GLN SER GLY GLN GLN LEU GLU TRP SEQRES 9 A 482 PRO GLU ALA TRP ARG GLN GLN LEU VAL ASP LYS HIS SER SEQRES 10 A 482 THR GLY GLY VAL GLY ASP LYS VAL SER LEU VAL LEU ALA SEQRES 11 A 482 PRO ALA LEU ALA ALA CYS GLY CYS LYS VAL PRO MET ILE SEQRES 12 A 482 SER GLY ARG GLY LEU GLY HIS THR GLY GLY THR LEU ASP SEQRES 13 A 482 LYS LEU GLU SER ILE PRO GLY PHE ASN VAL ILE GLN SER SEQRES 14 A 482 PRO GLU GLN MET GLN VAL LEU LEU ASP GLN ALA GLY CYS SEQRES 15 A 482 CYS ILE VAL GLY GLN SER GLU GLN LEU VAL PRO ALA ASP SEQRES 16 A 482 GLY ILE LEU TYR ALA ALA ARG ASP VAL THR ALA THR VAL SEQRES 17 A 482 ASP SER LEU PRO LEU ILE THR ALA SER ILE LEU SER LYS SEQRES 18 A 482 LYS LEU VAL GLU GLY LEU SER ALA LEU VAL VAL ASP VAL SEQRES 19 A 482 LYS PHE GLY GLY ALA ALA VAL PHE PRO ASN GLN GLU GLN SEQRES 20 A 482 ALA ARG GLU LEU ALA LYS THR LEU VAL GLY VAL GLY ALA SEQRES 21 A 482 SER LEU GLY LEU ARG VAL ALA ALA ALA LEU THR ALA MET SEQRES 22 A 482 ASP LYS PRO LEU GLY ARG CYS VAL GLY HIS ALA LEU GLU SEQRES 23 A 482 VAL GLU GLU ALA LEU LEU CYS MET ASP GLY ALA GLY PRO SEQRES 24 A 482 PRO ASP LEU ARG ASP LEU VAL THR THR LEU GLY GLY ALA SEQRES 25 A 482 LEU LEU TRP LEU SER GLY HIS ALA GLY THR GLN ALA GLN SEQRES 26 A 482 GLY ALA ALA ARG VAL ALA ALA ALA LEU ASP ASP GLY SER SEQRES 27 A 482 ALA LEU GLY ARG PHE GLU ARG MET LEU ALA ALA GLN GLY SEQRES 28 A 482 VAL ASP PRO GLY LEU ALA ARG ALA LEU CYS SER GLY SER SEQRES 29 A 482 PRO ALA GLU ARG ARG GLN LEU LEU PRO ARG ALA ARG GLU SEQRES 30 A 482 GLN GLU GLU LEU LEU ALA PRO ALA ASP GLY THR VAL GLU SEQRES 31 A 482 LEU VAL ARG ALA LEU PRO LEU ALA LEU VAL LEU HIS GLU SEQRES 32 A 482 LEU GLY ALA GLY ARG SER ARG ALA GLY GLU PRO LEU ARG SEQRES 33 A 482 LEU GLY VAL GLY ALA GLU LEU LEU VAL ASP VAL GLY GLN SEQRES 34 A 482 ARG LEU ARG ARG GLY THR PRO TRP LEU ARG VAL HIS ARG SEQRES 35 A 482 ASP GLY PRO ALA LEU SER GLY PRO GLN SER ARG ALA LEU SEQRES 36 A 482 GLN GLU ALA LEU VAL LEU SER ASP ARG ALA PRO PHE ALA SEQRES 37 A 482 ALA PRO SER PRO PHE ALA GLU LEU VAL LEU PRO PRO GLN SEQRES 38 A 482 GLN SEQRES 1 B 482 MET ALA ALA LEU MET THR PRO GLY THR GLY ALA PRO PRO SEQRES 2 B 482 ALA PRO GLY ASP PHE SER GLY GLU GLY SER GLN GLY LEU SEQRES 3 B 482 PRO ASP PRO SER PRO GLU PRO