HEADER ISOMERASE 08-SEP-09 2WSQ TITLE MONOTIM MUTANT RMM0-1, DIMERIC FORM. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSE PHOSPHATE ISOMERASE, GLYCOSOMAL; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 2-67,84-250; COMPND 5 SYNONYM: TIM, TRIOSE-PHOSPHATE ISOMERASE, MONOTIM MUTANT RMM0-1; COMPND 6 EC: 5.3.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS TEMPERATURE DEPENDANT EQUILIBRIUM, CATALYSIS, ISOMERASE, GLYCOSOME, KEYWDS 2 GLYCOLYSIS, PENTOSE SHUNT, GLUCONEOGENESIS, LIPID SYNTHESIS, FATTY KEYWDS 3 ACID BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR E.RUDINO-PINERA,S.P.ROJAS-TREJO,R.ARREOLA,G.SAAB-RINCON,X.SOBERON, AUTHOR 2 E.HORJALES REVDAT 4 20-DEC-23 2WSQ 1 REMARK REVDAT 3 15-MAY-19 2WSQ 1 REMARK REVDAT 2 02-FEB-10 2WSQ 1 KEYWDS REMARK REVDAT 1 15-SEP-09 2WSQ 0 JRNL AUTH E.RUDINO-PINERA,S.P.ROJAS-TREJO,R.ARREOLA,G.SAAB-RINCON, JRNL AUTH 2 X.SOBERON,E.HORJALES JRNL TITL SPACE GROUP TRANSITION DRIVEN BY TEMPERATURE AND RELATED TO JRNL TITL 2 MONOMER-DIMER TRANSITION IN SOLUTION: THE CASE OF MONOMERIC JRNL TITL 3 TIM OF TRYPANOSOMA BRUCEI BRUCEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 71.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 48510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5446 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3543 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 399 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7311 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 1553 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.04000 REMARK 3 B22 (A**2) : -0.88000 REMARK 3 B33 (A**2) : 1.91000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.372 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.333 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7476 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10145 ; 1.586 ; 1.942 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 960 ; 4.192 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 304 ;42.829 ;24.737 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1247 ;14.649 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;17.275 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1169 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5544 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4267 ; 0.261 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5209 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 971 ; 0.182 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 189 ; 0.257 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 69 ; 0.218 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4895 ; 1.277 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7661 ; 1.775 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2939 ; 2.555 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2484 ; 3.478 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WSQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1290041047. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR, SINGLE REMARK 200 CRYSTAL (SI111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING). REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53956 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1TRI REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES BUFFER PH 6.2, 180 MM REMARK 280 LI2SO4, 26 PERCENT PEG 6000, 5 MM DITHIOTHREITOL, 1 MM EDTA AND REMARK 280 1 MM NAN3, AT 30 DEGREES CELSIUS., TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.44100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.44250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.04100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.44250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.44100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.04100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 43 TO PRO REMARK 400 ENGINEERED RESIDUE IN CHAIN A, THR 44 