HEADER CELL ADHESION 13-JUL-09 2WNO TITLE X-RAY STRUCTURE OF CUB_C DOMAIN FROM TSG-6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUMOR NECROSIS FACTOR-INDUCIBLE GENE 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CUB_C, RESIDUES 129-277; COMPND 5 SYNONYM: TUMOR NECROSIS FACTOR-INDUCIBLE PROTEIN TSG-6, TNF- COMPND 6 STIMULATED GENE 6 PROTEIN, TSG-6, TUMOR NECROSIS FACTOR ALPHA-INDUCED COMPND 7 PROTEIN 6, TNF ALPHA-INDUCED PROTEIN 6, HYALURONATE-BINDING PROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA GAMI-B; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRK172 KEYWDS GLYCOPROTEIN, CELL ADHESION, EXTRACELLULAR MATRIX EXPDTA X-RAY DIFFRACTION AUTHOR D.C.BRIGGS,A.J.DAY REVDAT 6 13-DEC-23 2WNO 1 REMARK LINK REVDAT 5 28-JUN-17 2WNO 1 REMARK REVDAT 4 09-DEC-15 2WNO 1 JRNL REVDAT 3 28-OCT-15 2WNO 1 JRNL REVDAT 2 21-OCT-15 2WNO 1 HEADER JRNL REMARK VERSN REVDAT 1 01-SEP-10 2WNO 0 JRNL AUTH D.C.BRIGGS,H.L.BIRCHENOUGH,T.ALI,M.S.RUGG,J.P.WALTHO, JRNL AUTH 2 E.IEVOLI,T.A.JOWITT,J.J.ENGHILD,R.P.RICHTER,A.SALUSTRI, JRNL AUTH 3 C.M.MILNER,A.J.DAY JRNL TITL METAL ION-DEPENDENT HEAVY CHAIN TRANSFER ACTIVITY OF TSG-6 JRNL TITL 2 MEDIATES ASSEMBLY OF THE CUMULUS-OOCYTE MATRIX. JRNL REF J.BIOL.CHEM. V. 290 28708 2015 JRNL REFN ISSN 0021-9258 JRNL PMID 26468290 JRNL DOI 10.1074/JBC.M115.669838 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 8221 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 395 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 512 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.3490 REMARK 3 BIN FREE R VALUE SET COUNT : 26 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 943 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 104 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : 0.67000 REMARK 3 B33 (A**2) : -1.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.231 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.192 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.808 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 980 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1332 ; 1.113 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 120 ; 6.547 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;34.300 ;24.615 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 150 ;14.594 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;24.369 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 136 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 780 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 434 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 652 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 82 ; 0.136 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.134 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.136 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.096 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 601 ; 0.292 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 953 ; 0.517 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 427 ; 0.772 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 378 ; 1.296 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 131 A 143 REMARK 3 ORIGIN FOR THE GROUP (A): 9.3720 -0.9280 -27.7080 REMARK 3 T TENSOR REMARK 3 T11: 0.3069 T22: 0.2263 REMARK 3 T33: 0.2005 T12: 0.0069 REMARK 3 T13: 0.0036 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 6.5226 L22: 13.6721 REMARK 3 L33: 1.9114 L12: 6.6222 REMARK 3 L13: -1.1451 L23: -4.6101 REMARK 3 S TENSOR REMARK 3 S11: 0.1995 S12: 0.3984 S13: 0.9267 REMARK 3 S21: 0.4784 S22: 0.2808 S23: 1.2703 REMARK 3 S31: -0.4273 S32: -0.5485 S33: -0.4803 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 144 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4670 -5.6230 -17.6880 REMARK 3 T TENSOR REMARK 3 T11: 0.2320 T22: 0.1416 REMARK 3 T33: 0.1941 T12: 0.0310 REMARK 3 T13: 0.0352 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 4.1401 L22: 1.4885 REMARK 3 L33: 1.7745 L12: 1.5237 REMARK 3 L13: -0.5160 L23: -1.4495 REMARK 3 S TENSOR REMARK 3 S11: 0.0541 S12: 0.1292 S13: 0.2728 REMARK 3 S21: -0.0092 S22: 0.2730 S23: 0.6218 REMARK 3 S31: -0.2239 S32: -0.3860 S33: -0.3270 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 19.4210 -5.2980 -20.5580 