LYS GLN LEU PRO GLU LEU SEQRES 4 B 482 ILE ARG MET LYS ARG ASP GLY GLY ARG LEU SER GLU ALA SEQRES 5 B 482 ASP ILE ARG GLY PHE VAL ALA ALA VAL VAL ASN GLY SER SEQRES 6 B 482 ALA GLN GLY ALA GLN ILE GLY ALA MET LEU MET ALA ILE SEQRES 7 B 482 ARG LEU ARG GLY MET ASP LEU GLU GLU THR SER VAL LEU SEQRES 8 B 482 THR GLN ALA LEU ALA GLN SER GLY GLN GLN LEU GLU TRP SEQRES 9 B 482 PRO GLU ALA TRP ARG GLN GLN LEU VAL ASP LYS HIS SER SEQRES 10 B 482 THR GLY GLY VAL GLY ASP LYS VAL SER LEU VAL LEU ALA SEQRES 11 B 482 PRO ALA LEU ALA ALA CYS GLY CYS LYS VAL PRO MET ILE SEQRES 12 B 482 SER GLY ARG GLY LEU GLY HIS THR GLY GLY THR LEU ASP SEQRES 13 B 482 LYS LEU GLU SER ILE PRO GLY PHE ASN VAL ILE GLN SER SEQRES 14 B 482 PRO GLU GLN MET GLN VAL LEU LEU ASP GLN ALA GLY CYS SEQRES 15 B 482 CYS ILE VAL GLY GLN SER GLU GLN LEU VAL PRO ALA ASP SEQRES 16 B 482 GLY ILE LEU TYR ALA ALA ARG ASP VAL THR ALA THR VAL SEQRES 17 B 482 ASP SER LEU PRO LEU ILE THR ALA SER ILE LEU SER LYS SEQRES 18 B 482 LYS LEU VAL GLU GLY LEU SER ALA LEU VAL VAL ASP VAL SEQRES 19 B 482 LYS PHE GLY GLY ALA ALA VAL PHE PRO ASN GLN GLU GLN SEQRES 20 B 482 ALA ARG GLU LEU ALA LYS THR LEU VAL GLY VAL GLY ALA SEQRES 21 B 482 SER LEU GLY LEU ARG VAL ALA ALA ALA LEU THR ALA MET SEQRES 22 B 482 ASP LYS PRO LEU GLY ARG CYS VAL GLY HIS ALA LEU GLU SEQRES 23 B 482 VAL GLU GLU ALA LEU LEU CYS MET ASP GLY ALA GLY PRO SEQRES 24 B 482 PRO ASP LEU ARG ASP LEU VAL THR THR LEU GLY GLY ALA SEQRES 25 B 482 LEU LEU TRP LEU SER GLY HIS ALA GLY THR GLN ALA GLN SEQRES 26 B 482 GLY ALA ALA ARG VAL ALA ALA ALA LEU ASP ASP GLY SER SEQRES 27 B 482 ALA LEU GLY ARG PHE GLU ARG MET LEU ALA ALA GLN GLY SEQRES 28 B 482 VAL ASP PRO GLY LEU ALA ARG ALA LEU CYS SER GLY SER SEQRES 29 B 482 PRO ALA GLU ARG ARG GLN LEU LEU PRO ARG ALA ARG GLU SEQRES 30 B 482 GLN GLU GLU LEU LEU ALA PRO ALA ASP GLY THR VAL GLU SEQRES 31 B 482 LEU VAL ARG ALA LEU PRO LEU ALA LEU VAL LEU HIS GLU SEQRES 32 B 482 LEU GLY ALA GLY ARG SER ARG ALA GLY GLU PRO LEU ARG SEQRES 33 B 482 LEU GLY VAL GLY ALA GLU LEU LEU VAL ASP VAL GLY GLN SEQRES 34 B 482 ARG LEU ARG ARG GLY THR PRO TRP LEU ARG VAL HIS ARG SEQRES 35 B 482 ASP GLY PRO ALA LEU SER GLY PRO GLN SER ARG ALA LEU SEQRES 