HEADER LYASE/ANTIBIOTIC 27-JUL-09 2WOQ
TITLE PORPHOBILINOGEN SYNTHASE (HEMB) IN COMPLEX WITH 5-ACETAMIDO-4-
TITLE 2 OXOHEXANOIC ACID (ALAREMYCIN 2)
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DELTA-AMINOLEVULINIC ACID DEHYDRATASE;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: PORPHOBILINOGEN SYNTHASE, ALADH, ALAD;
COMPND 5 EC: 4.2.1.24;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA;
SOURCE 3 ORGANISM_TAXID: 287;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693;
SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 PLUS
KEYWDS LYASE-ANTIBIOTIC COMPLEX, LYASE ANTIBIOTIC COMPLEX, METAL-BINDING,
KEYWDS 2 HEME BIOSYNTHESIS, PORPHYRIN BIOSYNTHESIS, PORPOBILINOGEN SYNTHASE,
KEYWDS 3 HEMB, LYASE, INHIBITOR
EXPDTA X-RAY DIFFRACTION
AUTHOR I.U.HEINEMANN,C.SCHULZ,W.-D.SCHUBERT,D.W.HEINZ,Y.-G.WANG,Y.KOBAYASHI,
AUTHOR 2 Y.AWA,M.WACHI,D.JAHN,M.JAHN
REVDAT 7 16-OCT-24 2WOQ 1 REMARK
REVDAT 6 20-DEC-23 2WOQ 1 REMARK HETSYN LINK
REVDAT 5 27-FEB-19 2WOQ 1 JRNL REMARK LINK
REVDAT 4 13-JUL-11 2WOQ 1 VERSN
REVDAT 3 29-DEC-09 2WOQ 1 KEYWDS JRNL
REVDAT 2 03-NOV-09 2WOQ 1 HEADER
REVDAT 1 27-OCT-09 2WOQ 0
JRNL AUTH I.U.HEINEMANN,C.SCHULZ,W.D.SCHUBERT,D.W.HEINZ,Y.G.WANG,
JRNL AUTH 2 Y.KOBAYASHI,Y.AWA,M.WACHI,D.JAHN,M.JAHN
JRNL TITL STRUCTURE OF THE HEME BIOSYNTHETIC PSEUDOMONAS AERUGINOSA
JRNL TITL 2 PORPHOBILINOGEN SYNTHASE IN COMPLEX WITH THE ANTIBIOTIC
JRNL TITL 3 ALAREMYCIN.
JRNL REF ANTIMICROB. AGENTS V. 54 267 2010
JRNL REF 2 CHEMOTHER.
JRNL REFN ESSN 1098-6596
JRNL PMID 19822707
JRNL DOI 10.1128/AAC.00553-09
REMARK 2
REMARK 2 RESOLUTION. 1.75 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.5.0088
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.31
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 27822
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.147
REMARK 3 R VALUE (WORKING SET) : 0.146
REMARK 3 FREE R VALUE : 0.180
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 1488
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2006
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95
REMARK 3 BIN R VALUE (WORKING SET) : 0.2350
REMARK 3 BIN FREE R VALUE SET COUNT : 103
REMARK 3 BIN FREE R VALUE : 0.2750
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 2531
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 97
REMARK 3 SOLVENT ATOMS : 176
REMARK 3
REMARK 3 B VALUES.
