HEADER TRANSCRIPTION 12-AUG-09 2WPY TITLE GCN4 LEUCINE ZIPPER MUTANT WITH ONE VXXNXXX MOTIF COORDINATING TITLE 2 CHLORIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENERAL CONTROL PROTEIN GCN4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: COILED-COIL DOMAIN, RESIDUES 249-281; COMPND 5 SYNONYM: AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN, GCN4 LEUCINE COMPND 6 ZIPPER MUTANT; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 OTHER_DETAILS: N-TERMINAL ACETYL GROUP SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 4932 KEYWDS AMINO-ACID BIOSYNTHESIS, TRANSCRIPTION REGULATION, ION COORDINATION, KEYWDS 2 POLAR CORE RESIDUES, TRANSCRIPTION, PROTEIN EXPORT, PHOSPHOPROTEIN, KEYWDS 3 TAA, NUCLEUS, ACTIVATOR, DNA-BINDING, TRIMERIC AUTOTRANSPORTER KEYWDS 4 ADHESIN EXPDTA X-RAY DIFFRACTION AUTHOR K.ZETH,M.D.HARTMANN,R.ALBRECHT,A.N.LUPAS,B.HERNANDEZ ALVAREZ REVDAT 3 20-DEC-23 2WPY 1 REMARK LINK REVDAT 2 13-JUL-11 2WPY 1 VERSN REVDAT 1 03-NOV-09 2WPY 0 JRNL AUTH M.D.HARTMANN,O.RIDDERBUSCH,K.ZETH,R.ALBRECHT,O.TESTA, JRNL AUTH 2 D.N.WOOLFSON,G.SAUER,S.DUNIN-HORKAWICZ,A.N.LUPAS,B.H.ALVAREZ JRNL TITL A COILED-COIL MOTIF THAT SEQUESTERS IONS TO THE HYDROPHOBIC JRNL TITL 2 CORE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 16950 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19805097 JRNL DOI 10.1073/PNAS.0907256106 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 3292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 REMARK 3 FREE R VALUE TEST SET COUNT : 248 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 231 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 18 REMARK 3 BIN FREE R VALUE : 0.3200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 267 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 19 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 50.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.55000 REMARK 3 B22 (A**2) : 1.55000 REMARK 3 B33 (A**2) : -2.32000 REMARK 3 B12 (A**2) : 0.77000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.288 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 270 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 196 ; 0.037 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 358 ; 1.603 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): 483 ; 1.414 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 31 ; 4.362 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 13 ;34.107 ;25.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 63 ;15.509 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ; 9.929 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 41 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 277 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 45 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 162 ; 3.364 ; 6.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 65 ; 2.967 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 260 ; 5.661 ; 9.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 108 ; 7.656 ;12.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 98 ;12.639 ;18.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): -11.5710 9.8810 -4.4820 REMARK 3 T TENSOR REMARK 3 T11: 0.0249 T22: 0.0532 REMARK 3 T33: 0.0385 T12: -0.0100 REMARK 3 T13: 0.0064 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.1005 L22: 0.7316 REMARK 3 L33: 6.2636 L12: 0.2340 REMARK 3 L13: -0.1576 L23: -1.1794 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: 0.0405 S13: -0.0375 REMARK 3 S21: 0.0333 S22: 0.0397 S23: -0.0466 REMARK 3 S31: -0.0736 S32: 0.1782 S33: -0.0474 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1290040734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3548 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GCM REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.2 M NACL, 100 MM NA-ACETATE, PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -16.66500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 28.86463 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -33.33000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A1033 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A1034 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 264 TO VAL REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 267 TO ASN REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 32 CD OE1 OE2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1033 