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.1619 REMARK 3 T33: 0.1840 T12: -0.0185 REMARK 3 T13: -0.0415 T23: -0.0545 REMARK 3 L TENSOR REMARK 3 L11: 1.8084 L22: 3.2585 REMARK 3 L33: 1.4620 L12: 0.5576 REMARK 3 L13: -0.3158 L23: -0.0270 REMARK 3 S TENSOR REMARK 3 S11: -0.0818 S12: 0.0004 S13: -0.0287 REMARK 3 S21: 0.1728 S22: 0.1047 S23: -0.3729 REMARK 3 S31: -0.0224 S32: 0.2048 S33: -0.0229 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 22.2900 -10.6300 -21.6410 REMARK 3 T TENSOR REMARK 3 T11: 0.2372 T22: 0.1753 REMARK 3 T33: 0.2979 T12: 0.0291 REMARK 3 T13: -0.0557 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 5.2260 L22: 4.1774 REMARK 3 L33: 0.4222 L12: -1.4944 REMARK 3 L13: -1.3540 L23: -0.1302 REMARK 3 S TENSOR REMARK 3 S11: 0.2463 S12: -0.0504 S13: -0.0762 REMARK 3 S21: 0.3238 S22: 0.1411 S23: -0.1268 REMARK 3 S31: 0.4853 S32: 0.5061 S33: -0.3874 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 213 A 224 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2090 -1.0920 -20.3060 REMARK 3 T TENSOR REMARK 3 T11: 0.2222 T22: 0.1374 REMARK 3 T33: 0.2138 T12: 0.0020 REMARK 3 T13: -0.0354 T23: -0.0656 REMARK 3 L TENSOR REMARK 3 L11: 6.9100 L22: 4.3991 REMARK 3 L33: 4.5627 L12: 1.0201 REMARK 3 L13: -0.5789 L23: 1.4150 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: -0.3584 S13: -0.0707 REMARK 3 S21: 0.3405 S22: 0.1367 S23: -0.6193 REMARK 3 S31: -0.1229 S32: 1.1183 S33: -0.0965 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 225 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7860 -4.5570 -19.0580 REMARK 3 T TENSOR REMARK 3 T11: 0.2305 T22: 0.1529 REMARK 3 T33: 0.2298 T12: 0.0189 REMARK 3 T13: 0.0282 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 0.1548 L22: 3.4833 REMARK 3 L33: 2.7529 L12: 0.0198 REMARK 3 L13: 0.6477 L23: -0.3052 REMARK 3 S TENSOR REMARK 3 S11: -0.0338 S12: -0.1996 S13: -0.1195 REMARK 3 S21: 0.0471 S22: 0.0410 S23: -0.1962 REMARK 3 S31: -0.1075 S32: 0.2672 S33: -0.0072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 250-277 (_C TAIL) WERE NOT VISIBLE IN THE REMARK 3 ELECTRON DENSITY. HOWEVER, SDS-PAGE ON A DISSOLVED CRYSTAL REMARK 3 INDICATES THAT THE PROTEIN WAS INTACT, AND THEREFORE WE ASSUME REMARK 3 THE MISSING RESIDUES ARE HIGHLY DISORDERED OR MOBILE AND THUS REMARK 3 NOT VISIBLE IN ELECTRON DENSITY. THERE IS A 0.25 OCCUPANCY REMARK 3 COBALT ION MODELLED ADJACENT TO HIS203. THE CRYSTAL USED FOR REMARK 3 REFINEMENT WAS SOAK IN A MOTHER LIQUOR SUPPLEMENTED WITH 10MM REMARK 3 COBALT TO TRY AND LOCATE POSSIBLE COBALT BINDING SITES. WHILST REMARK 3 THIS SITE IS VISIBLE (CONFIRMED WITH AN ANOMALOUS DIFFERENCE REMARK 3 FOURIER), WE DO NOT BELIEVE THAT THIS SITE IS BIOLOGICALLY REMARK 3 RELEVANT. SEE PUBLICATION FOR DETAILS. REMARK 4 REMARK 4 2WNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1290040307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU R-AXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8616 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: HOMOLOGY MODEL OF TARGETS BASED UPON 1SZB REMARK 200 REMARK 200 REMARK: MODEL CREATED USING PHYRE SERVER. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH 7.5 200MM MGSO4 22% REMARK 280 (W/V) PEG 1000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.28600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.46450 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.46450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.42900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.46450 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.46450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.14300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.46450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.46450 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.42900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.46450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.46450 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.14300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.28600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 129 REMARK 465 PRO A 130 REMARK 465 VAL A 250 REMARK 465 SER A 251 REMARK 465 LYS A 252 REMARK 465 SER A 253 REMARK 465 SER A 254 REMARK 465 GLN A 255 