HEADER PROTEIN TRANSPORT 22-JUN-09 2WL8 TITLE X-RAY CRYSTAL STRUCTURE OF PEX19P COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL BIOGENESIS FACTOR 19; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 161-283; COMPND 5 SYNONYM: PEROXIN-19, PEROXISOMAL FARNESYLATED PROTEIN, 33 KDA COMPND 6 HOUSEKEEPING PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PETM-11 KEYWDS PROTEIN TRANSPORT, BIOGENESIS DISORDER, ZELLWEGER SYNDROME, MEMBRANE, KEYWDS 2 PRENYLATION EXPDTA X-RAY DIFFRACTION AUTHOR N.SCHUELLER,S.J.HOLTON,W.A.STANLEY,Y.H.SONG,P.KONAREV,M.ROESSLE, AUTHOR 2 R.ERDMANN,W.SCHLIEBS,M.WILMANNS REVDAT 4 24-JUL-19 2WL8 1 REMARK REVDAT 3 21-SEP-11 2WL8 1 JRNL REVDAT 2 13-JUL-11 2WL8 1 VERSN REVDAT 1 23-JUN-10 2WL8 0 JRNL AUTH N.SCHUELLER,S.J.HOLTON,K.FODOR,M.MILEWSKI,P.KONAREV, JRNL AUTH 2 W.A.STANLEY,J.WOLF,R.ERDMANN,W.SCHLIEBS,Y.H.SONG,M.WILMANNS JRNL TITL THE PEROXISOMAL RECEPTOR PEX19P FORMS A HELICAL MPTS JRNL TITL 2 RECOGNITION DOMAIN. JRNL REF EMBO J. V. 29 2491 2010 JRNL REFN ISSN 0261-4189 JRNL PMID 20531392 JRNL DOI 10.1038/EMBOJ.2010.115 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 45015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2400 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3274 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 183 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3525 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 0.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : -0.14000 REMARK 3 B33 (A**2) : 1.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.144 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.130 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3608 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4881 ; 2.093 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 5.843 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 177 ;42.824 ;26.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 689 ;19.320 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;22.751 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 525 ; 0.175 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2729 ; 0.011 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2185 ; 1.192 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3571 ; 2.207 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1423 ; 4.018 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1310 ; 6.332 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 280 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7913 40.5399 95.0986 REMARK 3 T TENSOR REMARK 3 T11: 0.0258 T22: 0.0088 REMARK 3 T33: 0.0717 T12: -0.0059 REMARK 3 T13: -0.0026 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 3.0418 L22: 2.9783 REMARK 3 L33: 3.3751 L12: -0.2061 REMARK 3 L13: -0.1935 L23: -1.1250 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0329 S13: 0.0098 REMARK 3 S21: 0.1486 S22: 0.0640 S23: 0.0363 REMARK 3 S31: 0.0517 S32: -0.0288 S33: -0.0647 