HEADER LYASE/ANTIBIOTIC 27-JUL-09 2WOQ TITLE PORPHOBILINOGEN SYNTHASE (HEMB) IN COMPLEX WITH 5-ACETAMIDO-4- TITLE 2 OXOHEXANOIC ACID (ALAREMYCIN 2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DELTA-AMINOLEVULINIC ACID DEHYDRATASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PORPHOBILINOGEN SYNTHASE, ALADH, ALAD; COMPND 5 EC: 4.2.1.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 PLUS KEYWDS LYASE-ANTIBIOTIC COMPLEX, LYASE ANTIBIOTIC COMPLEX, METAL-BINDING, KEYWDS 2 HEME BIOSYNTHESIS, PORPHYRIN BIOSYNTHESIS, PORPOBILINOGEN SYNTHASE, KEYWDS 3 HEMB, LYASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR I.U.HEINEMANN,C.SCHULZ,W.-D.SCHUBERT,D.W.HEINZ,Y.-G.WANG,Y.KOBAYASHI, AUTHOR 2 Y.AWA,M.WACHI,D.JAHN,M.JAHN REVDAT 7 16-OCT-24 2WOQ 1 REMARK REVDAT 6 20-DEC-23 2WOQ 1 REMARK HETSYN LINK REVDAT 5 27-FEB-19 2WOQ 1 JRNL REMARK LINK REVDAT 4 13-JUL-11 2WOQ 1 VERSN REVDAT 3 29-DEC-09 2WOQ 1 KEYWDS JRNL REVDAT 2 03-NOV-09 2WOQ 1 HEADER REVDAT 1 27-OCT-09 2WOQ 0 JRNL AUTH I.U.HEINEMANN,C.SCHULZ,W.D.SCHUBERT,D.W.HEINZ,Y.G.WANG, JRNL AUTH 2 Y.KOBAYASHI,Y.AWA,M.WACHI,D.JAHN,M.JAHN JRNL TITL STRUCTURE OF THE HEME BIOSYNTHETIC PSEUDOMONAS AERUGINOSA JRNL TITL 2 PORPHOBILINOGEN SYNTHASE IN COMPLEX WITH THE ANTIBIOTIC JRNL TITL 3 ALAREMYCIN. JRNL REF ANTIMICROB. AGENTS V. 54 267 2010 JRNL REF 2 CHEMOTHER. JRNL REFN ESSN 1098-6596 JRNL PMID 19822707 JRNL DOI 10.1128/AAC.00553-09 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1488 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2006 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2531 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.847 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2848 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3867 ; 1.574 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 4.174 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;32.366 ;23.285 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;11.798 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;19.132 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 422 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2161 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1715 ; 1.562 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2772 ; 2.378 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1133 ; 2.725 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1071 ; 3.921 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7589 1.7783 -20.1697 REMARK 3 T TENSOR REMARK 3 T11: 0.0680 T22: 0.0340 REMARK 3 T33: 0.0451 T12: 0.0045 REMARK 3 T13: -0.0218 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.9894 L22: 2.0523 REMARK 3 L33: 2.8123 L12: 0.9109 REMARK 3 L13: -1.1193 L23: -0.7563 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: 0.0422 S13: -0.0754 REMARK 3 S21: 0.0095 S22: -0.0240 S23: -0.0088 REMARK 3 S31: 0.0161 S32: 0.0164 S33: 0.0546 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 67 REMARK 3 ORIGIN FOR THE GROUP (A): -36.6043 17.9628 13.8051 REMARK 3 T TENSOR REMARK 3 T11: 0.0446 T22: 0.1145 REMARK 3 T33: 0.0738 T12: 0.0266 