REMARK 3 B VALUE TYPE : LIKELY RESIDUAL
REMARK 3 FROM WILSON PLOT (A**2) : 18.60
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.05
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.00000
REMARK 3 B22 (A**2) : 0.00000
REMARK 3 B33 (A**2) : 0.01000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.112
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.847
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2848 ; 0.020 ; 0.022
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3867 ; 1.574 ; 1.998
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 4.174 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;32.366 ;23.285
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;11.798 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;19.132 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 422 ; 0.124 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2161 ; 0.009 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1715 ; 1.562 ; 1.500
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2772 ; 2.378 ; 2.000
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1133 ; 2.725 ; 3.000
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1071 ; 3.921 ; 4.500
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 11
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 5 A 28
REMARK 3 ORIGIN FOR THE GROUP (A): -20.7589 1.7783 -20.1697
REMARK 3 T TENSOR
REMARK 3 T11: 0.0680 T22: 0.0340
REMARK 3 T33: 0.0451 T12: 0.0045
REMARK 3 T13: -0.0218 T23: -0.0154
REMARK 3 L TENSOR
REMARK 3 L11: 2.9894 L22: 2.0523
REMARK 3 L33: 2.8123 L12: 0.9109
REMARK 3 L13: -1.1193 L23: -0.7563
REMARK 3 S TENSOR
REMARK 3 S11: -0.0307 S12: 0.0422 S13: -0.0754
REMARK 3 S21: 0.0095 S22: -0.0240 S23: -0.0088
REMARK 3 S31: 0.0161 S32: 0.0164 S33: 0.0546
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 29 A 67
REMARK 3 ORIGIN FOR THE GROUP (A): -36.6043 17.9628 13.8051
REMARK 3 T TENSOR
REMARK 3 T11: 0.0446 T22: 0.1145
REMARK 3 T33: 0.0738 T12: 0.0266
REMARK 3 T13: -0.0028 T23: -0.0181
REMARK 3 L TENSOR
REMARK 3 L11: 0.6218 L22: 0.3550
REMARK 3 L33: 1.1579 L12: -0.0926
REMARK 3 L13: -0.6334 L23: 0.2619
REMARK 3 S TENSOR
REMARK 3 S11: 0.0771 S12: 0.0679 S13: 0.0707
REMARK 3 S21: -0.0193 S22: -0.0476 S23: 0.0952
REMARK 3 S31: -0.1044 S32: -0.2262 S33: -0.0295
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 68 A 87
REMARK 3 ORIGIN FOR THE GROUP (A): -39.4998 11.5771 16.2279
REMARK 3 T TENSOR
REMARK 3 T11: 0.0125 T22: 0.1039
REMARK 3 T33: 0.1002 T12: 0.0111
REMARK 3 T13: -0.0082 T23: -0.0373
REMARK 3 L TENSOR
REMARK 3 L11: 1.2595 L22: 3.2626
REMARK 3 L33: 1.7730 L12: -0.7158
REMARK 3 L13: -1.1654 L23: 1.0674
REMARK 3 S TENSOR
REMARK 3 S11: -0.0340 S12: 0.1867 S13: -0.1965
REMARK 3 S21: -0.1218 S22: -0.1850 S23: 0.5115
REMARK 3 S31: -0.0279 S32: -0.3640 S33: 0.2190
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 88 A 130
REMARK 3 ORIGIN FOR THE GROUP (A): -32.7702 16.2124 28.8235
REMARK 3 T TENSOR
REMARK 3 T11: 0.0481 T22: 0.0869
REMARK 3 T33: 0.0616 T12: 0.0179
REMARK 3 T13: 0.0264 T23: -0.0117
REMARK 3 L TENSOR
REMARK 3 L11: 1.3851 L22: 1.5781
REMARK 3 L33: 1.2542 L12: 0.4143
REMARK 3 L13: 0.1435 L23: 0.6288
REMARK 3 S TENSOR
REMARK 3 S11: 0.0026 S12: -0.1236 S13: 0.0145
REMARK 3 S21: 0.0967 S22: -0.0973 S23: 0.1987
REMARK 3 S31: -0.0129 S32: -0.2009 S33: 0.0947
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 131 A 167
REMARK 3 ORIGIN FOR THE GROUP (A): -18.3965 21.8812 30.6489
REMARK 3 T TENSOR
REMARK 3 T11: 0.0898 T22: 0.0745
REMARK 3 T33: 0.0609 T12: 0.0117
REMARK 3 T13: 0.0080 T23: -0.0289
REMARK 3 L TENSOR
REMARK 3 L11: 1.9287 L22: 0.7407
REMARK 3 L33: 1.0744 L12: -0.2049