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 171 B 274 REMARK 3 ORIGIN FOR THE GROUP (A): 39.0604 37.9976 90.7355 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.0532 REMARK 3 T33: 0.1346 T12: 0.0086 REMARK 3 T13: 0.0540 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 4.2522 L22: 1.6569 REMARK 3 L33: 1.6556 L12: -1.3180 REMARK 3 L13: 1.9435 L23: -0.6450 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: -0.0061 S13: 0.2161 REMARK 3 S21: 0.0128 S22: -0.0998 S23: -0.2204 REMARK 3 S31: -0.0210 S32: 0.0934 S33: 0.1096 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 171 C 279 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6656 59.1846 81.5319 REMARK 3 T TENSOR REMARK 3 T11: 0.0603 T22: 0.0293 REMARK 3 T33: 0.0552 T12: -0.0072 REMARK 3 T13: -0.0022 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 2.2379 L22: 3.2980 REMARK 3 L33: 1.9644 L12: -0.2446 REMARK 3 L13: -0.3855 L23: -0.0245 REMARK 3 S TENSOR REMARK 3 S11: 0.0839 S12: 0.0759 S13: 0.0959 REMARK 3 S21: -0.3012 S22: -0.1139 S23: -0.0492 REMARK 3 S31: -0.0149 S32: 0.0827 S33: 0.0300 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 171 D 279 REMARK 3 ORIGIN FOR THE GROUP (A): -7.7089 57.4371 99.0081 REMARK 3 T TENSOR REMARK 3 T11: 0.2423 T22: 0.3009 REMARK 3 T33: 0.2599 T12: 0.2149 REMARK 3 T13: 0.0543 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 3.8151 L22: 4.9027 REMARK 3 L33: 6.0510 L12: -1.2647 REMARK 3 L13: 0.8759 L23: -0.7447 REMARK 3 S TENSOR REMARK 3 S11: -0.2966 S12: -0.5168 S13: 0.2680 REMARK 3 S21: 0.7732 S22: 0.2981 S23: 0.3532 REMARK 3 S31: -0.8979 S32: -1.0064 S33: -0.0015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WL8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1290040182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH SX-165 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45015 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 54.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.220 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.18 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.690 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M SODIUM MALONATE, PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.57500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.14350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.56000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.14350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.57500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.56000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 158 REMARK 465 ALA A 159 REMARK 465 MET A 160 REMARK 465 GLY A 161 REMARK 465 MET A 162 REMARK 465 ASP A 163 REMARK 465 GLU A 164 REMARK 465 GLY A 165 REMARK 465 ASP A 166 REMARK 465 GLY A 167 REMARK 465 GLU A 168 REMARK 465 GLY A 169 REMARK 465 ASN A 170 REMARK 465 ASP A 281 REMARK 465 ALA A 282 REMARK 465 LEU A 283 REMARK 465 GLY B 158 REMARK 465 ALA B 159 REMARK 465 MET B 160 REMARK 465 GLY B 161 REMARK 465 MET B 162 REMARK 