36 B 482 GLN GLU ALA LEU VAL LEU SER ASP ARG ALA PRO PHE ALA SEQRES 37 B 482 ALA PRO SER PRO PHE ALA GLU LEU VAL LEU PRO PRO GLN SEQRES 38 B 482 GLN SEQRES 1 C 482 MET ALA ALA LEU MET THR PRO GLY THR GLY ALA PRO PRO SEQRES 2 C 482 ALA PRO GLY ASP PHE SER GLY GLU GLY SER GLN GLY LEU SEQRES 3 C 482 PRO ASP PRO SER PRO GLU PRO LYS GLN LEU PRO GLU LEU SEQRES 4 C 482 ILE ARG MET LYS ARG ASP GLY GLY ARG LEU SER GLU ALA SEQRES 5 C 482 ASP ILE ARG GLY PHE VAL ALA ALA VAL VAL ASN GLY SER SEQRES 6 C 482 ALA GLN GLY ALA GLN ILE GLY ALA MET LEU MET ALA ILE SEQRES 7 C 482 ARG LEU ARG GLY MET ASP LEU GLU GLU THR SER VAL LEU SEQRES 8 C 482 THR GLN ALA LEU ALA GLN SER GLY GLN GLN LEU GLU TRP SEQRES 9 C 482 PRO GLU ALA TRP ARG GLN GLN LEU VAL ASP LYS HIS SER SEQRES 10 C 482 THR GLY GLY VAL GLY ASP LYS VAL SER LEU VAL LEU ALA SEQRES 11 C 482 PRO ALA LEU ALA ALA CYS GLY CYS LYS VAL PRO MET ILE SEQRES 12 C 482 SER GLY ARG GLY LEU GLY HIS THR GLY GLY THR LEU ASP SEQRES 13 C 482 LYS LEU GLU SER ILE PRO GLY PHE ASN VAL ILE GLN SER SEQRES 14 C 482 PRO GLU GLN MET GLN VAL LEU LEU ASP GLN ALA GLY CYS SEQRES 15 C 482 CYS ILE VAL GLY GLN SER GLU GLN LEU VAL PRO ALA ASP SEQRES 16 C 482 GLY ILE LEU TYR ALA ALA ARG ASP VAL THR ALA THR VAL SEQRES 17 C 482 ASP SER LEU PRO LEU ILE THR ALA SER ILE LEU SER LYS SEQRES 18 C 482 LYS LEU VAL GLU GLY LEU SER ALA LEU VAL VAL ASP VAL SEQRES 19 C 482 LYS PHE GLY GLY ALA ALA VAL PHE PRO ASN GLN GLU GLN SEQRES 20 C 482 ALA ARG GLU LEU ALA LYS THR LEU VAL GLY VAL GLY ALA SEQRES 21 C 482 SER LEU GLY LEU ARG VAL ALA ALA ALA LEU THR ALA MET SEQRES 22 C 482 ASP LYS PRO LEU GLY ARG CYS VAL GLY HIS ALA LEU GLU SEQRES 23 C 482 VAL GLU GLU ALA LEU LEU CYS MET ASP GLY ALA GLY PRO SEQRES 24 C 482 PRO ASP LEU ARG ASP LEU VAL THR THR LEU GLY GLY ALA SEQRES 25 C 482 LEU LEU TRP LEU SER GLY HIS ALA GLY THR GLN ALA GLN SEQRES 26 C 482 GLY ALA ALA ARG VAL ALA ALA ALA LEU ASP ASP GLY SER SEQRES 27 C 482 ALA LEU GLY ARG PHE GLU ARG MET LEU ALA ALA GLN GLY SEQRES 28 C 482 VAL ASP PRO GLY LEU ALA ARG ALA LEU CYS SER GLY SER SEQRES 29 C 482 PRO ALA GLU ARG ARG GLN LEU LEU PRO ARG ALA ARG GLU SEQRES 30 C 482 GLN GLU GLU LEU LEU ALA PRO ALA ASP GLY THR VAL GLU SEQRES 31 C 482 LEU