REMARK 3 L13: -0.2092 L23: -0.0211
REMARK 3 S TENSOR
REMARK 3 S11: -0.0308 S12: -0.0812 S13: 0.1878
REMARK 3 S21: 0.0110 S22: 0.0201 S23: -0.0751
REMARK 3 S31: -0.1594 S32: 0.0202 S33: 0.0107
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 168 A 215
REMARK 3 ORIGIN FOR THE GROUP (A): -19.4463 13.2225 22.5112
REMARK 3 T TENSOR
REMARK 3 T11: 0.0519 T22: 0.0557
REMARK 3 T33: 0.0527 T12: 0.0087
REMARK 3 T13: 0.0070 T23: -0.0169
REMARK 3 L TENSOR
REMARK 3 L11: 0.7626 L22: 1.0611
REMARK 3 L33: 1.3548 L12: 0.3188
REMARK 3 L13: -0.2531 L23: -0.3165
REMARK 3 S TENSOR
REMARK 3 S11: 0.0007 S12: -0.0230 S13: 0.0371
REMARK 3 S21: 0.0627 S22: -0.0017 S23: 0.0698
REMARK 3 S31: -0.0612 S32: -0.0498 S33: 0.0010
REMARK 3
REMARK 3 TLS GROUP : 7
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 216 A 229
REMARK 3 ORIGIN FOR THE GROUP (A): -21.3200 30.7907 18.1478
REMARK 3 T TENSOR
REMARK 3 T11: 0.1264 T22: 0.0325
REMARK 3 T33: 0.1081 T12: -0.0157
REMARK 3 T13: 0.0210 T23: -0.0100
REMARK 3 L TENSOR
REMARK 3 L11: 4.6477 L22: 0.2491
REMARK 3 L33: 0.5242 L12: 0.4121
REMARK 3 L13: -0.8178 L23: 0.2114
REMARK 3 S TENSOR
REMARK 3 S11: 0.1588 S12: 0.0710 S13: 0.4577
REMARK 3 S21: -0.0859 S22: 0.0406 S23: -0.0364
REMARK 3 S31: -0.1683 S32: 0.0580 S33: -0.1994
REMARK 3
REMARK 3 TLS GROUP : 8
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 230 A 274
REMARK 3 ORIGIN FOR THE GROUP (A): -12.3851 13.9268 11.2865
REMARK 3 T TENSOR
REMARK 3 T11: 0.0547 T22: 0.0558
REMARK 3 T33: 0.0358 T12: 0.0014
REMARK 3 T13: 0.0029 T23: -0.0046
REMARK 3 L TENSOR
REMARK 3 L11: 0.6060 L22: 0.2692
REMARK 3 L33: 0.6781 L12: -0.0633
REMARK 3 L13: -0.0298 L23: -0.2262
REMARK 3 S TENSOR
REMARK 3 S11: -0.0092 S12: 0.0492 S13: 0.0159
REMARK 3 S21: -0.0395 S22: 0.0000 S23: -0.0113
REMARK 3 S31: -0.0260 S32: 0.0228 S33: 0.0093
REMARK 3
REMARK 3 TLS GROUP : 9
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 275 A 303
REMARK 3 ORIGIN FOR THE GROUP (A): -26.0993 18.3184 3.9982
REMARK 3 T TENSOR
REMARK 3 T11: 0.0501 T22: 0.0993
REMARK 3 T33: 0.0568 T12: 0.0014
REMARK 3 T13: 0.0100 T23: -0.0050
REMARK 3 L TENSOR
REMARK 3 L11: 1.2236 L22: 2.0139
REMARK 3 L33: 1.7538 L12: -0.7954
REMARK 3 L13: 0.4245 L23: -1.1184
REMARK 3 S TENSOR
REMARK 3 S11: 0.0233 S12: 0.0987 S13: 0.0521
REMARK 3 S21: -0.0210 S22: 0.0026 S23: 0.0373
REMARK 3 S31: -0.0692 S32: -0.1602 S33: -0.0259
REMARK 3
REMARK 3 TLS GROUP : 10
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 304 A 326
REMARK 3 ORIGIN FOR THE GROUP (A): -27.0005 12.7124 2.6271
REMARK 3 T TENSOR
REMARK 3 T11: 0.0362 T22: 0.0600
REMARK 3 T33: 0.0337 T12: -0.0030
REMARK 3 T13: -0.0040 T23: -0.0086
REMARK 3 L TENSOR
REMARK 3 L11: 1.3269 L22: 0.6743
REMARK 3 L33: 1.7333 L12: -0.6477
REMARK 3 L13: -0.5676 L23: 0.3271
REMARK 3 S TENSOR
REMARK 3 S11: 0.0046 S12: 0.1162 S13: -0.0691
REMARK 3 S21: -0.0264 S22: -0.0228 S23: 0.0903
REMARK 3 S31: -0.0168 S32: -0.1336 S33: 0.0182
REMARK 3
REMARK 3 TLS GROUP : 11
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 327 A 333
REMARK 3 ORIGIN FOR THE GROUP (A): -38.5948 12.1886 3.2024
REMARK 3 T TENSOR
REMARK 3 T11: 0.0547 T22: 0.2005
REMARK 3 T33: 0.1811 T12: 0.0294
REMARK 3 T13: -0.0491 T23: -0.0024
REMARK 3 L TENSOR
REMARK 3 L11: 17.0296 L22: 13.0757
REMARK 3 L33: 14.0963 L12: -3.9118
REMARK 3 L13: 0.1965 L23: 3.8918
REMARK 3 S TENSOR
REMARK 3 S11: 0.3700 S12: 1.2057 S13: -0.9731
REMARK 3 S21: -0.8242 S22: -0.1537 S23: 0.6577
REMARK 3 S31: -0.2807 S32: -0.3481 S33: -0.2163
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.40
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS. U VALUES RESIDUAL ONLY
REMARK 4
REMARK 4 2WOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUL-09.
