HEADER TRANSFERASE 03-SEP-09 2WS2 TITLE THE 2 ANGSTROM STRUCTURE OF A NU-CLASS GST FROM HAEMONCHUS CONTORTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NU-CLASS GST; COMPND 5 EC: 2.5.1.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMONCHUS CONTORTUS; SOURCE 3 ORGANISM_TAXID: 6289; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET23D KEYWDS PARASITE, NEMATODE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.LINE,M.N.ISUPOV,A.J.VANROSSUM,P.M.BROPHY,J.A.LITTLECHILD REVDAT 2 20-DEC-23 2WS2 1 REMARK REVDAT 1 29-SEP-10 2WS2 0 JRNL AUTH K.LINE,M.N.ISUPOV,A.J.VANROSSUM,P.M.BROPHY,J.A.LITTLECHILD JRNL TITL THE 2 ANGSTROM STRUCTURE OF A NU-CLASS GST FROM HAEMONCHUS JRNL TITL 2 CONTORTUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 26940 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1383 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.01 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1863 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3323 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -26.41000 REMARK 3 B22 (A**2) : 35.27000 REMARK 3 B33 (A**2) : -8.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.617 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3435 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4642 ; 1.891 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 411 ; 8.466 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;36.236 ;23.841 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 608 ;22.104 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;17.254 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 488 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2621 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2044 ; 0.943 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3295 ; 1.533 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1391 ; 2.303 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1344 ; 2.864 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H,K,L REMARK 3 TWIN FRACTION : 0.599 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : L,-K,H REMARK 3 TWIN FRACTION : 0.401 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): 18.3710 3.4550 11.4510 REMARK 3 T TENSOR REMARK 3 T11: 0.3503 T22: 0.0446 REMARK 3 T33: 0.4213 T12: -0.0331 REMARK 3 T13: 0.0315 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 11.0809 L22: 0.2910 REMARK 3 L33: 8.4257 L12: 0.1284 REMARK 3 L13: 2.2782 L23: 0.9022 REMARK 3 S TENSOR REMARK 3 S11: 0.1278 S12: 0.0927 S13: -0.0198 REMARK 3 S21: -0.1346 S22: -0.0224 S23: 0.1510 REMARK 3 S31: 0.1141 S32: -0.4814 S33: -0.1054 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 81 B 100 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5830 17.3670 16.1480 REMARK 3 T TENSOR REMARK 3 T11: 0.3425 T22: 0.1104 REMARK 3 T33: 0.3561 T12: 0.0379 REMARK 3 T13: 0.0397 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 2.2979 L22: 3.8618 REMARK 3 L33: 6.9863 L12: -1.5332 REMARK 3 L13: 0.6953 L23: -2.4565 REMARK 3 S TENSOR REMARK 3 S11: 0.3349 S12: 0.3476 S13: -0.2692 REMARK 3 S21: 0.0047 S22: 0.0912 S23: 0.3233 REMARK 3 S31: -0.0874 S32: -0.1962 S33: -0.4260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. TLS AND TWIN REFINEMENT USED. ATOM RECORD CONTAINS REMARK 3 SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF REMARK 3 TLS AND RESIDUAL U FACTORS. REMARK 4 REMARK 4 2WS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1290041022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28361 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 14.