REMARK 3 T13: -0.0028 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 0.6218 L22: 0.3550 REMARK 3 L33: 1.1579 L12: -0.0926 REMARK 3 L13: -0.6334 L23: 0.2619 REMARK 3 S TENSOR REMARK 3 S11: 0.0771 S12: 0.0679 S13: 0.0707 REMARK 3 S21: -0.0193 S22: -0.0476 S23: 0.0952 REMARK 3 S31: -0.1044 S32: -0.2262 S33: -0.0295 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 68 A 87 REMARK 3 ORIGIN FOR THE GROUP (A): -39.4998 11.5771 16.2279 REMARK 3 T TENSOR REMARK 3 T11: 0.0125 T22: 0.1039 REMARK 3 T33: 0.1002 T12: 0.0111 REMARK 3 T13: -0.0082 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.2595 L22: 3.2626 REMARK 3 L33: 1.7730 L12: -0.7158 REMARK 3 L13: -1.1654 L23: 1.0674 REMARK 3 S TENSOR REMARK 3 S11: -0.0340 S12: 0.1867 S13: -0.1965 REMARK 3 S21: -0.1218 S22: -0.1850 S23: 0.5115 REMARK 3 S31: -0.0279 S32: -0.3640 S33: 0.2190 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 88 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): -32.7702 16.2124 28.8235 REMARK 3 T TENSOR REMARK 3 T11: 0.0481 T22: 0.0869 REMARK 3 T33: 0.0616 T12: 0.0179 REMARK 3 T13: 0.0264 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.3851 L22: 1.5781 REMARK 3 L33: 1.2542 L12: 0.4143 REMARK 3 L13: 0.1435 L23: 0.6288 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: -0.1236 S13: 0.0145 REMARK 3 S21: 0.0967 S22: -0.0973 S23: 0.1987 REMARK 3 S31: -0.0129 S32: -0.2009 S33: 0.0947 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 131 A 167 REMARK 3 ORIGIN FOR THE GROUP (A): -18.3965 21.8812 30.6489 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: 0.0745 REMARK 3 T33: 0.0609 T12: 0.0117 REMARK 3 T13: 0.0080 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 1.9287 L22: 0.7407 REMARK 3 L33: 1.0744 L12: -0.2049 REMARK 3 L13: -0.2092 L23: -0.0211 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: -0.0812 S13: 0.1878 REMARK 3 S21: 0.0110 S22: 0.0201 S23: -0.0751 REMARK 3 S31: -0.1594 S32: 0.0202 S33: 0.0107 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 168 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): -19.4463 13.2225 22.5112 REMARK 3 T TENSOR REMARK 3 T11: 0.0519 T22: 0.0557 REMARK 3 T33: 0.0527 T12: 0.0087 REMARK 3 T13: 0.0070 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.7626 L22: 1.0611 REMARK 3 L33: 1.3548 L12: 0.3188 REMARK 3 L13: -0.2531 L23: -0.3165 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: -0.0230 S13: 0.0371 REMARK 3 S21: 0.0627 S22: -0.0017 S23: 0.0698 REMARK 3 S31: -0.0612 S32: -0.0498 S33: 0.0010 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 216 A 229 REMARK 3 ORIGIN FOR THE GROUP (A): -21.3200 30.7907 18.1478 REMARK 3 T TENSOR REMARK 3 T11: 0.1264 T22: 0.0325 REMARK 3 T33: 0.1081 T12: -0.0157 REMARK 3 T13: 0.0210 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 4.6477 L22: 0.2491 REMARK 3 L33: 0.5242 L12: 0.4121 REMARK 3 L13: -0.8178 L23: 0.2114 REMARK 3 S TENSOR REMARK 3 S11: 0.1588 S12: 0.0710 S13: 0.4577 REMARK 3 S21: -0.0859 S22: 0.0406 S23: -0.0364 REMARK 3 S31: -0.1683 S32: 0.0580 S33: -0.1994 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 230 A 274 