HEADER HYDROLASE 02-SEP-09 2WRS TITLE CRYSTAL STRUCTURE OF THE MONO-ZINC METALLO-BETA-LACTAMASE VIM-4 FROM TITLE 2 PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE VIM-4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 32-261; COMPND 5 SYNONYM: METALLO-BETA-LACTAMASE, METALLO-BETA-LACTAMASE VIM-4, VIM-4, COMPND 6 VIM-4 METALLO-BETA-LACTAMASE; COMPND 7 EC: 3.5.2.6; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET9A-VIM-4 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.LASSAUX,M.HAMEL,M.GULEA,H.DELBRUCK,D.A.K.TRAORE,P.S.MERCURI, AUTHOR 2 L.HORSFALL,D.DEHARENG,A.-C.GAUMONT,J.-M.FRERE,J.-L.FERRER, AUTHOR 3 K.HOFFMANN,M.GALLENI,C.BEBRONE REVDAT 3 20-DEC-23 2WRS 1 REMARK LINK REVDAT 2 30-JAN-13 2WRS 1 AUTHOR JRNL REMARK VERSN REVDAT 1 23-JUN-10 2WRS 0 JRNL AUTH P.LASSAUX,M.HAMEL,M.GULEA,H.DELBRUCK,P.S.MERCURI,L.HORSFALL, JRNL AUTH 2 D.DEHARENG,M.KUPPER,J.-M.FRERE,K.HOFFMANN,M.GALLENI, JRNL AUTH 3 C.BEBRONE JRNL TITL MERCAPTOPHOSPHONATE COMPOUNDS AS BROAD-SPECTRUM INHIBITORS JRNL TITL 2 OF THE METALLO-BETA-LACTAMASES. JRNL REF J.MED.CHEM. V. 53 4862 2010 JRNL REFN ISSN 0022-2623 JRNL PMID 20527888 JRNL DOI 10.1021/JM100213C REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 15312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 806 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1037 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3454 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.57000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.346 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.267 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.864 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3594 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 10 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4923 ; 1.794 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 22 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 7.412 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;39.338 ;24.140 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 513 ;20.277 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.373 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 557 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2813 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2292 ; 1.162 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3687 ; 2.090 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1302 ; 2.486 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1236 ; 4.115 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3604 ; 1.629 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 29 ; 6.572 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3527 ; 2.361 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 2WRS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1290041007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16118 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WHG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.55 M AMMONIUM CITRATE TRIBASIC PH REMARK 280 7.0 POWDER OF COMPOUND 18 IN THE DROP. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.06500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.83500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.06500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.83500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 198 OG1 FLC B 1263 1.87 REMARK 500 NE2 HIS B 240 OG1 FLC B 1263 2.08 REMARK 500 SG CYS A 198 OB1 FLC A 1263 2.13 REMARK 500 OD2 ASP A 118 OB1 FLC A 1263 2.19 REMARK 500 NE2 HIS A 240 OB1 FLC A 1263 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 143.64 79.01 REMARK 500 TRP A 87 64.77 69.99 REMARK 500 ALA A 178 -100.85 -141.14 REMARK 500 ALA A 191 -9.36 -156.81 REMARK 500 ASP B 84 140.69 86.89 REMARK 500 TRP B 87 89.44 70.41 REMARK 500 HIS B 114 -177.51 -175.72 REMARK 500 ALA B 178 -113.78 -135.02 REMARK 500 ILE B 226 -76.53 -81.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1262 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 114 NE2 REMARK 620 2 HIS A 116 ND1 91.6 REMARK 620 3 HIS A 179 NE2 90.8 104.6 REMARK 620 4 FLC A1263 OB2 102.4 139.2 113.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1262 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 ND1 REMARK 620 2 HIS B 179 NE2 97.4 REMARK 620 3 FLC B1263 OG2 145.6 113.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC B 1263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 1263 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1264 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 1265 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WHG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE DI-ZINC METALLO- BETA-LACTAMASE VIM-4 FROM REMARK 900 PSEUDOMONAS AERUGINOSA DBREF 2WRS A 32 261 UNP Q70E11 Q70E11_PSEAE 32 261 DBREF 2WRS B 32 261 UNP Q70E11 Q70E11_PSEAE 32 261 SEQRES 1 A 230 GLU TYR PRO THR VAL ASN GLU ILE PRO VAL GLY GLU VAL SEQRES 2 A 230 ARG LEU TYR GLN ILE ALA ASP GLY VAL TRP SER HIS ILE SEQRES 3 A 230 ALA THR GLN SER PHE ASP GLY ALA VAL TYR PRO SER ASN SEQRES 4 A 230 GLY LEU ILE VAL ARG ASP GLY ASP GLU LEU LEU LEU ILE SEQRES 5 A 230 ASP THR ALA TRP GLY ALA LYS ASN THR ALA ALA LEU LEU SEQRES 6 A 230 ALA GLU ILE GLU LYS GLN ILE GLY LEU PRO VAL THR ARG SEQRES 7 A 230 ALA VAL SER THR HIS PHE HIS ASP ASP ARG VAL GLY GLY SEQRES 8 A 230 VAL ASP VAL LEU ARG ALA ALA GLY VAL ALA THR TYR ALA SEQRES 9 A 230 SER PRO SER THR ARG ARG LEU ALA GLU ALA GLU GLY ASN SEQRES 10 A 230 GLU ILE PRO THR HIS SER LEU GLU GLY LEU SER SER SER SEQRES 11 A 230 GLY ASP ALA VAL ARG PHE GLY PRO VAL GLU LEU PHE TYR SEQRES 12 A 230 PRO GLY ALA ALA HIS SER THR ASP ASN LEU VAL VAL TYR SEQRES 13 A 230 VAL PRO SER ALA ASN VAL LEU TYR GLY GLY CYS ALA VAL SEQRES 14 A 230 HIS GLU LEU SER ARG THR SER ALA GLY ASN VAL ALA ASP SEQRES 15 A 230 ALA ASP LEU ALA GLU TRP PRO THR SER VAL GLU ARG ILE SEQRES 16 A 230 GLN LYS HIS TYR PRO GLU ALA GLU VAL VAL ILE PRO GLY SEQRES 17 A 230 HIS GLY LEU PRO GLY GLY LEU ASP LEU LEU GLN HIS THR SEQRES 18 A 230 ALA ASN VAL VAL LYS ALA HIS LYS ASN SEQRES 1 B 230 GLU TYR PRO THR VAL ASN GLU ILE PRO VAL GLY GLU VAL SEQRES 2 B 230 ARG LEU TYR GLN ILE ALA ASP GLY VAL TRP SER HIS ILE SEQRES 3 B 230 ALA THR GLN SER PHE ASP GLY ALA VAL TYR PRO SER ASN SEQRES 4 B 230 GLY LEU ILE VAL ARG ASP GLY ASP GLU LEU LEU LEU ILE SEQRES 5 B 230 ASP THR ALA TRP GLY ALA LYS ASN THR ALA ALA LEU LEU SEQRES 6 B 230 ALA GLU ILE GLU LYS GLN ILE GLY LEU PRO VAL THR ARG SEQRES 7 B 230 ALA VAL SER THR HIS PHE HIS ASP ASP ARG VAL GLY GLY SEQRES 8 B 230 VAL ASP VAL LEU ARG ALA ALA GLY VAL ALA THR TYR ALA SEQRES 9 B 230 SER PRO SER THR ARG ARG LEU ALA GLU ALA GLU GLY ASN SEQRES 10 B 230 GLU ILE PRO THR HIS SER LEU GLU GLY LEU SER SER SER SEQRES 11 B 230 GLY ASP ALA VAL ARG PHE GLY PRO VAL GLU LEU PHE TYR SEQRES 12 B 230 PRO GLY ALA ALA HIS SER THR ASP ASN LEU VAL VAL TYR SEQRES 13 B 230 VAL PRO SER ALA ASN VAL LEU TYR GLY GLY CYS