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 4.690 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 124.3900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1TW9 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS HCL, PH 8.5, 50 MM CACL2, REMARK 280 30% (W/V) PEG 10000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.69100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2009 O HOH A 2016 1.61 REMARK 500 O HOH A 2012 O HOH A 2013 1.70 REMARK 500 O HOH B 2013 O HOH B 2044 1.70 REMARK 500 O HOH B 2019 O HOH B 2022 1.87 REMARK 500 O PRO B 104 O HOH B 2067 1.90 REMARK 500 CB HIS A 42 O HOH A 2017 1.96 REMARK 500 O HOH B 2018 O HOH B 2056 2.04 REMARK 500 O MET B 163 N PHE B 165 2.07 REMARK 500 OD2 ASP B 157 O HOH B 2086 2.09 REMARK 500 NE2 HIS A 42 O HOH A 2019 2.10 REMARK 500 O HOH B 2014 O HOH B 2015 2.10 REMARK 500 O GLY A 175 O HOH A 2070 2.17 REMARK 500 OE1 GLU B 55 O HOH B 2042 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 2008 O HOH B 2072 1655 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 47 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP A 93 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 PRO B 47 C - N - CA ANGL. DEV. = 11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 12 -78.79 -87.24 REMARK 500 ASP A 57 53.64 17.46 REMARK 500 GLN A 63 126.82 88.83 REMARK 500 VAL A 108 2.03 -51.65 REMARK 500 LEU A 110 -144.43 -67.49 REMARK 500 MET A 112 -81.92 176.41 REMARK 500 GLN A 114 67.02 -116.07 REMARK 500 VAL A 124 -64.73 -125.85 REMARK 500 LYS A 144 17.38 50.28 REMARK 500 ASP A 151 33.11 -148.03 REMARK 500 MET A 163 7.38 -64.55 REMARK 500 THR A 166 41.06 -107.80 REMARK 500 GLU A 167 8.26 -65.23 REMARK 500 LYS A 171 33.24 -94.63 REMARK 500 TYR A 173 55.89 -101.84 REMARK 500 ASP A 174 -77.61 -59.80 REMARK 500 GLN B 63 102.31 83.71 REMARK 500 PHE B 106 85.05 -55.10 REMARK 500 VAL B 108 -143.03 33.54 REMARK 500 LEU B 110 21.41 -76.59 REMARK 500 ASP B 113 -70.59 -24.02 REMARK 500 GLN B 114 80.13 -49.08 REMARK 500 LYS B 118 30.95 176.93 REMARK 500 VAL B 124 -55.61 -122.70 REMARK 500 THR B 145 -3.38 -140.61 REMARK 500 GLU B 167 21.75 44.43 REMARK 500 TYR B 169 104.44 -162.12 REMARK 500 LEU B 172 149.87 -37.40 REMARK 500 ARG B 187 33.48 -75.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 116 LEU B 117 -144.83 REMARK 500 GLY B 164 PHE B 165 -149.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2011 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH B2022 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B2023 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B2048 DISTANCE = 7.14 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE CONFLICTS BETWEEN SEQUENCE MODELLED IN THE REMARK 999 STRUCTURE AND THE SEQUENCE DEPOSITED. WE HAVE MODELLED REMARK 999 OUR SEQUENCE BASED ON THE DENSITY OBSERVED DBREF 2WS2 A 1 164 UNP Q9NAW7 Q9NAW7_HAECO 1 164 DBREF 2WS2 A 165 204 UNP Q9NAW7 Q9NAW7_HAECO 166 205 DBREF 2WS2 B 1 164 UNP Q9NAW7 Q9NAW7_HAECO 1 164 DBREF 2WS2 B 165 204 UNP Q9NAW7 Q9NAW7_HAECO 166 205 SEQADV 2WS2 GLY A 164 UNP Q9NAW7 THR 164 SEE REMARK 999 SEQADV 2WS2 GLY B 164 UNP Q9NAW7 THR 164 SEE REMARK 999 SEQRES 1 A 204 MET VAL HIS TYR LYS LEU THR TYR PHE ASN GLY ARG GLY SEQRES 2 A 204 ALA ALA GLU ILE ILE ARG GLN VAL PHE VAL LEU ALA GLY SEQRES 3 A 204 GLN ASP TYR GLU ASP