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3851 13.9268 11.2865 REMARK 3 T TENSOR REMARK 3 T11: 0.0547 T22: 0.0558 REMARK 3 T33: 0.0358 T12: 0.0014 REMARK 3 T13: 0.0029 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.6060 L22: 0.2692 REMARK 3 L33: 0.6781 L12: -0.0633 REMARK 3 L13: -0.0298 L23: -0.2262 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: 0.0492 S13: 0.0159 REMARK 3 S21: -0.0395 S22: 0.0000 S23: -0.0113 REMARK 3 S31: -0.0260 S32: 0.0228 S33: 0.0093 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 275 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): -26.0993 18.3184 3.9982 REMARK 3 T TENSOR REMARK 3 T11: 0.0501 T22: 0.0993 REMARK 3 T33: 0.0568 T12: 0.0014 REMARK 3 T13: 0.0100 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.2236 L22: 2.0139 REMARK 3 L33: 1.7538 L12: -0.7954 REMARK 3 L13: 0.4245 L23: -1.1184 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: 0.0987 S13: 0.0521 REMARK 3 S21: -0.0210 S22: 0.0026 S23: 0.0373 REMARK 3 S31: -0.0692 S32: -0.1602 S33: -0.0259 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 304 A 326 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0005 12.7124 2.6271 REMARK 3 T TENSOR REMARK 3 T11: 0.0362 T22: 0.0600 REMARK 3 T33: 0.0337 T12: -0.0030 REMARK 3 T13: -0.0040 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.3269 L22: 0.6743 REMARK 3 L33: 1.7333 L12: -0.6477 REMARK 3 L13: -0.5676 L23: 0.3271 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: 0.1162 S13: -0.0691 REMARK 3 S21: -0.0264 S22: -0.0228 S23: 0.0903 REMARK 3 S31: -0.0168 S32: -0.1336 S33: 0.0182 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 327 A 333 REMARK 3 ORIGIN FOR THE GROUP (A): -38.5948 12.1886 3.2024 REMARK 3 T TENSOR REMARK 3 T11: 0.0547 T22: 0.2005 REMARK 3 T33: 0.1811 T12: 0.0294 REMARK 3 T13: -0.0491 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 17.0296 L22: 13.0757 REMARK 3 L33: 14.0963 L12: -3.9118 REMARK 3 L13: 0.1965 L23: 3.8918 REMARK 3 S TENSOR REMARK 3 S11: 0.3700 S12: 1.2057 S13: -0.9731 REMARK 3 S21: -0.8242 S22: -0.1537 S23: 0.6577 REMARK 3 S31: -0.2807 S32: -0.3481 S33: -0.2163 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES RESIDUAL ONLY REMARK 4 REMARK 4 2WOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1290040574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29316 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 25.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 46.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1GZG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.5, 200 MM MGCL2, 30 REMARK 280 % PEG400 TEMPERATURE = 17 C PROTEIN CONCENTRATION = 20 MG/ML, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 42.22200 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 42.22200 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 79.26400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 42.22200 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 42.22200 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 79.26400 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 