VAL ARG ALA LEU PRO LEU ALA LEU VAL LEU HIS GLU SEQRES 32 C 482 LEU GLY ALA GLY ARG SER ARG ALA GLY GLU PRO LEU ARG SEQRES 33 C 482 LEU GLY VAL GLY ALA GLU LEU LEU VAL ASP VAL GLY GLN SEQRES 34 C 482 ARG LEU ARG ARG GLY THR PRO TRP LEU ARG VAL HIS ARG SEQRES 35 C 482 ASP GLY PRO ALA LEU SER GLY PRO GLN SER ARG ALA LEU SEQRES 36 C 482 GLN GLU ALA LEU VAL LEU SER ASP ARG ALA PRO PHE ALA SEQRES 37 C 482 ALA PRO SER PRO PHE ALA GLU LEU VAL LEU PRO PRO GLN SEQRES 38 C 482 GLN SEQRES 1 D 482 MET ALA ALA LEU MET THR PRO GLY THR GLY ALA PRO PRO SEQRES 2 D 482 ALA PRO GLY ASP PHE SER GLY GLU GLY SER GLN GLY LEU SEQRES 3 D 482 PRO ASP PRO SER PRO GLU PRO LYS GLN LEU PRO GLU LEU SEQRES 4 D 482 ILE ARG MET LYS ARG ASP GLY GLY ARG LEU SER GLU ALA SEQRES 5 D 482 ASP ILE ARG GLY PHE VAL ALA ALA VAL VAL ASN GLY SER SEQRES 6 D 482 ALA GLN GLY ALA GLN ILE GLY ALA MET LEU MET ALA ILE SEQRES 7 D 482 ARG LEU ARG GLY MET ASP LEU GLU GLU THR SER VAL LEU SEQRES 8 D 482 THR GLN ALA LEU ALA GLN SER GLY GLN GLN LEU GLU TRP SEQRES 9 D 482 PRO GLU ALA TRP ARG GLN GLN LEU VAL ASP LYS HIS SER SEQRES 10 D 482 THR GLY GLY VAL GLY ASP LYS VAL SER LEU VAL LEU ALA SEQRES 11 D 482 PRO ALA LEU ALA ALA CYS GLY CYS LYS VAL PRO MET ILE SEQRES 12 D 482 SER GLY ARG GLY LEU GLY HIS THR GLY GLY THR LEU ASP SEQRES 13 D 482 LYS LEU GLU SER ILE PRO GLY PHE ASN VAL ILE GLN SER SEQRES 14 D 482 PRO GLU GLN MET GLN VAL LEU LEU ASP GLN ALA GLY CYS SEQRES 15 D 482 CYS ILE VAL GLY GLN SER GLU GLN LEU VAL PRO ALA ASP SEQRES 16 D 482 GLY ILE LEU TYR ALA ALA ARG ASP VAL THR ALA THR VAL SEQRES 17 D 482 ASP SER LEU PRO LEU ILE THR ALA SER ILE LEU SER LYS SEQRES 18 D 482 LYS LEU VAL GLU GLY LEU SER ALA LEU VAL VAL ASP VAL SEQRES 19 D 482 LYS PHE GLY GLY ALA ALA VAL PHE PRO ASN GLN GLU GLN SEQRES 20 D 482 ALA ARG GLU LEU ALA LYS THR LEU VAL GLY VAL GLY ALA SEQRES 21 D 482 SER LEU GLY LEU ARG VAL ALA ALA ALA LEU THR ALA MET SEQRES 22 D 482 ASP LYS PRO LEU GLY ARG CYS VAL GLY HIS ALA LEU GLU SEQRES 23 D 482 VAL GLU GLU ALA LEU LEU CYS MET ASP GLY ALA GLY PRO SEQRES 24 D 482 PRO ASP LEU ARG ASP LEU VAL THR THR LEU GLY GLY ALA SEQRES 25 D 482 LEU LEU TRP LEU SER GLY HIS ALA GLY THR GLN ALA GLN SEQRES 26 D 482 GLY ALA ALA ARG