REMARK 100 THE DEPOSITION ID IS D_1290040574.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 19-APR-06
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : BESSY
REMARK 200 BEAMLINE : 14.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373
REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL
REMARK 200 OPTICS : MIRRORS
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29316
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750
REMARK 200 RESOLUTION RANGE LOW (A) : 25.300
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 13.70
REMARK 200 R MERGE (I) : 0.07000
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 46.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 8.60
REMARK 200 R MERGE FOR SHELL (I) : 0.50000
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.200
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDB ENTRY 1GZG
REMARK 200
REMARK 200 REMARK: NONE
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 42.58
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.5, 200 MM MGCL2, 30
REMARK 280 % PEG400 TEMPERATURE = 17 C PROTEIN CONCENTRATION = 20 MG/ML,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -Y,X,Z
REMARK 290 4555 Y,-X,Z
REMARK 290 5555 -X,Y,-Z
REMARK 290 6555 X,-Y,-Z
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z
REMARK 290 9555 X+1/2,Y+1/2,Z+1/2
REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2
REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2
REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2
REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 42.22200
REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 42.22200
REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 79.26400
REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 42.22200
REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 42.22200
REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 79.26400
REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 42.22200
REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 42.22200
REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 79.26400
REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 42.22200
REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 42.22200
REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 79.26400
REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 42.22200
REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 42.22200
REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 79.26400
REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 42.22200
REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 42.22200
REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 79.26400
REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 42.22200
REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 42.22200
REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 79.26400
REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 42.22200
REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 42.22200
REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 79.26400
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 51970 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 70990 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -172.6 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 350 BIOMT1 5 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 6 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A2176 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 SER A 2
REMARK 465 PHE A 3
REMARK 465 THR A 4
REMARK 465 ARG A 334
REMARK 465 ARG A 335
REMARK 465 GLY A 336
REMARK 465 ARG A 337
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 PRO A 5 N CA CB CG CD
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 139 45.75 -83.94
REMARK 500 LYS A 226 -161.20 -114.90
REMARK 500 TYR A 232 -41.43 -140.31
REMARK 500 PRO A 261 -169.21 -61.53
REMARK 500 PRO A 264 0.37 -69.40
REMARK 500
REMARK 500 REMARK: NULL
REMARK 600
REMARK 600 HETEROGEN
REMARK 600
REMARK 600 THE HETGROUP AYC (ALAREMYCIN 2) DIFFERS FROM ALAREMYCIN,
REMARK 600 AN ANTIBIOTIC ISOLATED FROM STREPTOMYCES SP.
REMARK 600 ATCC: A012304, BY THE REDUCTION/HYDROGENATION OF THE C5
REMARK 600 C=C DOUBLE BOND ADJACENT TO THE CENTRAL KETONE GROUP.
REMARK 600 THIS RESULTS IN A NON-PLANAR SP3-HYBRIDIZED C5 AND AN
REMARK 600 ADJACENT METHYL GROUP.
