HEADER OXIDOREDUCTASE 30-JUN-09 2WMD TITLE CRYSTAL STRUCTURE OF NMRA-LIKE FAMILY DOMAIN CONTAINING PROTEIN 1 IN TITLE 2 COMPLEX WITH NADP AND 2-(4-CHLORO-PHENYLAMINO)-NICOTINIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: NMRA-LIKE FAMILY DOMAIN CONTAINING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-298; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-R3-PRARE2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PNIC28-BSA4 KEYWDS DISULFIDE BOND, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.BHATIA,E.PILKA,F.NIESEN,W.W.YUE,E.UGOCHUKWU,P.SAVITSKY,V.HOZJAN, AUTHOR 2 A.K.ROOS,P.FILIPPAKOPOULOS,F.VON DELFT,T.HEIGHTMAN,C.ARROWSMITH, AUTHOR 3 J.WEIGELT,A.EDWARDS,C.BOUNTRA,U.OPPERMANN REVDAT 5 08-MAY-24 2WMD 1 REMARK REVDAT 4 24-JAN-18 2WMD 1 JRNL REVDAT 3 05-DEC-12 2WMD 1 JRNL REVDAT 2 13-JUL-11 2WMD 1 VERSN REVDAT 1 28-JUL-09 2WMD 0 JRNL AUTH C.BHATIA,W.W.YUE,E.PILKA,E.UGOCHUKWU,P.SAVITSKY,V.HOZJAN, JRNL AUTH 2 A.K.ROOS,P.FILIPPAKOPOULOS,F.VON DELFT,T.HEIGHTMAN, JRNL AUTH 3 C.ARROWSMITH,J.WEIGELT,A.EDWARDS,C.BOUNTRA,U.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF NMRA-LIKE FAMILY DOMAIN CONTAINING JRNL TITL 2 PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 26250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1391 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1929 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2282 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 252 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.61000 REMARK 3 B22 (A**2) : 0.57000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.159 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.644 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2406 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1600 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3272 ; 1.683 ; 2.011 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3868 ; 0.944 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 296 ; 6.282 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;31.166 ;24.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 395 ;14.085 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;15.971 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 367 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2673 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 469 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1469 ; 0.836 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 603 ; 0.241 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2353 ; 1.411 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 937 ; 2.578 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 919 ; 3.808 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): -27.1140 17.6258 -1.1846 REMARK 3 T TENSOR REMARK 3 T11: 0.1684 T22: 0.0665 REMARK 3 T33: 0.1162 T12: -0.0680 REMARK 3 T13: -0.0225 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 1.6722 L22: 2.0541 REMARK 3 L33: 4.1363 L12: -0.3698 REMARK 3 L13: -0.4296 L23: 1.9314 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: -0.0181 S13: 0.2350 REMARK 3 S21: -0.4048 S22: 0.0046 S23: -0.0210 REMARK 3 S31: -0.7482 S32: 0.2270 S33: 0.0094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WMD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1290040304. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9764 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27651 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 86.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% TACSIMATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.86700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.18100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.86700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.18100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ASP A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CD CE NZ REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 167 CE NZ REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 LYS A 206 CD CE NZ REMARK 470 LYS A 234 CD CE NZ REMARK 470 LYS A 248 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2073 O HOH A 2074 1.93 REMARK 500 ND1 HIS A 237 O HOH A 2202 2.01 REMARK 500 NE2 HIS A 237 O HOH A 2200 2.05 REMARK 500 OE1 GLU A 223 O HOH A 2192 2.11 REMARK 500 O CYS A 85 O HOH A 2098 2.14 REMARK 500 OE1 GLU A 135 O HOH A 2138 2.15 REMARK 500 O HOH A 2200 O HOH A 2201 2.16 REMARK 500 O HOH A 2228 O HOH A 2230 2.17 REMARK 500 OE1 GLU A 138 O HOH A 2141 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 70 132.18 -39.86 REMARK 500 SER A 161 -80.65 -139.43 REMARK 500 MET A 203 67.28 -158.47 REMARK 500 SER A 215 149.52 -175.15 REMARK 500 ARG A 267 65.95 64.