ALA VAL SEQRES 14 B 230 HIS GLU LEU SER ARG THR SER ALA GLY ASN VAL ALA ASP SEQRES 15 B 230 ALA ASP LEU ALA GLU TRP PRO THR SER VAL GLU ARG ILE SEQRES 16 B 230 GLN LYS HIS TYR PRO GLU ALA GLU VAL VAL ILE PRO GLY SEQRES 17 B 230 HIS GLY LEU PRO GLY GLY LEU ASP LEU LEU GLN HIS THR SEQRES 18 B 230 ALA ASN VAL VAL LYS ALA HIS LYS ASN HET ZN A1262 1 HET FLC A1263 13 HET CIT A1264 13 HET CIT A1265 13 HET ZN B1262 1 HET FLC B1263 13 HETNAM ZN ZINC ION HETNAM FLC CITRATE ANION HETNAM CIT CITRIC ACID FORMUL 3 ZN 2(ZN 2+) FORMUL 4 FLC 2(C6 H5 O7 3-) FORMUL 5 CIT 2(C6 H8 O7) FORMUL 9 HOH *27(H2 O) HELIX 1 1 THR A 35 ILE A 39 5 5 HELIX 2 2 ALA A 89 ILE A 103 1 15 HELIX 3 3 VAL A 123 ALA A 129 1 7 HELIX 4 4 SER A 136 GLU A 146 1 11 HELIX 5 5 GLU A 218 TYR A 230 1 13 HELIX 6 6 LEU A 246 LYS A 260 1 15 HELIX 7 7 THR B 35 ILE B 39 5 5 HELIX 8 8 ALA B 89 ILE B 103 1 15 HELIX 9 9 VAL B 123 ALA B 128 1 6 HELIX 10 10 SER B 136 GLU B 146 1 11 HELIX 11 11 GLU B 218 TYR B 230 1 13 HELIX 12 12 LEU B 246 HIS B 259 1 14 SHEET 1 AA 3 ARG A 45 GLN A 48 0 SHEET 2 AA 3 TRP A 54 SER A 61 -1 O SER A 55 N TYR A 47 SHEET 3 AA 3 VAL A 66 SER A 69 -1 O TYR A 67 N GLN A 60 SHEET 1 AB 5 ILE A 73 ARG A 75 0 SHEET 2 AB 5 LEU A 80 ILE A 83 -1 O LEU A 81 N VAL A 74 SHEET 3 AB 5 VAL A 107 VAL A 111 1 N THR A 108 O LEU A 80 SHEET 4 AB 5 ALA A 132 ALA A 135 1 O ALA A 132 N ALA A 110 SHEET 5 AB 5 HIS A 153 SER A 154 1 O HIS A 153 N ALA A 135 SHEET 1 AC 5 ALA A 164 ARG A 166 0 SHEET 2 AC 5 GLU A 171 PHE A 173 -1 O LEU A 172 N VAL A 165 SHEET 3 AC 5 VAL A 185 TYR A 187 -1 O VAL A 185 N PHE A 173 SHEET 4 AC 5 VAL A 193 TYR A 195 -1 O TYR A 195 N VAL A 186 SHEET 5 AC 5 VAL A 235 VAL A 236 1 O VAL A 235 N LEU A 194 SHEET 1 BA 3 VAL B 44 GLN B 48 0 SHEET 2 BA 3 TRP B 54 SER B 61 -1 O SER B 55 N TYR B 47 SHEET 3 BA 3 VAL B 66 SER B 69 -1 O TYR B 67 N GLN B 60 SHEET 1 BB 5 ILE B 73 ARG B 75 0 SHEET 2 BB 5 LEU B 80 ILE B 83 -1 O LEU B 81 N VAL B 74 SHEET 3 BB 5 VAL B 107 VAL B 111 1 N THR B 108 O LEU B 80 SHEET 4 BB 5 ALA B 132 ALA B 135 1 O ALA B 132 N ALA B 110 SHEET 5 BB 5 HIS B 153 SER B 154 1 O HIS B 153 N ALA B 135 SHEET 1 BC 5 ALA B 164 ARG B 166 0 SHEET 2 BC 5 GLU B 171 PHE B 173 -1 O LEU B 172 N VAL B 165 SHEET 3 BC 5 VAL B 185 TYR B 187 -1 O VAL B 185 N PHE B 173 SHEET 4 BC 5 VAL B 193 TYR B 195 -1 O TYR B 195 N VAL B 186 SHEET 5 BC 5 VAL B 235 VAL B 236 1 O VAL B 235 N LEU B 194 LINK NE2 HIS A 114 ZN ZN A1262 1555 1555 2.26 LINK ND1 HIS A 116 ZN ZN A1262 1555 1555 2.06 LINK NE2 HIS A 179 ZN ZN A1262 1555 1555 2.14 LINK ZN ZN A1262 OB2 FLC A1263 1555 1555 2.22 LINK ND1 HIS B 116 ZN ZN B1262 1555 1555 1.90 LINK NE2 HIS B 179 ZN ZN B1262 1555 1555 2.34 LINK ZN ZN B1262 OG2 FLC B1263 1555 1555 2.15 SITE 1 AC1 4 HIS A 114 HIS A 116 HIS A 179 FLC A1263 SITE 1 AC2 4 HIS B 114 HIS B 116 HIS B 179 FLC B1263 SITE 1 AC3 9 PHE B 62 HIS B 114 HIS B 116 ASP B 118 SITE 2 AC3 9 HIS B 179 CYS B 198 ASN B 210 HIS B 240 SITE 3 AC3 9 ZN B1262 SITE 1 AC4 12 PHE A 62 HIS A 114 ASP A 118 HIS A 179 SITE 2 AC4 12 CYS A 198 ARG A 205 GLY A 209 ASN A 210 SITE 3 AC4 12 HIS A 240 ZN A1262 HOH A2025 HOH A2026 SITE 1 AC5 4 ARG A 109 ARG A 166 PHE A 167 GLY A 168 SITE 1 AC6 6 ARG A 127 GLY A 130 VAL A 131 THR A 133 SITE 2 AC6 6 THR A 152 HIS A 153 CRYST1 140.130 45.670 105.030 90.00 105.41 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007136 0.000000 0.001967 0.00000 SCALE2 0.000000 0.021896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009876 0.00000