REMARK 600 ALAREMYCIN AND ITS PURIFICATION ARE DESCRIBED IN
REMARK 600 HTTP://WWW.JSTAGE.JST.GO.JP/ARTICLE/BBB/69/9/69_1721/
REMARK 600 THE BOND BETWEEN ATOM NZ OF LYS A260 AND AYC A1333 IS A
REMARK 600 DOUBLE SCHIFF BASE BOND.
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 EPE A 1338
REMARK 610 PE5 A 1340
REMARK 610 PE5 A 1341
REMARK 610 PE5 A 1342
REMARK 610 PE5 A 1343
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A1337 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 37 OD1
REMARK 620 2 ASP A 319 O 93.9
REMARK 620 3 HOH A2018 O 101.1 101.3
REMARK 620 4 HOH A2022 O 171.3 89.8 85.9
REMARK 620 5 HOH A2031 O 80.9 167.1 91.2 93.9
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A1336 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 131 OD1
REMARK 620 2 ASP A 139 OD2 94.6
REMARK 620 3 HOH A2090 O 150.1 79.8
REMARK 620 4 HOH A2105 O 89.1 156.6 85.4
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A1335 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 245 OE1
REMARK 620 2 HOH A2107 O 175.5
REMARK 620 3 HOH A2108 O 85.0 95.4
REMARK 620 4 HOH A2137 O 97.7 86.8 89.4
REMARK 620 5 HOH A2139 O 90.6 84.9 97.0 170.0
REMARK 620 6 HOH A2140 O 82.4 97.9 164.0 82.6 93.0
REMARK 620 N 1 2 3 4 5
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A1334 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH A2025 O
REMARK 620 2 HOH A2059 O 98.0
REMARK 620 3 HOH A2167 O 174.7 85.2
REMARK 620 4 HOH A2169 O 87.6 88.7 88.2
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AYC A 1333
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1334
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1335
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1336
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1337
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 1338
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 1339
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 1340
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 1341
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 1342
REMARK 800
REMARK 800 SITE_IDENTIFIER: BC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE5 A 1343
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 2C18 RELATED DB: PDB
REMARK 900 5-(4-CARBOXY-2-OXO-BUTANE-1-SULFONYL)-4 -OXO-PENTANOIC ACID BOUND
REMARK 900 TO PORPHOBILINOGEN SYNTHASE FROM PSEUDOMONAS AERUGINOSA
REMARK 900 RELATED ID: 2C14 RELATED DB: PDB
REMARK 900 5-(4-CARBOXY-2-OXO-BUTYLAMINO)-4-OXO- PENTANOIC ACID ACID BOUND TO
REMARK 900 PORPHOBILINOGEN SYNTHASE FROM PSEUDOMONAS AERUGINOSA
REMARK 900 RELATED ID: 1GZG RELATED DB: PDB
REMARK 900 COMPLEX OF A MG2-DEPENDENT PORPHOBILINOGEN SYNTHASE (MUTANT D139N)