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZZ0 A 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 1300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WM3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF NMRA-LIKE FAMILY DOMAIN CONTAINING PROTEIN 1 REMARK 900 IN COMPLEX WITH NIFLUMIC ACID REMARK 900 RELATED ID: 2EXX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HSCARG FROM HOMO SAPIENS IN COMPLEXWITH NADP DBREF 2WMD A 0 0 PDB 2WMD 2WMD 0 0 DBREF 2WMD A 1 298 UNP Q9HBL8 NMRL1_HUMAN 1 298 SEQRES 1 A 299 SER MET VAL ASP LYS LYS LEU VAL VAL VAL PHE GLY GLY SEQRES 2 A 299 THR GLY ALA GLN GLY GLY SER VAL ALA ARG THR LEU LEU SEQRES 3 A 299 GLU ASP GLY THR PHE LYS VAL ARG VAL VAL THR ARG ASN SEQRES 4 A 299 PRO ARG LYS LYS ALA ALA LYS GLU LEU ARG LEU GLN GLY SEQRES 5 A 299 ALA GLU VAL VAL GLN GLY ASP GLN ASP ASP GLN VAL ILE SEQRES 6 A 299 MET GLU LEU ALA LEU ASN GLY ALA TYR ALA THR PHE ILE SEQRES 7 A 299 VAL THR ASN TYR TRP GLU SER CYS SER GLN GLU GLN GLU SEQRES 8 A 299 VAL LYS GLN GLY LYS LEU LEU ALA ASP LEU ALA ARG ARG SEQRES 9 A 299 LEU GLY LEU HIS TYR VAL VAL TYR SER GLY LEU GLU ASN SEQRES 10 A 299 ILE LYS LYS LEU THR ALA GLY ARG LEU ALA ALA ALA HIS SEQRES 11 A 299 PHE ASP GLY LYS GLY GLU VAL GLU GLU TYR PHE ARG ASP SEQRES 12 A 299 ILE GLY VAL PRO MET THR SER VAL ARG LEU PRO CYS TYR SEQRES 13 A 299 PHE GLU ASN LEU LEU SER HIS PHE LEU PRO GLN LYS ALA SEQRES 14 A 299 PRO ASP GLY LYS SER TYR LEU LEU SER LEU PRO THR GLY SEQRES 15 A 299 ASP VAL PRO MET ASP GLY MET SER VAL SER ASP LEU GLY SEQRES 16 A 299 PRO VAL VAL LEU SER LEU LEU LYS MET PRO GLU LYS TYR SEQRES 17 A 299 VAL GLY GLN ASN ILE GLY LEU SER THR CYS ARG HIS THR SEQRES 18 A 299 ALA GLU GLU TYR ALA ALA LEU LEU THR LYS HIS THR ARG SEQRES 19 A 299 LYS VAL VAL HIS ASP ALA LYS MET THR PRO GLU ASP TYR SEQRES 20 A 299 GLU LYS LEU GLY PHE PRO GLY ALA ARG ASP LEU ALA ASN SEQRES 21 A 299 MET PHE ARG PHE TYR ALA LEU ARG PRO ASP ARG ASP ILE SEQRES 22 A 299 GLU LEU THR LEU ARG LEU ASN PRO LYS ALA LEU THR LEU SEQRES 23 A 299 ASP GLN TRP LEU GLU GLN HIS LYS GLY ASP PHE ASN LEU HET ZZ0 A1299 17 HET NAP A1300 48 HETNAM ZZ0 2-(4-CHLORO-PHENYLAMINO)-NICOTINIC ACID HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN ZZ0 2-[(4-CHLOROPHENYL)AMINO]PYRIDINE-3-CARBOXYLIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 ZZ0 C12 H9 CL N2 O2 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 HOH *252(H2 O) HELIX 1 1 GLY A 14 GLY A 28 1 15 HELIX 2 2 LYS A 41 GLN A 50 1 10 HELIX 3 3 ASP A 61 ASN A 70 1 10 HELIX 4 4 ASN A 80 CYS A 85 1 6 HELIX 5 5 SER A 86 LEU A 104 1 19 HELIX 6 6 ASN A 116 THR A 121 1 6 HELIX 7 7 ALA A 127 ILE A 143 1 17 HELIX 8 8 GLU A 157 SER A 161 5 5 HELIX 9 9 SER A 189 SER A 191 5 3 HELIX 10 10 ASP A 192 LYS A 202 1 11 HELIX 11 11 MET A 203 TYR A 207 5 5 HELIX 12 12 THR A 220 ARG A 233 1 14 HELIX 13 13 THR A 242 LEU A 249 1 8 HELIX 14 14 GLY A 253 ALA A 265 1 13 HELIX 15 15 ASP A 271 ASN A 279 1 9 HELIX 16 16 THR A 284 LYS A 293 1 10 HELIX 17 17 GLY A 294 PHE A 296 5 3 SHEET 1 AA 7 GLU A 53 GLN A 56 0 SHEET 2 AA 7 LYS A 31 THR A 36 1 O VAL A 32 N GLU A 53 SHEET 3 AA 7 LEU A 6 PHE A 10 1 O VAL A 7 N ARG A 33 SHEET 4 AA 7 ALA A 74 ILE A 77 1 O ALA A 74 N VAL A 8 SHEET 5 AA 7 TYR A 108 TYR A 111 1 O TYR A 108 N THR A 75 SHEET 6 AA 7 MET A 147 ARG A 151 1 O THR A 148 N TYR A 111 SHEET 7 AA 7 ASN A 211 GLY A 213 1 O ILE A 212 N ARG A 151 SHEET 1 AB 3 CYS A 154 TYR A 155 0 SHEET 2 AB 3 MET A 185 MET A 188 1 O ASP A 186 N CYS A 154 SHEET 3 AB 3 CYS A 217 HIS A 219 -1 O CYS A 217 N GLY A 187 SHEET 1 AC 3 GLN A 166 LYS A 167 0 SHEET 2 AC 3 TYR A 174 LEU A 176 -1 O LEU A 175 N GLN A 166 SHEET 3 AC 3 VAL A 236 ASP A 238 1 O HIS A 237 N LEU A 176 SITE 1 AC1 10 TRP A 82 HIS A 129 ASN A 158 HIS A 162 SITE 2 AC1 10 TYR A 246 PHE A 251 LEU A 257 MET A 260 SITE 3 AC1 10 TYR A 264 NAP A1300 SITE 1 AC2 33 GLY A 11 THR A 13 GLY A 14 ALA A 15 SITE 2 AC2 33 GLN A 16 THR A 36 ARG A 37 LYS A 41 SITE 3 AC2 33 GLY A 57 ASP A 58 GLN A 59 THR A 79 SITE 4 AC2 33 ASN A 80 TYR A 81 GLU A 90 GLN A 93 SITE 5 AC2 33 LYS A 133 LEU A 152 PRO A 153 CYS A 154 SITE 6 AC2 33 TYR A 155 ASN A 158 ZZ0 A1299 HOH A2003 SITE 7 AC2 33 HOH A2034 HOH A2245 HOH A2246 HOH A2247 SITE 8 AC2 33 HOH A2248 HOH A2249 HOH A2250 HOH A2251 SITE 9 AC2 33 HOH A2252 CRYST1 57.722 79.734 86.362 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017324 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011579 0.00000