VAL ARG LEU THR HIS GLU GLU TRP SEQRES 4 A 204 PRO LYS HIS LYS ALA SER MET PRO PHE GLY GLN LEU PRO SEQRES 5 A 204 VAL LEU GLU VAL ASP GLY LYS GLN LEU PRO GLN SER VAL SEQRES 6 A 204 ALA ILE VAL ARG TYR LEU ALA ARG LYS PHE GLY TYR ALA SEQRES 7 A 204 GLY LYS SER ALA TRP GLU GLU ALA VAL VAL ASP SER ILE SEQRES 8 A 204 ALA ASP GLN PHE LYS ASP PHE LEU ASN GLU VAL ARG PRO SEQRES 9 A 204 TYR PHE LYS VAL LEU LEU GLY MET ASP GLN GLY ASP LEU SEQRES 10 A 204 LYS ALA LEU GLU LYS ASP VAL PHE GLU PRO ALA ARG GLN SEQRES 11 A 204 LYS PHE PHE THR ILE VAL THR LYS ILE LEU LYS GLU ASN SEQRES 12 A 204 LYS THR GLY TYR LEU VAL GLY ASP SER LEU THR PHE ALA SEQRES 13 A 204 ASP LEU TYR VAL ALA GLU MET GLY PHE THR GLU HIS TYR SEQRES 14 A 204 PRO LYS LEU TYR ASP GLY PHE PRO GLU VAL LYS ALA HIS SEQRES 15 A 204 ALA GLU LYS VAL ARG SER ASN PRO LYS LEU LYS LYS TRP SEQRES 16 A 204 ILE GLU THR ARG PRO ALA SER LYS PHE SEQRES 1 B 204 MET VAL HIS TYR LYS LEU THR TYR PHE ASN GLY ARG GLY SEQRES 2 B 204 ALA ALA GLU ILE ILE ARG GLN VAL PHE VAL LEU ALA GLY SEQRES 3 B 204 GLN ASP TYR GLU ASP VAL ARG LEU THR HIS GLU GLU TRP SEQRES 4 B 204 PRO LYS HIS LYS ALA SER MET PRO PHE GLY GLN LEU PRO SEQRES 5 B 204 VAL LEU GLU VAL ASP GLY LYS GLN LEU PRO GLN SER VAL SEQRES 6 B 204 ALA ILE VAL ARG TYR LEU ALA ARG LYS PHE GLY TYR ALA SEQRES 7 B 204 GLY LYS SER ALA TRP GLU GLU ALA VAL VAL ASP SER ILE SEQRES 8 B 204 ALA ASP GLN PHE LYS ASP PHE LEU ASN GLU VAL ARG PRO SEQRES 9 B 204 TYR PHE LYS VAL LEU LEU GLY MET ASP GLN GLY ASP LEU SEQRES 10 B 204 LYS ALA LEU GLU LYS ASP VAL PHE GLU PRO ALA ARG GLN SEQRES 11 B 204 LYS PHE PHE THR ILE VAL THR LYS ILE LEU LYS GLU ASN SEQRES 12 B 204 LYS THR GLY TYR LEU VAL GLY ASP SER LEU THR PHE ALA SEQRES 13 B 204 ASP LEU TYR VAL ALA GLU MET GLY PHE THR GLU HIS TYR SEQRES 14 B 204 PRO LYS LEU TYR ASP GLY PHE PRO GLU VAL LYS ALA HIS SEQRES 15 B 204 ALA GLU LYS VAL ARG SER ASN PRO LYS LEU LYS LYS TRP SEQRES 16 B 204 ILE GLU THR ARG PRO ALA SER LYS PHE FORMUL 3 HOH *178(H2 O) HELIX 1 1 ALA A 15 ALA A 25 1 11 HELIX 2 2 GLU A 38 HIS A 42 5 5 HELIX 3 3 HIS A 42 MET A 46 5 5 HELIX 4 4 GLN A 63 PHE A 75 1 13 HELIX 5 5 SER A 81 GLU A 101 1 21 HELIX 6 6 VAL A 102 VAL A 108 1 7 HELIX 7 7 LEU A 117 LYS A 122 1 6 HELIX 8 8 PHE A 125 LYS A 144 1 20 HELIX 9 9 THR A 154 MET A 163 1 10 HELIX 10 10 PHE A 176 ARG A 187 1 12 HELIX 11 11 ASN A 189 ARG A 199 1 11 HELIX 12 12 ALA B 15 ALA B 25 1 11 HELIX 13 13 GLU B 38 HIS B 42 5 5 HELIX 14 14 HIS B 42 MET B 46 5 5 HELIX 15 15 GLN B 63 PHE B 75 1 13 HELIX 16 16 SER B 81 ARG B 103 1 23 HELIX 17 17 PRO B 104 PHE B 106 5 3 HELIX 18 18 ALA B 119 VAL B 124 1 6 HELIX 19 19 VAL B 124 LYS B 144 1 21 HELIX 20 20 THR B 154 GLU B 162 1 9 HELIX 21 21 PHE B 176 ARG B 187 1 12 HELIX 22 22 ASN B 189 ARG B 199 1 11 SHEET 1 AA 4 GLU A 30 LEU A 34 0 SHEET 2 AA 4 TYR A 4 PHE A 9 1 O TYR A 4 N GLU A 30 SHEET 3 AA 4 VAL A 53 VAL A 56 -1 O VAL A 53 N THR A 7 SHEET 4 AA 4 GLN A 60 PRO A 62 -1 O LEU A 61 N LEU A 54 SHEET 1 BA 4 GLU B 30 LEU B 34 0 SHEET 2 BA 4 TYR B 4 PHE B 9 1 O TYR B 4 N GLU B 30 SHEET 3 BA 4 VAL B 53 VAL B 56 -1 O VAL B 53 N THR B 7 SHEET 4 BA 4 GLN B 60 PRO B 62 -1 O LEU B 61 N LEU B 54 CISPEP 1 LEU A 51 PRO A 52 0 6.15 CISPEP 2 LEU B 51 PRO B 52 0 -0.95 CRYST1 47.216 101.382 47.170 90.00 100.46 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021179 0.000000 0.003910 0.00000 SCALE2 0.000000 0.009864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021558 0.00000