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ALA 186 TO THR REMARK 400 ENGINEERED RESIDUE IN CHAIN B, SER 43 TO PRO REMARK 400 ENGINEERED RESIDUE IN CHAIN B, THR 44 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN B, ALA 186 TO THR REMARK 400 ENGINEERED RESIDUE IN CHAIN C, SER 43 TO PRO REMARK 400 ENGINEERED RESIDUE IN CHAIN C, THR 44 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN C, ALA 186 TO THR REMARK 400 ENGINEERED RESIDUE IN CHAIN D, SER 43 TO PRO REMARK 400 ENGINEERED RESIDUE IN CHAIN D, THR 44 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN D, ALA 186 TO THR REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER D 44 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN B 182 O HOH B 2298 2.02 REMARK 500 O4 SO4 B 1252 O HOH B 2368 2.08 REMARK 500 NZ LYS A 52 O HOH A 2129 2.13 REMARK 500 O HOH B 2039 O HOH C 2226 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 72 C LEU A 80 N 0.211 REMARK 500 GLY C 72 C LEU C 80 N 0.186 REMARK 500 GLY D 72 C LEU D 80 N 0.225 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 72 O - C - N ANGL. DEV. = -11.4 DEGREES REMARK 500 GLY C 72 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 2.02 -156.36 REMARK 500 SER A 17 -107.81 -133.17 REMARK 500 GLN A 19 -43.59 165.19 REMARK 500 ASN A 34 -72.97 -71.99 REMARK 500 ASN A 66 76.69 29.38 REMARK 500 ASN A 69 117.95 57.98 REMARK 500 THR A 249 52.15 -93.24 REMARK 500 LYS B 13 -26.44 -147.79 REMARK 500 CYS B 14 155.65 -30.30 REMARK 500 SER B 17 -179.36 162.75 REMARK 500 ASN B 34 -68.25 -95.88 REMARK 500 ASN B 69 147.44 -176.75 REMARK 500 THR B 249 45.13 -94.11 REMARK 500 LYS C 13 82.94 -165.53 REMARK 500 ASN C 15 -90.16 79.61 REMARK 500 ASN C 34 -74.11 -52.22 REMARK 500 SER C 56 -5.28 -142.83 REMARK 500 ASN C 69 138.37 175.23 REMARK 500 THR C 249 52.31 -91.69 REMARK 500 LYS D 13 -14.32 -154.32 REMARK 500 CYS D 14 169.62 -44.59 REMARK 500 SER D 17 -150.17 -77.66 REMARK 500 GLN D 18 -65.19 68.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 72 -22.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2006 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A2012 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A2016 DISTANCE = 9.53 ANGSTROMS REMARK 525 HOH A2018 DISTANCE = 9.15 ANGSTROMS REMARK 525 HOH A2019 DISTANCE = 7.75 ANGSTROMS REMARK 525 HOH A2020 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A2025 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A2026 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A2028 DISTANCE = 7.11 ANGSTROMS REMARK 525 HOH A2029 DISTANCE = 7.04 ANGSTROMS REMARK 525 HOH A2030 DISTANCE = 8.26 ANGSTROMS REMARK 525 HOH A2033 DISTANCE = 9.26 ANGSTROMS REMARK 525 HOH A2034 DISTANCE = 8.46 ANGSTROMS REMARK 525 HOH A2035 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A2053 DISTANCE = 7.48 ANGSTROMS REMARK 525 HOH A2069 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A2075 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A2077 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A2078 DISTANCE = 9.06 ANGSTROMS REMARK 525 HOH A2086 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH A2092 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A2094 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A2098 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A2099 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH A2112 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A2113 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A2151 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH A2165 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH B2006 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B2007 DISTANCE = 6.85 ANGSTROMS REMARK 525 HOH B2016 DISTANCE = 10.85 ANGSTROMS REMARK 525 HOH B2024 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH B2027 DISTANCE = 7.84 ANGSTROMS REMARK 525 HOH B2028 