VAL ALA ALA ALA LEU ASP ASP GLY SER SEQRES 27 D 482 ALA LEU GLY ARG PHE GLU ARG MET LEU ALA ALA GLN GLY SEQRES 28 D 482 VAL ASP PRO GLY LEU ALA ARG ALA LEU CYS SER GLY SER SEQRES 29 D 482 PRO ALA GLU ARG ARG GLN LEU LEU PRO ARG ALA ARG GLU SEQRES 30 D 482 GLN GLU GLU LEU LEU ALA PRO ALA ASP GLY THR VAL GLU SEQRES 31 D 482 LEU VAL ARG ALA LEU PRO LEU ALA LEU VAL LEU HIS GLU SEQRES 32 D 482 LEU GLY ALA GLY ARG SER ARG ALA GLY GLU PRO LEU ARG SEQRES 33 D 482 LEU GLY VAL GLY ALA GLU LEU LEU VAL ASP VAL GLY GLN SEQRES 34 D 482 ARG LEU ARG ARG GLY THR PRO TRP LEU ARG VAL HIS ARG SEQRES 35 D 482 ASP GLY PRO ALA LEU SER GLY PRO GLN SER ARG ALA LEU SEQRES 36 D 482 GLN GLU ALA LEU VAL LEU SER ASP ARG ALA PRO PHE ALA SEQRES 37 D 482 ALA PRO SER PRO PHE ALA GLU LEU VAL LEU PRO PRO GLN SEQRES 38 D 482 GLN HET GOL B1481 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *18(H2 O) HELIX 1 1 GLN A 35 ASP A 45 1 11 HELIX 2 2 SER A 50 GLY A 64 1 15 HELIX 3 3 GLN A 67 GLY A 82 1 16 HELIX 4 4 ASP A 84 GLN A 97 1 14 HELIX 5 5 TRP A 108 GLN A 111 5 4 HELIX 6 6 VAL A 125 CYS A 136 1 12 HELIX 7 7 GLY A 153 GLU A 159 1 7 HELIX 8 8 SER A 169 ALA A 180 1 12 HELIX 9 9 VAL A 192 THR A 205 1 14 HELIX 10 10 SER A 210 GLY A 226 1 17 HELIX 11 11 GLN A 245 GLY A 263 1 19 HELIX 12 12 HIS A 283 GLY A 296 1 14 HELIX 13 13 PRO A 299 SER A 317 1 19 HELIX 14 14 THR A 322 ASP A 336 1 15 HELIX 15 15 GLY A 337 GLN A 350 1 14 HELIX 16 16 ASP A 353 GLY A 363 1 11 HELIX 17 17 SER A 364 LEU A 372 1 9 HELIX 18 18 ARG A 393 LEU A 404 1 12 HELIX 19 19 SER A 448 GLU A 457 1 10 HELIX 20 20 GLN B 35 GLY B 46 1 12 HELIX 21 21 SER B 50 ASN B 63 1 14 HELIX 22 22 GLN B 67 GLY B 82 1 16 HELIX 23 23 ASP B 84 GLN B 97 1 14 HELIX 24 24 LYS B 124 ALA B 134 1 11 HELIX 25 25 GLY B 153 GLU B 159 1 7 HELIX 26 26 SER B 169 ALA B 180 1 12 HELIX 27 27 VAL B 192 VAL B 204 1 13 HELIX 28 28 SER B 210 LEU B 223 1 14 HELIX 29 29 GLN B 245 LEU B 262 1 18 HELIX 30 30 LEU B 285 ASP B 295 1 11 HELIX 31 31 PRO B 299 SER B 317 1 19 HELIX 32 32 THR B 322 GLY B 337 1 16 HELIX 33 33 GLY B 337 GLN B 350 1 14 HELIX 34 34 ASP B 353 GLY B 363 1 11 HELIX 35 35 ALA B 366 LEU B 372 1 7 HELIX 36 36 ARG B 393 LEU B 404 1 12 HELIX 37 37 SER B 448 ALA