465 ASP B 163 REMARK 465 GLU B 164 REMARK 465 GLY B 165 REMARK 465 ASP B 166 REMARK 465 GLY B 167 REMARK 465 GLU B 168 REMARK 465 GLY B 169 REMARK 465 ASN B 170 REMARK 465 GLY B 275 REMARK 465 LEU B 276 REMARK 465 ASN B 277 REMARK 465 PHE B 278 REMARK 465 ASP B 279 REMARK 465 LEU B 280 REMARK 465 ASP B 281 REMARK 465 ALA B 282 REMARK 465 LEU B 283 REMARK 465 GLY C 158 REMARK 465 ALA C 159 REMARK 465 MET C 160 REMARK 465 GLY C 161 REMARK 465 MET C 162 REMARK 465 ASP C 163 REMARK 465 GLU C 164 REMARK 465 GLY C 165 REMARK 465 ASP C 166 REMARK 465 GLY C 167 REMARK 465 GLU C 168 REMARK 465 GLY C 169 REMARK 465 ASN C 170 REMARK 465 LEU C 280 REMARK 465 ASP C 281 REMARK 465 ALA C 282 REMARK 465 LEU C 283 REMARK 465 GLY D 158 REMARK 465 ALA D 159 REMARK 465 MET D 160 REMARK 465 GLY D 161 REMARK 465 MET D 162 REMARK 465 ASP D 163 REMARK 465 GLU D 164 REMARK 465 GLY D 165 REMARK 465 ASP D 166 REMARK 465 GLY D 167 REMARK 465 GLU D 168 REMARK 465 GLY D 169 REMARK 465 ASN D 170 REMARK 465 LEU D 280 REMARK 465 ASP D 281 REMARK 465 ALA D 282 REMARK 465 LEU D 283 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET B 250 CE MET C 250 3646 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 173 CD PRO B 173 N 0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 247 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG C 247 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 279 70.12 -114.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W85 RELATED DB: PDB REMARK 900 STRUCTURE OF PEX14 IN COMPEX WITH PEX19 DBREF 2WL8 A 161 283 UNP P40855 PEX19_HUMAN 161 283 DBREF 2WL8 B 161 283 UNP P40855 PEX19_HUMAN 161 283 DBREF 2WL8 C 161 283 UNP P40855 PEX19_HUMAN 161 283 DBREF 2WL8 D 161 283 UNP P40855 PEX19_HUMAN 161 283 SEQADV 2WL8 GLY A 158 UNP P40855 EXPRESSION TAG SEQADV 2WL8 ALA A 159 UNP P40855 EXPRESSION TAG SEQADV 2WL8 MET A 160 UNP P40855 EXPRESSION TAG SEQADV 2WL8 GLY B 158 UNP P40855 EXPRESSION TAG SEQADV 2WL8 ALA B 159 UNP P40855 EXPRESSION TAG SEQADV 2WL8 MET B 160 UNP P40855 EXPRESSION TAG SEQADV 2WL8 GLY C 158 UNP P40855 EXPRESSION TAG SEQADV 2WL8 ALA C 159 UNP P40855 EXPRESSION TAG SEQADV 2WL8 MET C 160 UNP P40855 EXPRESSION TAG SEQADV 2WL8 GLY D 158 UNP P40855 EXPRESSION TAG SEQADV 2WL8 ALA D 159 UNP P40855 EXPRESSION TAG SEQADV 2WL8 MET D 160 UNP P40855 EXPRESSION TAG SEQRES 1 A 126 GLY ALA MET GLY MET ASP GLU GLY ASP GLY GLU GLY ASN SEQRES 2 A 126 ILE LEU PRO ILE MET GLN SER ILE MET GLN ASN LEU LEU SEQRES 3 A 126 SER LYS ASP VAL LEU TYR PRO SER LEU LYS GLU ILE THR SEQRES 4 A 126 GLU LYS TYR PRO GLU TRP LEU GLN SER HIS ARG GLU SER SEQRES 5 A 126 LEU PRO PRO GLU GLN PHE GLU LYS TYR GLN GLU GLN HIS SEQRES 6 A 126 SER VAL MET CYS LYS ILE CYS GLU GLN PHE GLU ALA GLU SEQRES 7 A 126 THR PRO THR ASP SER GLU THR THR GLN LYS ALA ARG PHE SEQRES 8 A 126 GLU MET VAL LEU ASP LEU MET GLN GLN LEU GLN ASP LEU SEQRES 9 A 126 GLY HIS PRO PRO LYS GLU LEU ALA GLY GLU MET PRO PRO SEQRES 10 A 126 GLY LEU ASN PHE ASP LEU ASP ALA LEU