REMARK 465 GLY A 256 REMARK 465 LYS A 257 REMARK 465 ASN A 258 REMARK 465 THR A 259 REMARK 465 SER A 260 REMARK 465 THR A 261 REMARK 465 THR A 262 REMARK 465 SER A 263 REMARK 465 THR A 264 REMARK 465 GLY A 265 REMARK 465 ASN A 266 REMARK 465 LYS A 267 REMARK 465 ASN A 268 REMARK 465 PHE A 269 REMARK 465 LEU A 270 REMARK 465 ALA A 271 REMARK 465 GLY A 272 REMARK 465 ARG A 273 REMARK 465 PHE A 274 REMARK 465 SER A 275 REMARK 465 HIS A 276 REMARK 465 LEU A 277 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 131 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 168 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 132 -96.23 -177.45 REMARK 500 ALA A 190 -76.01 -89.93 REMARK 500 ASP A 201 33.27 -98.99 REMARK 500 ASP A 232 -158.94 -86.07 REMARK 500 VAL A 235 116.59 69.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1251 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 183 OE1 REMARK 620 2 ASP A 191 OD2 90.3 REMARK 620 3 ASP A 191 OD1 88.1 51.3 REMARK 620 4 ASP A 232 OD2 93.3 74.3 125.6 REMARK 620 5 SER A 234 O 88.6 152.0 156.5 77.8 REMARK 620 6 VAL A 235 O 95.0 133.6 82.8 150.7 74.3 REMARK 620 7 HOH A2028 O 166.1 103.5 99.0 92.2 80.1 74.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A1250 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 203 NE2 REMARK 620 2 HOH A2102 O 87.6 REMARK 620 3 HOH A2103 O 159.9 110.5 REMARK 620 4 HOH A2104 O 100.8 81.8 90.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 1250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1251 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1O7C RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE HUMAN TSG-6 LINK MODULE IN THE PRESENCE REMARK 900 OF A HYALURONAN OCTASACCHARIDE (I.E. BOUND CONFORMATION) REMARK 900 RELATED ID: 1O7B RELATED DB: PDB REMARK 900 REFINED SOLUTION STRUCTURE OF THE HUMAN TSG -6 LINK MODULE REMARK 900 RELATED ID: 2PF5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN TSG-6 LINK MODULE DBREF 2WNO A 129 277 UNP P98066 TSG6_HUMAN 129 277 SEQRES 1 A 149 ASN PRO HIS ALA LYS GLU CYS GLY GLY VAL PHE THR ASP SEQRES 2 A 149 PRO LYS GLN ILE PHE LYS SER PRO GLY PHE PRO ASN GLU SEQRES 3 A 149 TYR GLU ASP ASN GLN ILE CYS TYR TRP HIS ILE ARG LEU SEQRES 4 A 149 LYS TYR GLY GLN ARG ILE HIS LEU SER PHE LEU ASP PHE SEQRES 5 A 149 ASP LEU GLU ASP ASP PRO GLY CYS LEU ALA ASP TYR VAL SEQRES 6 A 149 GLU ILE TYR ASP SER TYR ASP ASP VAL HIS GLY PHE VAL SEQRES 7 A 149 GLY ARG TYR CYS GLY ASP GLU LEU PRO ASP ASP ILE ILE SEQRES 8 A 149 SER THR GLY ASN VAL MET THR LEU LYS PHE LEU SER ASP SEQRES 9 A 149 ALA SER VAL THR ALA GLY GLY PHE GLN ILE LYS TYR VAL SEQRES 10 A 149 ALA MET ASP PRO VAL SER LYS SER SER GLN GLY LYS ASN SEQRES 11 A 149 THR SER THR THR SER THR GLY ASN LYS ASN PHE LEU ALA SEQRES 12 A 149 GLY ARG PHE SER HIS LEU HET CO A1250 1 HET CA A1251 1 HETNAM CO COBALT (II) ION HETNAM CA CALCIUM ION FORMUL 2 CO CO 2+ FORMUL 3 CA CA 2+ FORMUL 4 HOH *104(H2 O) SHEET 1 AA 4 LYS A 143 LYS A 147 0 SHEET 2 AA 4 GLN A 241 MET A 247 -1 O ILE A 242 N PHE A 146 SHEET 3 AA 4 ARG A 172 ASP A 179 -1 O ARG A 172 N MET A 247 SHEET 4 AA 4 ILE A 218 ILE A 219 -1 O ILE A 218 N LEU A 175 SHEET 1 AB 3 ILE A 160 ARG A 166 0 SHEET 2 AB 3 VAL A 224 LEU A 230 -1 O MET A 225 N ILE A 165 SHEET 3 AB 3 TYR A 192 TYR A 196 -1 O TYR A 192 N LEU A 230 SSBOND 1 CYS A 135 CYS A 161 1555 1555 2.03 SSBOND 2 CYS A 188 CYS A 210 1555 1555 2.02 LINK OE1 GLU A 183 CA CA A1251 1555 1555 2.30 LINK OD2 ASP A 191 CA CA A1251 1555 1555 2.49 LINK OD1 ASP A 191 CA CA A1251 1555 1555 2.56 LINK NE2 HIS A 203 CO CO A1250 1555 1555 2.67 LINK OD2 ASP A 232 CA CA A1251 1555 1555 2.33 LINK O SER A 234 CA CA A1251 1555 1555 2.30 LINK O VAL A 235 CA CA A1251 1555 1555 2.33 LINK CO CO A1250 O HOH A2102 1555 1555 2.73 LINK CO CO A1250 O HOH A2103 1555 1555 2.51 LINK CO CO A1250 O HOH A2104 1555 1555 2.49 LINK CA CA A1251 O HOH A2028 1555 1555 2.21 CISPEP 1 HIS A 131 ALA A 132 0 -10.26 CISPEP 2 PHE A 151 PRO A 152 0 9.60 SITE 1 AC1 4 HIS A 203 HOH A2102 HOH A2103 HOH A2104 SITE 1 AC2 6 GLU A 183 ASP A 191 ASP A 232 SER A 234 SITE 2 AC2 6 VAL A 235 HOH A2028 CRYST1 56.929 56.929 112.572 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017566 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008883 0.00000