REMARK 900 WITH 5-FLUOROLEVULINIC ACID
REMARK 900 RELATED ID: 2C19 RELATED DB: PDB
REMARK 900 5-(4-CARBOXY-2-OXO-BUTYLSULFANYL)-4-OXO- PENTANOIC ACID ACID BOUND
REMARK 900 TO PORPHOBILINOGEN SYNTHASE FROM PSEUDOMONAS AERUGINOSA
REMARK 900 RELATED ID: 1W5P RELATED DB: PDB
REMARK 900 STEPWISE INTRODUCTION OF ZINC BINDING SITE INTO PORPHOBILINOGEN
REMARK 900 SYNTHASE OF PSEUDOMONAS AERUGINOSA (MUTANTIONS A129C, D131C, D139C,
REMARK 900 P132E)
REMARK 900 RELATED ID: 2C13 RELATED DB: PDB
REMARK 900 5-HYDROXY-LEVULINIC ACID BOUND TO PORPHOBILINOGEN SYNTHASE FROM
REMARK 900 PSEUDOMONAS AERUGINOSA
REMARK 900 RELATED ID: 1W5N RELATED DB: PDB
REMARK 900 STEPWISE INTRODUCTION OF ZINC BINDING SITE INTO PORPHOBILINOGEN
REMARK 900 SYNTHASE OF PSEUDOMONAS AERUGINOSA (MUTANTIONS D131C AND D139C)
REMARK 900 RELATED ID: 1W5Q RELATED DB: PDB
REMARK 900 STEPWISE INTRODUCTION OF ZINC BINDING SITE INTO PORPHOBILINOGEN
REMARK 900 SYNTHASE OF PSEUDOMONAS AERUGINOSA (MUTANTIONS A129C, D131C, D139C,
REMARK 900 P132E, K229R)
REMARK 900 RELATED ID: 1W54 RELATED DB: PDB
REMARK 900 STEPWISE INTRODUCTION OF A ZINC BINDING SITE INTO PORPHOBILINOGEN
REMARK 900 SYNTHASE FROM PSEUDOMONAS AERUGINOSA (MUTATION D139C)
REMARK 900 RELATED ID: 1W5M RELATED DB: PDB
REMARK 900 STEPWISE INTRODUCTION OF ZINC BINDING SITE INTO PORPHOBILINOGEN
REMARK 900 SYNTHASE OF PSEUDOMONAS AERUGINOSA (MUTANTIONS A129C AND D139C)
REMARK 900 RELATED ID: 1W5O RELATED DB: PDB
REMARK 900 STEPWISE INTRODUCTION OF ZINC BINDING SITE INTO PORPHOBILINOGEN
REMARK 900 SYNTHASE OF PSEUDOMONAS AERUGINOSA (MUTANTIONS A129C, D131C AND
REMARK 900 D139C)
REMARK 900 RELATED ID: 1W56 RELATED DB: PDB
REMARK 900 STEPWISE INTRODUCTION OF ZINC BINDING SITE INTO PORPHOBILINOGEN
REMARK 900 SYNTHASE OF PSEUDOMONAS AERUGINOSA (MUTANTIONS A129C AND D131C)
REMARK 900 RELATED ID: 2C16 RELATED DB: PDB
REMARK 900 5-(4-CARBOXY-2-OXO-BUTANE-1-SULFINYL)-4 -OXO-PENTANOIC ACID ACID
REMARK 900 BOUND TO PORPHOBILINOGEN SYNTHASE FROM PSEUDOMONAS AERUGINOSA
REMARK 900 RELATED ID: 2C15 RELATED DB: PDB
REMARK 900 5-(4-CARBOXY-2-OXO-BUTOXY)-4-OXO- PENTANOIC ACID ACID BOUND TO
REMARK 900 PORPHOBILINOGEN SYNTHASE FROM PSEUDOMONAS AERUGINOSA
REMARK 900 RELATED ID: 1B4K RELATED DB: PDB
REMARK 900 HIGH RESOLUTION CRYSTAL STRUCTURE OF A MG2- DEPENDENT 5-
REMARK 900 AMINOLEVULINIC ACID DEHYDRATASE
DBREF 2WOQ A 1 337 UNP Q59643 HEM2_PSEAE 1 337
SEQRES 1 A 337 MET SER PHE THR PRO ALA ASN ARG ALA TYR PRO TYR THR
SEQRES 2 A 337 ARG LEU ARG ARG ASN ARG ARG ASP ASP PHE SER ARG ARG
SEQRES 3 A 337 LEU VAL ARG GLU ASN VAL LEU THR VAL ASP ASP LEU ILE
SEQRES 4 A 337 LEU PRO VAL PHE VAL LEU ASP GLY VAL ASN GLN ARG GLU