42.22200 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 42.22200 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 79.26400 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 42.22200 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 42.22200 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 79.26400 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 42.22200 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 42.22200 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 79.26400 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 42.22200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 42.22200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 79.26400 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 42.22200 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 42.22200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 79.26400 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 42.22200 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 42.22200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 79.26400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 51970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 70990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -172.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2176 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PHE A 3 REMARK 465 THR A 4 REMARK 465 ARG A 334 REMARK 465 ARG A 335 REMARK 465 GLY A 336 REMARK 465 ARG A 337 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 5 N CA CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 139 45.75 -83.94 REMARK 500 LYS A 226 -161.20 -114.90 REMARK 500 TYR A 232 -41.43 -140.31 REMARK 500 PRO A 261 -169.21 -61.53 REMARK 500 PRO A 264 0.37 -69.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE HETGROUP AYC (ALAREMYCIN 2) DIFFERS FROM ALAREMYCIN, REMARK 600 AN ANTIBIOTIC ISOLATED FROM STREPTOMYCES SP. REMARK 600 ATCC: A012304, BY THE REDUCTION/HYDROGENATION OF THE C5 REMARK 600 C=C DOUBLE BOND ADJACENT TO THE CENTRAL KETONE GROUP. REMARK 600 THIS RESULTS IN A NON-PLANAR SP3-HYBRIDIZED C5 AND AN REMARK 600 ADJACENT METHYL GROUP. REMARK 600 ALAREMYCIN AND ITS PURIFICATION ARE DESCRIBED IN REMARK 600 HTTP://WWW.JSTAGE.JST.GO.JP/ARTICLE/BBB/69/9/69_1721/ REMARK 600 THE BOND BETWEEN ATOM NZ OF LYS A260 AND AYC A1333 IS A REMARK 600 DOUBLE SCHIFF BASE BOND. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EPE A 1338 REMARK 610 PE5 A 1340 REMARK 610 PE5 A 1341 REMARK 610 PE5 A 1342 REMARK 610 PE5 A 1343 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1337 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 37 OD1 REMARK 620 2 ASP A 319 O 93.9 REMARK 620 3 HOH A2018 O 101.1 101.3 REMARK 620 4 HOH A2022 O 171.3 89.8 85.9 REMARK 620 5 HOH A2031 O 80.9 167.1 91.2 93.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1336 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 131 OD1 REMARK 620 2 ASP A 139 OD2 94.6 REMARK 620 3 HOH A2090 O 150.1 79.8 REMARK 620 4 HOH A2105 O 89.1 156.6 85.