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH B2029 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH B2038 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH B2041 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B2045 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH B2048 DISTANCE = 7.52 ANGSTROMS REMARK 525 HOH B2052 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B2056 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH B2057 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B2060 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B2069 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH B2070 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B2085 DISTANCE = 7.12 ANGSTROMS REMARK 525 HOH B2086 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH B2096 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH B2102 DISTANCE = 6.23 ANGSTROMS REMARK 525 HOH B2108 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B2111 DISTANCE = 7.70 ANGSTROMS REMARK 525 HOH B2116 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH B2197 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH B2212 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH C2005 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH C2008 DISTANCE = 8.53 ANGSTROMS REMARK 525 HOH C2010 DISTANCE = 7.53 ANGSTROMS REMARK 525 HOH C2015 DISTANCE = 7.06 ANGSTROMS REMARK 525 HOH C2018 DISTANCE = 10.28 ANGSTROMS REMARK 525 HOH C2019 DISTANCE = 7.05 ANGSTROMS REMARK 525 HOH C2022 DISTANCE = 8.24 ANGSTROMS REMARK 525 HOH C2025 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH C2026 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH C2027 DISTANCE = 9.73 ANGSTROMS REMARK 525 HOH C2037 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH C2038 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH C2039 DISTANCE = 8.57 ANGSTROMS REMARK 525 HOH C2040 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH C2053 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH C2077 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH C2090 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH C2092 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH C2093 DISTANCE = 10.69 ANGSTROMS REMARK 525 HOH C2100 DISTANCE = 7.18 ANGSTROMS REMARK 525 HOH C2114 DISTANCE = 6.20 ANGSTROMS REMARK 525 HOH C2176 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH C2177 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH C2201 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH C2204 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH C2205 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH C2206 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH C2208 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH C2213 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH D2011 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH D2016 DISTANCE = 8.13 ANGSTROMS REMARK 525 HOH D2020 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH D2021 DISTANCE = 8.28 ANGSTROMS REMARK 525 HOH D2022 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH D2023 DISTANCE = 9.62 ANGSTROMS REMARK 525 HOH D2024 DISTANCE = 7.97 ANGSTROMS REMARK 525 HOH D2026 DISTANCE = 9.88 ANGSTROMS REMARK 525 HOH D2027 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH D2028 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH D2029 DISTANCE = 9.31 ANGSTROMS REMARK 525 HOH D2030 DISTANCE = 8.94 ANGSTROMS REMARK 525 HOH D2038 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH D2040 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH D2043 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH D2044 DISTANCE = 9.24 ANGSTROMS REMARK 525 HOH D2045 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH D2053 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH D2058 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH D2062 DISTANCE = 7.54 ANGSTROMS REMARK 525 