SEQRES 5 A 337 SER ILE PRO SER MET PRO GLY VAL GLU ARG LEU SER ILE
SEQRES 6 A 337 ASP GLN LEU LEU ILE GLU ALA GLU GLU TRP VAL ALA LEU
SEQRES 7 A 337 GLY ILE PRO ALA LEU ALA LEU PHE PRO VAL THR PRO VAL
SEQRES 8 A 337 GLU LYS LYS SER LEU ASP ALA ALA GLU ALA TYR ASN PRO
SEQRES 9 A 337 GLU GLY ILE ALA GLN ARG ALA THR ARG ALA LEU ARG GLU
SEQRES 10 A 337 ARG PHE PRO GLU LEU GLY ILE ILE THR ASP VAL ALA LEU
SEQRES 11 A 337 ASP PRO PHE THR THR HIS GLY GLN ASP GLY ILE LEU ASP
SEQRES 12 A 337 ASP ASP GLY TYR VAL LEU ASN ASP VAL SER ILE ASP VAL
SEQRES 13 A 337 LEU VAL ARG GLN ALA LEU SER HIS ALA GLU ALA GLY ALA
SEQRES 14 A 337 GLN VAL VAL ALA PRO SER ASP MET MET ASP GLY ARG ILE
SEQRES 15 A 337 GLY ALA ILE ARG GLU ALA LEU GLU SER ALA GLY HIS THR
SEQRES 16 A 337 ASN VAL ARG ILE MET ALA TYR SER ALA LYS TYR ALA SER
SEQRES 17 A 337 ALA TYR TYR GLY PRO PHE ARG ASP ALA VAL GLY SER ALA
SEQRES 18 A 337 SER ASN LEU GLY LYS GLY ASN LYS ALA THR TYR GLN MET
SEQRES 19 A 337 ASP PRO ALA ASN SER ASP GLU ALA LEU HIS GLU VAL ALA
SEQRES 20 A 337 ALA ASP LEU ALA GLU GLY ALA ASP MET VAL MET VAL LYS
SEQRES 21 A 337 PRO GLY MET PRO TYR LEU ASP ILE VAL ARG ARG VAL LYS
SEQRES 22 A 337 ASP GLU PHE ARG ALA PRO THR PHE VAL TYR GLN VAL SER
SEQRES 23 A 337 GLY GLU TYR ALA MET HIS MET GLY ALA ILE GLN ASN GLY
SEQRES 24 A 337 TRP LEU ALA GLU SER VAL ILE LEU GLU SER LEU THR ALA
SEQRES 25 A 337 PHE LYS ARG ALA GLY ALA ASP GLY ILE LEU THR TYR PHE
SEQRES 26 A 337 ALA LYS GLN ALA ALA GLU GLN LEU ARG ARG GLY ARG
HET AYC A1333 12
HET MG A1334 1
HET MG A1335 1
HET MG A1336 1
HET MG A1337 1
HET EPE A1338 9
HET EPE A1339 15
HET PE5 A1340 14
HET PE5 A1341 18
HET PE5 A1342 13
HET PE5 A1343 12
HETNAM AYC ALAREMYCIN 2
HETNAM MG MAGNESIUM ION
HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HETNAM PE5 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL
HETSYN AYC (5R)-5-ACETAMIDO-4-OXO-HEXANOIC ACID
HETSYN EPE HEPES
HETSYN PE5 2-(2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-
HETSYN 2 PE5 ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL; POLYETHYLENE
HETSYN 3 PE5 GLYCOL PEG400
FORMUL 2 AYC C8 H13 N O4
FORMUL 3 MG 4(MG 2+)
FORMUL 7 EPE 2(C8 H18 N2 O4 S)
FORMUL 9 PE5 4(C18 H38 O9)
FORMUL 13 HOH *176(H2 O)
HELIX 1 1 LEU A 15 ARG A 20 1 6
HELIX 2 2 ASP A 22 ARG A 29 1 8
HELIX 3 3 VAL A 35 ASP A 37 5 3
HELIX 4 4 ILE A 65 LEU A 78 1 14
HELIX 5 5 ALA A 99 ASN A 103 5 5
HELIX 6 6 ILE A 107 PHE A 119 1 13
HELIX 7 7 ASN A 150 ALA A 167 1 18
HELIX 8 8 ARG A 181 ALA A 192 1 12
HELIX 9 9 GLY A 212 VAL A 218 1 7
HELIX 10 10 ASN A 228 TYR A 232 5 5
HELIX 11 11 SER A 239 GLU A 252 1 14
HELIX 12 12 LEU A 266 PHE A 276 1 11
HELIX 13 13 GLY A 287 GLN A 297 1 11
HELIX 14 14 SER A 304 ALA A 316 1 13