SEQRES 1 B 126 GLY ALA MET GLY MET ASP GLU GLY ASP GLY GLU GLY ASN SEQRES 2 B 126 ILE LEU PRO ILE MET GLN SER ILE MET GLN ASN LEU LEU SEQRES 3 B 126 SER LYS ASP VAL LEU TYR PRO SER LEU LYS GLU ILE THR SEQRES 4 B 126 GLU LYS TYR PRO GLU TRP LEU GLN SER HIS ARG GLU SER SEQRES 5 B 126 LEU PRO PRO GLU GLN PHE GLU LYS TYR GLN GLU GLN HIS SEQRES 6 B 126 SER VAL MET CYS LYS ILE CYS GLU GLN PHE GLU ALA GLU SEQRES 7 B 126 THR PRO THR ASP SER GLU THR THR GLN LYS ALA ARG PHE SEQRES 8 B 126 GLU MET VAL LEU ASP LEU MET GLN GLN LEU GLN ASP LEU SEQRES 9 B 126 GLY HIS PRO PRO LYS GLU LEU ALA GLY GLU MET PRO PRO SEQRES 10 B 126 GLY LEU ASN PHE ASP LEU ASP ALA LEU SEQRES 1 C 126 GLY ALA MET GLY MET ASP GLU GLY ASP GLY GLU GLY ASN SEQRES 2 C 126 ILE LEU PRO ILE MET GLN SER ILE MET GLN ASN LEU LEU SEQRES 3 C 126 SER LYS ASP VAL LEU TYR PRO SER LEU LYS GLU ILE THR SEQRES 4 C 126 GLU LYS TYR PRO GLU TRP LEU GLN SER HIS ARG GLU SER SEQRES 5 C 126 LEU PRO PRO GLU GLN PHE GLU LYS TYR GLN GLU GLN HIS SEQRES 6 C 126 SER VAL MET CYS LYS ILE CYS GLU GLN PHE GLU ALA GLU SEQRES 7 C 126 THR PRO THR ASP SER GLU THR THR GLN LYS ALA ARG PHE SEQRES 8 C 126 GLU MET VAL LEU ASP LEU MET GLN GLN LEU GLN ASP LEU SEQRES 9 C 126 GLY HIS PRO PRO LYS GLU LEU ALA GLY GLU MET PRO PRO SEQRES 10 C 126 GLY LEU ASN PHE ASP LEU ASP ALA LEU SEQRES 1 D 126 GLY ALA MET GLY MET ASP GLU GLY ASP GLY GLU GLY ASN SEQRES 2 D 126 ILE LEU PRO ILE MET GLN SER ILE MET GLN ASN LEU LEU SEQRES 3 D 126 SER LYS ASP VAL LEU TYR PRO SER LEU LYS GLU ILE THR SEQRES 4 D 126 GLU LYS TYR PRO GLU TRP LEU GLN SER HIS ARG GLU SER SEQRES 5 D 126 LEU PRO PRO GLU GLN PHE GLU LYS TYR GLN GLU GLN HIS SEQRES 6 D 126 SER VAL MET CYS LYS ILE CYS GLU GLN PHE GLU ALA GLU SEQRES 7 D 126 THR PRO THR ASP SER GLU THR THR GLN LYS ALA ARG PHE SEQRES 8 D 126 GLU MET VAL LEU ASP LEU MET GLN GLN LEU GLN ASP LEU SEQRES 9 D 126 GLY HIS PRO PRO LYS GLU LEU ALA GLY GLU MET PRO PRO SEQRES 10 D 126 GLY LEU ASN PHE ASP LEU ASP ALA LEU FORMUL 5 HOH *190(H2 O) HELIX 1 1 ILE A 171 LEU A 183 1 13 HELIX 2 2 SER A 184 GLU A 197 1 14 HELIX 3 3 LYS A 198 ARG A 207 1 10 HELIX 4 4 GLU A 208 LEU A 210 5 3 HELIX 5 5 PRO A 211 GLU A 235 1 25 HELIX 6 6 SER A 240 LEU A 261 1 22 HELIX 7 7 PRO A 265 ALA A 269 5 5 HELIX 8 8 PRO B 173 LEU B 183 1 11 HELIX 9 9 SER B 184 ARG B 207 1 24 HELIX 10 10 PRO B 211 GLU B 235 1 25 HELIX 11 11 SER B 240 LEU B 261 1 22 HELIX 12 12 LEU B 268 MET B 272 5 5 HELIX 13 13 PRO C 173 LEU C 183 1 11 HELIX 14 14 SER C 184 ARG C 207 1 24 HELIX 15 15 GLU C 208 LEU C 210 5 3 HELIX 16 16 PRO C 211 GLU C 235 1 25 HELIX 17 17 SER C 240 LEU C 261 1 22 HELIX 18 18 PRO C 265 ALA C 269 5 5 HELIX 19 19 ILE D 171 LEU D 183 1 13 HELIX 20 20 SER D 184 ARG D 207 1 24 HELIX 21 21 PRO D 211 ALA D 234 1 24 HELIX 22 22 SER D 240 LEU D 261 1 22 HELIX 23 23 PRO D 265 ALA D 269 5 5 CRYST1 67.150 91.120 122.287 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014892 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008177 0.00000