HOH D2067 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH D2069 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH D2078 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH D2079 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH D2080 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH D2089 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH D2102 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH D2106 DISTANCE = 7.81 ANGSTROMS REMARK 525 HOH D2110 DISTANCE = 8.62 ANGSTROMS REMARK 525 HOH D2111 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH D2112 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH D2114 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH D2116 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH D2117 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH D2151 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH D2181 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH D2189 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH D2196 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH D2197 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH D2198 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH D2200 DISTANCE = 6.97 ANGSTROMS REMARK 525 HOH D2201 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH D2208 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH D2209 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH D2210 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH D2246 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH D2248 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH D2264 DISTANCE = 6.49 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1251 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1252 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1253 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MSS RELATED DB: PDB REMARK 900 TRIOSEPHOSPHATE ISOMERASE MUTANT WITH PHE 45 REPLACED BY SER, VAL REMARK 900 46 REPLACED BY SER, AND RESIDUES 68 - 82 REPLACED BY THE RESIDUES REMARK 900 GNADALAS (F45S,V46S,68-82:GNADALAS) REMARK 900 RELATED ID: 2V2C RELATED DB: PDB REMARK 900 THE A178L MUTATION IN THE C-TERMINAL HINGE OF THE FLEXIBLE LOOP-6 REMARK 900 OF TRIOSEPHOSPHATE ISOMERASE (TIM) INDUCES A MORE CLOSED REMARK 900 CONFORMATION OF THIS HINGE REGION IN DIMERIC AND MONOMERIC TIM REMARK 900 RELATED ID: 2J27 RELATED DB: PDB REMARK 900 THE FUNCTIONAL ROLE OF THE CONSERVED ACTIVE SITE PROLINE OF REMARK 900 TRIOSEPHOSPHATE ISOMERASE REMARK 900 RELATED ID: 1TPF RELATED DB: PDB REMARK 900 TRIOSEPHOSPHATE ISOMERASE REMARK 900 RELATED ID: 1KV5 RELATED DB: PDB REMARK 900 STRUCTURE OF TRYPANOSOMA BRUCEI BRUCEI TIM WITH THE SALT-BRIDGE- REMARK 900 FORMING RESIDUE ARG191 MUTATED TO SER REMARK 900 RELATED ID: 1IIH RELATED DB: PDB REMARK 900 STRUCTURE OF TRYPANOSOMA BRUCEI BRUCEI TRIOSEPHOSPHATEISOMERASE REMARK 900 COMPLEXED WITH 3- PHOSPHOGLYCERATE REMARK 900 RELATED ID: 6TIM RELATED DB: PDB REMARK 900 TRIOSEPHOSPHATE ISOMERASE COMPLEX WITH GLYCEROL -3-PHOSPHATE REMARK 900 RELATED ID: 1TPE RELATED DB: PDB REMARK 900 TRIOSEPHOSPHATE ISOMERASE REMARK 900 RELATED ID: 1TPD RELATED DB: PDB REMARK 900 TRIOSEPHOSPHATE ISOMERASE REMARK 900 RELATED ID: 3TIM RELATED DB: PDB REMARK 900 TRIOSEPHOSPHATE ISOMERASE REMARK 900 RELATED ID: 2VEK RELATED DB: PDB REMARK 900 STRUCTURE-BASED ENZYME ENGINEERING EFFORTS WITH AN INACTIVE REMARK 900 MONOMERIC TIM VARIANT: THE IMPORTANCE OF A SINGLE POINT MUTATION REMARK 900 FOR GENERATING AN ACTIVE SITE WITH SUITABLE BINDING PROPERTIES REMARK 900 RELATED ID: 2VEL RELATED DB: PDB REMARK 900 STRUCTURE-BASED ENZYME ENGINEERING EFFORTS WITH AN INACTIVE REMARK 900 MONOMERIC TIM VARIANT: THE IMPORTANCE OF A SINGLE POINT MUTATION REMARK 900 FOR GENERATING AN ACTIVE SITE WITH SUITABLE BINDING PROPERTIES REMARK 900 RELATED ID: 2V2H RELATED DB: PDB REMARK 900 THE A178L MUTATION IN THE C-TERMINAL