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1034 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RB5 RELATED DB: PDB REMARK 900 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A REMARK 900 TRIGONAL FORM REMARK 900 RELATED ID: 1GCM RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER CORE MUTANT P-LI REMARK 900 RELATED ID: 1UNT RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1LLM RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A ZIF23-GCN4 CHIMERA BOUND TO DNA REMARK 900 RELATED ID: 2ZTA RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER REMARK 900 RELATED ID: 1UNW RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO2 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 2CCF RELATED DB: PDB REMARK 900 ANTIPARALLEL CONFIGURATION OF PLI E20S REMARK 900 RELATED ID: 1CE9 RELATED DB: PDB REMARK 900 HELIX CAPPING IN THE GCN4 LEUCINE ZIPPER REMARK 900 RELATED ID: 2WG6 RELATED DB: PDB REMARK 900 PROTEASOME-ACTIVATING NUCLEOTIDASE (PAN) N- DOMAIN (57-134) FROM REMARK 900 ARCHAEOGLOBUS FULGIDUS FUSED TO GCN4, P61A MUTANT REMARK 900 RELATED ID: 1TMZ RELATED DB: PDB REMARK 900 TMZIP: A CHIMERIC PEPTIDE MODEL OF THE N- TERMINUS OF ALPHA REMARK 900 TROPOMYOSIN, NMR, 15 STRUCTURES REMARK 900 RELATED ID: 1ZIL RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE DIMERIC STATE REMARK 900 RELATED ID: 2CCN RELATED DB: PDB REMARK 900 PLI E20C IS ANTIPARALLEL REMARK 900 RELATED ID: 1W5L RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL TO PARALLEL SWITCH. REMARK 900 RELATED ID: 1RB6 RELATED DB: PDB REMARK 900 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A REMARK 900 TETRAGONAL FORM REMARK 900 RELATED ID: 1ZIJ RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE TRIMERIC STATE REMARK 900 RELATED ID: 1UNZ RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1W5K RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE REMARK 900 RELATED ID: 1PIQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF GCN4-PIQ, A TRIMERIC COILED COIL WITH BURIED REMARK 900 POLAR RESIDUES REMARK 900 RELATED ID: 1UNX RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UNY RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1ZIK RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16LYS IN THE DIMERIC STATE REMARK 900 RELATED ID: 1YSA RELATED DB: PDB REMARK 900 GCN4 (BASIC REGION, LEUCINE ZIPPER) COMPLEX WITH AP-1 REMARK 900 DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1W5H RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE. REMARK 900 RELATED ID: 1IJ2 RELATED DB: PDB REMARK 900 GCN4-PVTL COILED-COIL TRIMER WITH THREONINE AT THE A(16)POSITION REMARK 900 RELATED ID: 1UNV RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1UO3 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 2CCE RELATED DB: PDB REMARK 900 PARALLEL CONFIGURATION OF PLI E20S REMARK 900 RELATED ID: 1IJ0 RELATED DB: PDB REMARK 900 COILED COIL TRIMER GCN4-PVLS SER AT BURIED D POSITION REMARK 900 RELATED ID: 1W5G RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE ( ACETIMIDE MODIFICATION). REMARK 900 RELATED ID: 1UNU RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 2B22 RELATED DB: PDB REMARK 900 ANTIPARALLEL FOUR-STRANDED COILED COIL SPECIFIED BY A 3-3- REMARK 900 1HYDROPHOBIC HEPTAD REPEAT REMARK 900 RELATED ID: 1LD4 RELATED DB: PDB REMARK 900 PLACEMENT OF THE STRUCTURAL PROTEINS IN SINDBIS VIRUS REMARK 900 RELATED ID: 2B1F RELATED DB: PDB REMARK 900 ANTIPARALLEL FOUR-STRANDED COILED COIL SPECIFIED BY A 3-3- REMARK 900 1HYDROPHOBIC HEPTAD REPEAT REMARK 900 RELATED ID: 1UO0 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 2WG5 RELATED DB: PDB REMARK 900 PROTEASOME-ACTIVATING NUCLEOTIDASE (PAN) N- DOMAIN (57-134) FROM REMARK 900 ARCHAEOGLOBUS FULGIDUS FUSED TO GCN4 REMARK 900 RELATED ID: 1UO1 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1SWI RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A COMPLEXED WITH BENZENE REMARK 900 RELATED ID: 1W5I RELATED DB: PDB REMARK 900 ABA DOES NOT AFFECT TOPOLOGY OF PLI. REMARK 900 RELATED ID: 2DGC RELATED DB: PDB REMARK 900 GCN4 BASIC DOMAIN, LEUCINE ZIPPER COMPLEXED WITH ATF/CREB SITE REMARK 900 DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1NKN RELATED DB: PDB REMARK 900 VISUALIZING AN UNSTABLE COILED COIL: THE CRYSTAL STRUCTUREOF AN N- REMARK 900 TERMINAL SEGMENT OF THE SCALLOP MYOSIN ROD REMARK 900 RELATED ID: 