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1335 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 245 OE1 REMARK 620 2 HOH A2107 O 175.5 REMARK 620 3 HOH A2108 O 85.0 95.4 REMARK 620 4 HOH A2137 O 97.7 86.8 89.4 REMARK 620 5 HOH A2139 O 90.6 84.9 97.0 170.0 REMARK 620 6 HOH A2140 O 82.4 97.9 164.0 82.6 93.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1334 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2025 O REMARK 620 2 HOH A2059 O 98.0 REMARK 620 3 HOH A2167 O 174.7 85.2 REMARK 620 4 HOH A2169 O 87.6 88.7 88.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AYC A 1333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 1338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 1339 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 1340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 1341 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 1342 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 1343 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2C18 RELATED DB: PDB REMARK 900 5-(4-CARBOXY-2-OXO-BUTANE-1-SULFONYL)-4 -OXO-PENTANOIC ACID BOUND REMARK 900 TO PORPHOBILINOGEN SYNTHASE FROM PSEUDOMONAS AERUGINOSA REMARK 900 RELATED ID: 2C14 RELATED DB: PDB REMARK 900 5-(4-CARBOXY-2-OXO-BUTYLAMINO)-4-OXO- PENTANOIC ACID ACID BOUND TO REMARK 900 PORPHOBILINOGEN SYNTHASE FROM PSEUDOMONAS AERUGINOSA REMARK 900 RELATED ID: 1GZG RELATED DB: PDB REMARK 900 COMPLEX OF A MG2-DEPENDENT PORPHOBILINOGEN SYNTHASE (MUTANT D139N) REMARK 900 WITH 5-FLUOROLEVULINIC ACID REMARK 900 RELATED ID: 2C19 RELATED DB: PDB REMARK 900 5-(4-CARBOXY-2-OXO-BUTYLSULFANYL)-4-OXO- PENTANOIC ACID ACID BOUND REMARK 900 TO PORPHOBILINOGEN SYNTHASE FROM PSEUDOMONAS AERUGINOSA REMARK 900 RELATED ID: 1W5P RELATED DB: PDB REMARK 900 STEPWISE INTRODUCTION OF ZINC BINDING SITE INTO PORPHOBILINOGEN REMARK 900 SYNTHASE OF PSEUDOMONAS AERUGINOSA (MUTANTIONS A129C, D131C, D139C, REMARK 900 P132E) REMARK 900 RELATED ID: 2C13 RELATED DB: PDB REMARK 900 5-HYDROXY-LEVULINIC ACID BOUND TO PORPHOBILINOGEN SYNTHASE FROM REMARK 900 PSEUDOMONAS AERUGINOSA REMARK 900 RELATED ID: 1W5N RELATED DB: PDB REMARK 900 STEPWISE INTRODUCTION OF ZINC BINDING SITE INTO PORPHOBILINOGEN REMARK 900 SYNTHASE OF PSEUDOMONAS AERUGINOSA (MUTANTIONS D131C AND D139C) REMARK 900 RELATED ID: 1W5Q RELATED DB: PDB REMARK 900 STEPWISE INTRODUCTION OF ZINC BINDING SITE INTO PORPHOBILINOGEN REMARK 900 SYNTHASE OF PSEUDOMONAS AERUGINOSA (MUTANTIONS A129C, D131C, D139C, REMARK 900 P132E, K229R) REMARK 900 RELATED ID: 1W54 RELATED DB: PDB REMARK 900 STEPWISE INTRODUCTION OF A ZINC BINDING SITE INTO PORPHOBILINOGEN REMARK 900 SYNTHASE FROM PSEUDOMONAS AERUGINOSA (MUTATION D139C) REMARK 900 RELATED ID: 1W5M RELATED DB: PDB REMARK 900 STEPWISE INTRODUCTION OF ZINC BINDING SITE INTO PORPHOBILINOGEN REMARK 900 SYNTHASE OF PSEUDOMONAS AERUGINOSA (MUTANTIONS A129C AND D139C) REMARK 900 RELATED ID: 1W5O RELATED DB: PDB REMARK 900 STEPWISE INTRODUCTION OF ZINC BINDING SITE INTO PORPHOBILINOGEN REMARK 900 SYNTHASE OF PSEUDOMONAS AERUGINOSA (MUTANTIONS A129C, D131C AND REMARK 900 D139C) REMARK 900 RELATED ID: 1W56 RELATED DB: PDB REMARK 900 