HELIX 15 15 PHE A 325 GLN A 332 1 8
SHEET 1 AA 4 ARG A 51 SER A 53 0
SHEET 2 AA 4 GLU A 61 SER A 64 -1 O ARG A 62 N GLU A 52
SHEET 3 AA 4 ILE A 39 LEU A 45 1 O PHE A 43 N LEU A 63
SHEET 4 AA 4 ALA A 82 PRO A 87 1 O ALA A 82 N LEU A 40
SHEET 1 AB 6 ILE A 125 VAL A 128 0
SHEET 2 AB 6 VAL A 171 PRO A 174 1 O VAL A 171 N THR A 126
SHEET 3 AB 6 ARG A 198 LYS A 205 1 O ARG A 198 N VAL A 172
SHEET 4 AB 6 MET A 256 LYS A 260 1 O MET A 256 N ALA A 201
SHEET 5 AB 6 THR A 280 GLN A 284 1 O PHE A 281 N VAL A 259
SHEET 6 AB 6 LEU A 322 THR A 323 1 O LEU A 322 N GLN A 284
LINK NZ LYS A 260 CAU AYC A1333 1555 1555 1.29
LINK OD1 ASP A 37 MG MG A1337 1555 1555 2.11
LINK OD1 ASP A 131 MG MG A1336 1555 1555 2.05
LINK OD2 ASP A 139 MG MG A1336 1555 1555 1.97
LINK OE1 GLU A 245 MG MG A1335 1555 1555 1.97
LINK O ASP A 319 MG MG A1337 1555 1555 2.14
LINK MG MG A1334 O HOH A2025 1555 6555 2.12
LINK MG MG A1334 O HOH A2059 1555 1555 2.01
LINK MG MG A1334 O HOH A2167 1555 1555 1.92
LINK MG MG A1334 O HOH A2169 1555 1555 2.00
LINK MG MG A1335 O HOH A2107 1555 1555 2.05
LINK MG MG A1335 O HOH A2108 1555 1555 2.12
LINK MG MG A1335 O HOH A2137 1555 1555 2.12
LINK MG MG A1335 O HOH A2139 1555 1555 2.04
LINK MG MG A1335 O HOH A2140 1555 1555 2.16
LINK MG MG A1336 O HOH A2090 1555 1555 2.03
LINK MG MG A1336 O HOH A2105 1555 1555 1.94
LINK MG MG A1337 O HOH A2018 1555 6555 1.48
LINK MG MG A1337 O HOH A2022 1555 6555 1.82
LINK MG MG A1337 O HOH A2031 1555 1555 2.23
CISPEP 1 TYR A 10 PRO A 11 0 2.27
CISPEP 2 LYS A 260 PRO A 261 0 -8.22
SITE 1 AC1 13 ASP A 131 SER A 175 TYR A 202 LYS A 205
SITE 2 AC1 13 TYR A 211 PHE A 214 LYS A 260 TYR A 283
SITE 3 AC1 13 VAL A 285 SER A 286 TYR A 324 HOH A2085
SITE 4 AC1 13 HOH A2173
SITE 1 AC2 4 HOH A2025 HOH A2059 HOH A2167 HOH A2169
SITE 1 AC3 6 GLU A 245 HOH A2107 HOH A2108 HOH A2137
SITE 2 AC3 6 HOH A2139 HOH A2140
SITE 1 AC4 5 ASP A 131 ASP A 139 ASP A 176 HOH A2090
SITE 2 AC4 5 HOH A2105
SITE 1 AC5 6 LEU A 27 ASP A 37 ASP A 319 HOH A2018
SITE 2 AC5 6 HOH A2022 HOH A2031
SITE 1 AC6 4 GLU A 30 ASN A 31 VAL A 32 HOH A2174
SITE 1 AC7 7 ARG A 20 TYR A 147 GLY A 193 THR A 195
SITE 2 AC7 7 ASN A 196 HOH A2092 HOH A2118
SITE 1 AC8 3 TYR A 10 TYR A 12 GLU A 190
SITE 1 AC9 3 ILE A 141 PE5 A1342 HOH A2176
SITE 1 BC1 6 ASP A 97 VAL A 152 ASP A 155 PE5 A1341
SITE 2 BC1 6 HOH A2175 HOH A2176
SITE 1 BC2 8 ALA A 99 TYR A 102 ASN A 103 PRO A 104
SITE 2 BC2 8 ASP A 155 VAL A 158 ARG A 159 HOH A2065
CRYST1 84.444 84.444 158.528 90.00 90.00 90.00 I 4 2 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011842 0.000000 0.000000 0.00000
SCALE2 0.000000 0.011842 0.000000 0.00000
SCALE3 0.000000 0.000000 0.006308 0.00000