B 458 1 11 HELIX 38 38 GLN C 35 ASP C 45 1 11 HELIX 39 39 SER C 50 ASN C 63 1 14 HELIX 40 40 GLN C 67 GLY C 82 1 16 HELIX 41 41 ASP C 84 GLN C 97 1 14 HELIX 42 42 LYS C 124 ALA C 135 1 12 HELIX 43 43 GLY C 153 SER C 160 1 8 HELIX 44 44 GLU C 171 ALA C 180 1 10 HELIX 45 45 VAL C 192 ALA C 206 1 15 HELIX 46 46 SER C 210 GLU C 225 1 16 HELIX 47 47 ASN C 244 GLU C 246 5 3 HELIX 48 48 GLN C 247 LEU C 262 1 16 HELIX 49 49 HIS C 283 ASP C 295 1 13 HELIX 50 50 PRO C 299 SER C 317 1 19 HELIX 51 51 THR C 322 GLY C 337 1 16 HELIX 52 52 GLY C 337 ALA C 348 1 12 HELIX 53 53 ALA C 349 GLY C 351 5 3 HELIX 54 54 ASP C 353 GLY C 363 1 11 HELIX 55 55 SER C 364 LEU C 371 1 8 HELIX 56 56 ARG C 393 GLU C 403 1 11 HELIX 57 57 SER C 448 GLU C 457 1 10 HELIX 58 58 GLN D 35 ASP D 45 1 11 HELIX 59 59 SER D 50 ASN D 63 1 14 HELIX 60 60 GLN D 67 GLY D 82 1 16 HELIX 61 61 ASP D 84 GLN D 97 1 14 HELIX 62 62 PRO D 105 ARG D 109 5 5 HELIX 63 63 LYS D 124 CYS D 136 1 13 HELIX 64 64 GLY D 153 GLU D 159 1 7 HELIX 65 65 GLU D 171 LEU D 177 1 7 HELIX 66 66 VAL D 192 VAL D 204 1 13 HELIX 67 67 SER D 210 VAL D 224 1 15 HELIX 68 68 ASN D 244 LEU D 262 1 19 HELIX 69 69 HIS D 283 ASP D 295 1 13 HELIX 70 70 PRO D 299 SER D 317 1 19 HELIX 71 71 THR D 322 ASP D 336 1 15 HELIX 72 72 SER D 338 ALA D 348 1 11 HELIX 73 73 ASP D 353 CYS D 361 1 9 HELIX 74 74 GLU D 367 LEU D 372 1 6 HELIX 75 75 ARG D 393 LEU D 404 1 12 HELIX 76 76 SER D 448 ALA D 458 1 11 SHEET 1 AA 4 VAL A 113 HIS A 116 0 SHEET 2 AA 4 ALA A 229 PHE A 236 1 O ALA A 229 N ASP A 114 SHEET 3 AA 4 VAL A 266 ALA A 272 1 O ALA A 267 N VAL A 232 SHEET 4 AA 4 PHE A 473 VAL A 477 -1 N ALA A 474 O LEU A 270 SHEET 1 AB 2 VAL A 140 SER A 144 0 SHEET 2 AB 2 CYS A 182 GLY A 186 1 O CYS A 183 N MET A 142 SHEET 1 AC 4 CYS A 280 VAL A 281 0 SHEET 2 AC 4 GLY A 420 LEU A 423 -1 O ALA A 421 N VAL A 281 SHEET 3 AC 4 PRO A 436 ARG A 442 -1 O ARG A 439 N GLU A 422 SHEET 4 AC 4 GLU A 377 LEU A 382 -1 O GLU A 377 N ARG A 442 SHEET 1 AD 3 ARG A 430 LEU A 431 0 SHEET 2 AD 3 GLY A 387 VAL A 392 -1 O GLY A 387 N LEU A 431 SHEET 3 AD 3 LEU A 459 SER A 462 -1 O VAL A 460 N GLU A 390 SHEET 1 BA 4 VAL B 113 SER B 117 0 SHEET 2 BA 4 ALA B 229 PHE B 236 1 O ALA B 229 N ASP B 114 