STEPWISE INTRODUCTION OF ZINC BINDING SITE INTO PORPHOBILINOGEN REMARK 900 SYNTHASE OF PSEUDOMONAS AERUGINOSA (MUTANTIONS A129C AND D131C) REMARK 900 RELATED ID: 2C16 RELATED DB: PDB REMARK 900 5-(4-CARBOXY-2-OXO-BUTANE-1-SULFINYL)-4 -OXO-PENTANOIC ACID ACID REMARK 900 BOUND TO PORPHOBILINOGEN SYNTHASE FROM PSEUDOMONAS AERUGINOSA REMARK 900 RELATED ID: 2C15 RELATED DB: PDB REMARK 900 5-(4-CARBOXY-2-OXO-BUTOXY)-4-OXO- PENTANOIC ACID ACID BOUND TO REMARK 900 PORPHOBILINOGEN SYNTHASE FROM PSEUDOMONAS AERUGINOSA REMARK 900 RELATED ID: 1B4K RELATED DB: PDB REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF A MG2- DEPENDENT 5- REMARK 900 AMINOLEVULINIC ACID DEHYDRATASE DBREF 2WOQ A 1 337 UNP Q59643 HEM2_PSEAE 1 337 SEQRES 1 A 337 MET SER PHE THR PRO ALA ASN ARG ALA TYR PRO TYR THR SEQRES 2 A 337 ARG LEU ARG ARG ASN ARG ARG ASP ASP PHE SER ARG ARG SEQRES 3 A 337 LEU VAL ARG GLU ASN VAL LEU THR VAL ASP ASP LEU ILE SEQRES 4 A 337 LEU PRO VAL PHE VAL LEU ASP GLY VAL ASN GLN ARG GLU SEQRES 5 A 337 SER ILE PRO SER MET PRO GLY VAL GLU ARG LEU SER ILE SEQRES 6 A 337 ASP GLN LEU LEU ILE GLU ALA GLU GLU TRP VAL ALA LEU SEQRES 7 A 337 GLY ILE PRO ALA LEU ALA LEU PHE PRO VAL THR PRO VAL SEQRES 8 A 337 GLU LYS LYS SER LEU ASP ALA ALA GLU ALA TYR ASN PRO SEQRES 9 A 337 GLU GLY ILE ALA GLN ARG ALA THR ARG ALA LEU ARG GLU SEQRES 10 A 337 ARG PHE PRO GLU LEU GLY ILE ILE THR ASP VAL ALA LEU SEQRES 11 A 337 ASP PRO PHE THR THR HIS GLY GLN ASP GLY ILE LEU ASP SEQRES 12 A 337 ASP ASP GLY TYR VAL LEU ASN ASP VAL SER ILE ASP VAL SEQRES 13 A 337 LEU VAL ARG GLN ALA LEU SER HIS ALA GLU ALA GLY ALA SEQRES 14 A 337 GLN VAL VAL ALA PRO SER ASP MET MET ASP GLY ARG ILE SEQRES 15 A 337 GLY ALA ILE ARG GLU ALA LEU GLU SER ALA GLY HIS THR SEQRES 16 A 337 ASN VAL ARG ILE MET ALA TYR SER ALA LYS TYR ALA SER SEQRES 17 A 337 ALA TYR TYR GLY PRO PHE ARG ASP ALA VAL GLY SER ALA SEQRES 18 A 337 SER ASN LEU GLY LYS GLY ASN LYS ALA THR TYR GLN MET SEQRES 19 A 337 ASP PRO ALA ASN SER ASP GLU ALA LEU HIS GLU VAL ALA SEQRES 20 A 337 ALA ASP LEU ALA GLU GLY ALA ASP MET VAL MET VAL LYS SEQRES 21 A 337 PRO GLY MET PRO TYR LEU ASP ILE VAL ARG ARG VAL LYS SEQRES 22 A 337 ASP GLU PHE ARG ALA PRO THR PHE VAL TYR GLN VAL SER SEQRES 23 A 337 GLY GLU TYR ALA MET HIS MET GLY ALA ILE GLN ASN GLY SEQRES 24 A 337 TRP LEU ALA GLU SER VAL ILE LEU GLU SER LEU THR ALA SEQRES 25 A 337 PHE LYS ARG ALA GLY ALA ASP GLY ILE LEU THR TYR PHE SEQRES 26 A 337 ALA LYS GLN ALA ALA GLU GLN LEU ARG ARG GLY ARG HET AYC A1333 12 HET MG A1334 1 HET MG A1335 1 HET MG A1336 1 HET MG A1337 1 HET EPE A1338 9 HET EPE A1339 15 HET PE5 A1340 14 HET PE5 A1341 18 HET PE5 A1342 13 HET PE5 A1343 12 HETNAM AYC ALAREMYCIN 2 HETNAM MG MAGNESIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL HETSYN AYC (5R)-5-ACETAMIDO-4-OXO-HEXANOIC ACID HETSYN EPE HEPES HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE HETSYN 3 PE5 GLYCOL PEG400 FORMUL 2 AYC C8 H13 N O4 FORMUL 3 MG 4(MG 2+) FORMUL 7 EPE 2(C8 H18 N2 O4 S) FORMUL 9 PE5 4(C18 H38 O9) FORMUL 13 HOH *176(H2 O) HELIX 1 1 LEU A 15 ARG A 20 1 6 HELIX 2 2 ASP A 22 