2D3E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL FRAGMENT OF RABBITSKELETAL REMARK 900 ALPHA-TROPOMYOSIN REMARK 900 RELATED ID: 1GCL RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER CORE MUTANT P-LI REMARK 900 RELATED ID: 1ZII RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16ABA IN THE DIMERIC STATE REMARK 900 RELATED ID: 1KQL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL REGION OF STRIATEDMUSCLE ALPHA- REMARK 900 TROPOMYOSIN AT 2.7 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1UO5 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1RB4 RELATED DB: PDB REMARK 900 ANTIPARALLEL TRIMER OF GCN4-LEUCINE ZIPPER CORE MUTANT ASN16A REMARK 900 TETRAGONAL AUTOMATIC SOLUTION REMARK 900 RELATED ID: 1IHQ RELATED DB: PDB REMARK 900 GLYTM1BZIP: A CHIMERIC PEPTIDE MODEL OF THE N-TERMINUS OF ARAT REMARK 900 SHORT ALPHA TROPOMYOSIN WITH THE N-TERMINUS ENCODED BYEXON 1B REMARK 900 RELATED ID: 1UO4 RELATED DB: PDB REMARK 900 STRUCTURE BASED ENGINEERING OF INTERNAL MOLECULAR SURFACES OF FOUR REMARK 900 HELIX BUNDLES REMARK 900 RELATED ID: 1IJ3 RELATED DB: PDB REMARK 900 GCN4-PVSL COILED-COIL TRIMER WITH SERINE AT THE A(16)POSITION REMARK 900 RELATED ID: 1ZTA RELATED DB: PDB REMARK 900 LEUCINE ZIPPER MONOMER (NMR, 20 STRUCTURES) REMARK 900 RELATED ID: 1W5J RELATED DB: PDB REMARK 900 AN ANTI-PARALLEL FOUR HELIX BUNDLE REMARK 900 RELATED ID: 1IJ1 RELATED DB: PDB REMARK 900 GCN4-PVLT COILED-COIL TRIMER WITH THREONINE AT THE D(12)POSITION REMARK 900 RELATED ID: 1DGC RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER COMPLEXED WITH SPECIFIC ATF/CREB SITE REMARK 900 DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1RB1 RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT AS N16A TRIGONAL AUTOMATICSOLUTION REMARK 900 RELATED ID: 1ZIM RELATED DB: PDB REMARK 900 GCN4-LEUCINE ZIPPER CORE MUTANT ASN16GLN IN THE TRIMERIC STATE REMARK 900 RELATED ID: 1GZL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF C14LINKMID/IQN17: A CROSS-LINKED INHIBITOR OF REMARK 900 HIV-1 ENTRY BOUND TO THE GP41 HYDROPHOBIC POCKET REMARK 900 RELATED ID: 2BNI RELATED DB: PDB REMARK 900 PLI MUTANT E20C L16G Y17H, ANTIPARALLEL REMARK 900 RELATED ID: 2WPS RELATED DB: PDB REMARK 900 SALMONELLA ENTERICA SADA 483-523 FUSED TO GCN4 ADAPTORS (SADAK3B-V2, REMARK 900 OUT-OF-REGISTER FUSION) REMARK 900 RELATED ID: 2WPZ RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER MUTANT WITH TWO VXXNXXX MOTIFS COORDINATING REMARK 900 CHLORIDE REMARK 900 RELATED ID: 2WQ0 RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER MUTANT WITH THREE IXXNTXX MOTIFS COORDINATING REMARK 900 CHLORIDE REMARK 900 RELATED ID: 2WQ3 RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER MUTANT WITH THREE IXXNTXX MOTIFS COORDINATING REMARK 900 CHLORIDE AND NITRATE REMARK 900 RELATED ID: 2WPQ RELATED DB: PDB REMARK 900 SALMONELLA ENTERICA SADA 479-519 FUSED TO GCN4 ADAPTORS (SADAK3, IN- REMARK 900 REGISTER FUSION) REMARK 900 RELATED ID: 2WQ1 RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER MUTANT WITH THREE IXXNTXX MOTIFS COORDINATING REMARK 900 BROMIDE REMARK 900 RELATED ID: 2WQ2 RELATED DB: PDB REMARK 900 GCN4 LEUCINE ZIPPER MUTANT WITH THREE IXXNTXX MOTIFS COORDINATING REMARK 900 IODIDE REMARK 900 RELATED ID: 2WPR RELATED DB: PDB REMARK 900 SALMONELLA ENTERICA SADA 483-523 FUSED TO GCN4 ADAPTORS (SADAK3B-V1, REMARK 900 OUT-OF-REGISTER FUSION) DBREF 2WPY A 0 0 PDB 2WPY 2WPY 0 0 DBREF 2WPY A 1 33 UNP P03069 GCN4_YEAST 249 281 SEQADV 2WPY VAL A 16 UNP P03069 ASN 264 ENGINEERED MUTATION SEQADV 2WPY ASN A 19 UNP P03069 LEU 267 ENGINEERED MUTATION SEQRES 1 A 34 ACE ARG MET LYS GLN LEU GLU ASP LYS VAL GLU GLU LEU SEQRES 2 A 34 LEU SER LYS VAL TYR HIS ASN GLU ASN GLU VAL ALA ARG SEQRES 3 A 34 LEU LYS LYS LEU VAL GLY GLU ARG HET ACE A 0 3 HET CL A1033 1 HET CL A1034 1 HETNAM ACE ACETYL GROUP HETNAM CL CHLORIDE ION FORMUL 1 ACE C2 H4 O FORMUL 2 CL 2(CL 1-) FORMUL 4 HOH *19(H2 O) HELIX 1 1 ARG A 1 VAL A 30 1 30 LINK C ACE A 0 N ARG A 1 1555 1555 1.33 SITE 1 AC1 1 ASN A 19 SITE 1 AC2 1 LYS A 8 CRYST1 33.330 33.330 50.820 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030003 0.017322 0.000000 0.00000 SCALE2 0.000000 0.034644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019677 0.00000 HETATM 1 C ACE A 0 -12.751 2.121 16.514 1.00 49.49 C HETATM 2 O ACE A 0 -12.042 2.237 15.497 1.00 45.27 O HETATM 3 CH3 ACE A 0 -12.224 1.649 17.851 1.00 47.93 C