SHEET 3 BA 4 VAL B 266 ALA B 272 1 O ALA B 267 N VAL B 232 SHEET 4 BA 4 PHE B 473 VAL B 477 -1 N ALA B 474 O LEU B 270 SHEET 1 BB 2 VAL B 140 ILE B 143 0 SHEET 2 BB 2 CYS B 182 VAL B 185 1 O CYS B 183 N MET B 142 SHEET 1 BC 4 CYS B 280 GLY B 282 0 SHEET 2 BC 4 GLY B 420 LEU B 423 -1 O ALA B 421 N VAL B 281 SHEET 3 BC 4 PRO B 436 ARG B 442 -1 O ARG B 439 N GLU B 422 SHEET 4 BC 4 GLU B 377 LEU B 382 -1 O GLU B 377 N ARG B 442 SHEET 1 BD 3 ARG B 430 LEU B 431 0 SHEET 2 BD 3 GLY B 387 VAL B 392 -1 O GLY B 387 N LEU B 431 SHEET 3 BD 3 LEU B 459 SER B 462 -1 O VAL B 460 N GLU B 390 SHEET 1 CA 4 LYS C 115 SER C 117 0 SHEET 2 CA 4 VAL C 231 PHE C 236 1 O VAL C 231 N HIS C 116 SHEET 3 CA 4 ALA C 269 ALA C 272 1 O ALA C 269 N VAL C 234 SHEET 4 CA 4 PHE C 473 GLU C 475 -1 N ALA C 474 O LEU C 270 SHEET 1 CB 2 VAL C 140 ILE C 143 0 SHEET 2 CB 2 CYS C 182 VAL C 185 1 O CYS C 183 N MET C 142 SHEET 1 CC 4 CYS C 280 GLY C 282 0 SHEET 2 CC 4 GLY C 420 LEU C 423 -1 O ALA C 421 N VAL C 281 SHEET 3 CC 4 LEU C 438 ARG C 442 -1 O ARG C 439 N GLU C 422 SHEET 4 CC 4 GLU C 377 GLU C 379 -1 O GLU C 377 N ARG C 442 SHEET 1 CD 3 ARG C 430 LEU C 431 0 SHEET 2 CD 3 GLY C 387 VAL C 392 -1 O GLY C 387 N LEU C 431 SHEET 3 CD 3 LEU C 459 SER C 462 -1 O VAL C 460 N GLU C 390 SHEET 1 DA 4 VAL D 113 SER D 117 0 SHEET 2 DA 4 ALA D 229 PHE D 236 1 O ALA D 229 N ASP D 114 SHEET 3 DA 4 ALA D 268 ALA D 272 1 O ALA D 269 N VAL D 234 SHEET 4 DA 4 PHE D 473 VAL D 477 -1 N ALA D 474 O LEU D 270 SHEET 1 DB 2 VAL D 140 ILE D 143 0 SHEET 2 DB 2 CYS D 182 VAL D 185 1 O CYS D 183 N MET D 142 SHEET 1 DC 4 CYS D 280 GLY D 282 0 SHEET 2 DC 4 GLY D 420 LEU D 423 -1 O ALA D 421 N VAL D 281 SHEET 3 DC 4 PRO D 436 ARG D 442 -1 O ARG D 439 N GLU D 422 SHEET 4 DC 4 GLU D 377 LEU D 382 -1 O GLU D 377 N ARG D 442 SHEET 1 DD 3 ARG D 430 LEU D 431 0 SHEET 2 DD 3 GLY D 387 VAL D 392 -1 O GLY D 387 N LEU D 431 SHEET 3 DD 3 LEU D 459 SER D 462 -1 O VAL D 460 N GLU D 390 SITE 1 AC1 3 ASP B 304 HOH B2006 HOH B2007 CRYST1 103.532 77.188 100.878 90.00 98.04 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009659 0.000000 0.001364 0.00000 SCALE2 0.000000 0.012955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010011 0.00000