ARG A 29 1 8 HELIX 3 3 VAL A 35 ASP A 37 5 3 HELIX 4 4 ILE A 65 LEU A 78 1 14 HELIX 5 5 ALA A 99 ASN A 103 5 5 HELIX 6 6 ILE A 107 PHE A 119 1 13 HELIX 7 7 ASN A 150 ALA A 167 1 18 HELIX 8 8 ARG A 181 ALA A 192 1 12 HELIX 9 9 GLY A 212 VAL A 218 1 7 HELIX 10 10 ASN A 228 TYR A 232 5 5 HELIX 11 11 SER A 239 GLU A 252 1 14 HELIX 12 12 LEU A 266 PHE A 276 1 11 HELIX 13 13 GLY A 287 GLN A 297 1 11 HELIX 14 14 SER A 304 ALA A 316 1 13 HELIX 15 15 PHE A 325 GLN A 332 1 8 SHEET 1 AA 4 ARG A 51 SER A 53 0 SHEET 2 AA 4 GLU A 61 SER A 64 -1 O ARG A 62 N GLU A 52 SHEET 3 AA 4 ILE A 39 LEU A 45 1 O PHE A 43 N LEU A 63 SHEET 4 AA 4 ALA A 82 PRO A 87 1 O ALA A 82 N LEU A 40 SHEET 1 AB 6 ILE A 125 VAL A 128 0 SHEET 2 AB 6 VAL A 171 PRO A 174 1 O VAL A 171 N THR A 126 SHEET 3 AB 6 ARG A 198 LYS A 205 1 O ARG A 198 N VAL A 172 SHEET 4 AB 6 MET A 256 LYS A 260 1 O MET A 256 N ALA A 201 SHEET 5 AB 6 THR A 280 GLN A 284 1 O PHE A 281 N VAL A 259 SHEET 6 AB 6 LEU A 322 THR A 323 1 O LEU A 322 N GLN A 284 LINK NZ LYS A 260 CAU AYC A1333 1555 1555 1.29 LINK OD1 ASP A 37 MG MG A1337 1555 1555 2.11 LINK OD1 ASP A 131 MG MG A1336 1555 1555 2.05 LINK OD2 ASP A 139 MG MG A1336 1555 1555 1.97 LINK OE1 GLU A 245 MG MG A1335 1555 1555 1.97 LINK O ASP A 319 MG MG A1337 1555 1555 2.14 LINK MG MG A1334 O HOH A2025 1555 6555 2.12 LINK MG MG A1334 O HOH A2059 1555 1555 2.01 LINK MG MG A1334 O HOH A2167 1555 1555 1.92 LINK MG MG A1334 O HOH A2169 1555 1555 2.00 LINK MG MG A1335 O HOH A2107 1555 1555 2.05 LINK MG MG A1335 O HOH A2108 1555 1555 2.12 LINK MG MG A1335 O HOH A2137 1555 1555 2.12 LINK MG MG A1335 O HOH A2139 1555 1555 2.04 LINK MG MG A1335 O HOH A2140 1555 1555 2.16 LINK MG MG A1336 O HOH A2090 1555 1555 2.03 LINK MG MG A1336 O HOH A2105 1555 1555 1.94 LINK MG MG A1337 O HOH A2018 1555 6555 1.48 LINK MG MG A1337 O HOH A2022 1555 6555 1.82 LINK MG MG A1337 O HOH A2031 1555 1555 2.23 CISPEP 1 TYR A 10 PRO A 11 0 2.27 CISPEP 2 LYS A 260 PRO A 261 0 -8.22 SITE 1 AC1 13 ASP A 131 SER A 175 TYR A 202 LYS A 205 SITE 2 AC1 13 TYR A 211 PHE A 214 LYS A 260 TYR A 283 SITE 3 AC1 13 VAL A 285 SER A 286 TYR A 324 HOH A2085 SITE 4 AC1 13 HOH A2173 SITE 1 AC2 4 HOH A2025 HOH A2059 HOH A2167 HOH A2169 SITE 1 AC3 6 GLU A 245 HOH A2107 HOH A2108 HOH A2137 SITE 2 AC3 6 HOH A2139 HOH A2140 SITE 1 AC4 5 ASP A 131 ASP A 139 ASP A 176 HOH A2090 SITE 2 AC4 5 HOH A2105 SITE 1 AC5 6 LEU A 27 ASP A 37 ASP A 319 HOH A2018 SITE 2 AC5 6 HOH A2022 HOH A2031 SITE 1 AC6 4 GLU A 30 ASN A 31 VAL A 32 HOH A2174 SITE 1 AC7 7 ARG A 20 TYR A 147 GLY A 193 THR A 195 SITE 2 AC7 7 ASN A 196 HOH A2092 HOH A2118 SITE 1 AC8 3 TYR A 10 TYR A 12 GLU A 190 SITE 1 AC9 3 ILE A 141 PE5 A1342 HOH A2176 SITE 1 BC1 6 ASP A 97 VAL A 152 ASP A 155 PE5 A1341 SITE 2 BC1 6 HOH A2175 HOH A2176 SITE 1 BC2 8 ALA A 99 TYR A 102 ASN A 103 PRO A 104 SITE 2 BC2 8 ASP A 155 VAL A 158 ARG A 159 HOH A2065 CRYST1 84.444 84.444 158.528 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011842 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011842 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006308 0.00000