HINGE OF THE FLEXIBLE LOOP-6 REMARK 900 OF TRIOSEPHOSPHATE ISOMERASE (TIM) INDUCES A MORE CLOSED REMARK 900 CONFORMATION OF THIS HINGE REGION IN DIMERIC AND MONOMERIC TIM REMARK 900 RELATED ID: 1IIG RELATED DB: PDB REMARK 900 STRUCTURE OF TRYPANOSOMA BRUCEI BRUCEI TRIOSEPHOSPHATEISOMERASE REMARK 900 COMPLEXED WITH 3- PHOSPHONOPROPIONATE REMARK 900 RELATED ID: 1DKW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TRIOSE-PHOSPHATE ISOMERASE WITH MODIFIED REMARK 900 SUBSTRATE BINDING SITE REMARK 900 RELATED ID: 1TTJ RELATED DB: PDB REMARK 900 RELATED ID: 2VEM RELATED DB: PDB REMARK 900 STRUCTURE-BASED ENZYME ENGINEERING EFFORTS WITH AN INACTIVE REMARK 900 MONOMERIC TIM VARIANT: THE IMPORTANCE OF A SINGLE POINT MUTATION REMARK 900 FOR GENERATING AN ACTIVE SITE WITH SUITABLE BINDING PROPERTIES REMARK 900 RELATED ID: 1TRD RELATED DB: PDB REMARK 900 TRIOSEPHOSPHATE ISOMERASE 1 REMARK 900 RELATED ID: 2V5L RELATED DB: PDB REMARK 900 STRUCTURES OF THE OPEN AND CLOSED STATE OF TRYPANOSOMAL REMARK 900 TRIOSEPHOSPHATE ISOMERASE: AS OBSERVED IN A NEW CRYSTAL FORM: REMARK 900 IMPLICATIONS FOR THE REACTION MECHANISM REMARK 900 RELATED ID: 2V0T RELATED DB: PDB REMARK 900 THE A178L MUTATION IN THE C-TERMINAL HINGE OF THE FLEXIBLE LOOP-6 REMARK 900 OF TRIOSEPHOSPHATE ISOMERASE (TIM) INDUCES A MORE CLOSED REMARK 900 CONFORMATION OF THIS HINGE REGION IN DIMERIC AND MONOMERIC TIM REMARK 900 RELATED ID: 4TIM RELATED DB: PDB REMARK 900 TRIOSEPHOSPHATE ISOMERASE COMPLEX WITH 2- PHOSPHOGLYCERATE REMARK 900 RELATED ID: 1ML1 RELATED DB: PDB REMARK 900 PROTEIN ENGINEERING WITH MONOMERIC TRIOSEPHOSPHATEISOMERASE: THE REMARK 900 MODELLING AND STRUCTURE VERIFICATION OFA SEVEN RESIDUE LOOP REMARK 900 RELATED ID: 1TRI RELATED DB: PDB REMARK 900 TRIOSEPHOSPHATE ISOMERASE MUTANT WITH 15 RESIDUES (68 - 82) REMARK 900 REPLACED BY 8 RESIDUES REMARK 900 RELATED ID: 2J24 RELATED DB: PDB REMARK 900 THE FUNCTIONAL ROLE OF THE CONSERVED ACTIVE SITE PROLINE OF REMARK 900 TRIOSEPHOSPHATE ISOMERASE REMARK 900 RELATED ID: 2VEI RELATED DB: PDB REMARK 900 STRUCTURE-BASED ENZYME ENGINEERING EFFORTS WITH AN INACTIVE REMARK 900 MONOMERIC TIM VARIANT: THE IMPORTANCE OF A SINGLE POINT MUTATION REMARK 900 FOR GENERATING AN ACTIVE SITE WITH SUITABLE BINDING PROPERTIES REMARK 900 RELATED ID: 5TIM RELATED DB: PDB REMARK 900 TRIOSEPHOSPHATE ISOMERASE COMPLEX WITH SULFATE REMARK 900 RELATED ID: 1AG1 RELATED DB: PDB REMARK 900 MONOHYDROGEN PHOSPHATE BINDING TO TRYPANOSOMAL TRIOSEPHOSPHATE REMARK 900 ISOMERASE REMARK 900 RELATED ID: 2VEN RELATED DB: PDB REMARK 900 STRUCTURE-BASED ENZYME ENGINEERING EFFORTS WITH AN INACTIVE REMARK 900 MONOMERIC TIM VARIANT: THE IMPORTANCE OF A SINGLE POINT MUTATION REMARK 900 FOR GENERATING AN ACTIVE SITE WITH SUITABLE BINDING PROPERTIES REMARK 900 RELATED ID: 2V2D RELATED DB: PDB REMARK 900 THE A178L MUTATION IN THE C-TERMINAL HINGE OF THE FLEXIBLE LOOP-6 REMARK 900 OF TRIOSEPHOSPHATE ISOMERASE (TIM) INDUCES A MORE CLOSED REMARK 900 CONFORMATION OF THIS HINGE REGION IN DIMERIC AND MONOMERIC TIM REMARK 900 RELATED ID: 1MTM RELATED DB: PDB REMARK 900 LOOP-1 MODELING OF MONOTIM-A100W MUTANT REMARK 900 RELATED ID: 1TSI RELATED DB: PDB REMARK 900 TRIOSEPHOSPHATE ISOMERASE COMPLEX WITH N- HYDROXY-4-PHOSPHONO- REMARK 900 BUTANAMIDE REMARK 900 RELATED ID: 1TTI RELATED DB: PDB REMARK 900 RELATED ID: 2WSR RELATED DB: PDB REMARK 900 MONOTIM MUTANT RMM0-1, MONOMERIC FORM. REMARK 999 REMARK 999 SEQUENCE REMARK 999 UNIPROT DEPOSITION P04789 IS 94 PERCENT IDENTICAL IN REMARK 999 SEQUENCE TO MONOTIM MUTANT RMM0-1 DBREF 2WSQ A 2 67 UNP P04789 TPIS_TRYBB 2 67 DBREF 2WSQ A 68 83 PDB 2WSQ 2WSQ 68 83 DBREF 2WSQ A 84 250 UNP P04789 TPIS_TRYBB 84 250 DBREF 2WSQ B 2 67 UNP P04789 TPIS_TRYBB 2 67 DBREF 2WSQ B 68 83 PDB 2WSQ 2WSQ 68 83 DBREF 2WSQ B 84 250 UNP P04789 TPIS_TRYBB 84 250 DBREF 2WSQ C 2 67 UNP P04789 TPIS_TRYBB 2 67 DBREF 2WSQ C 68 83 PDB 2WSQ 2WSQ 68 83 DBREF 2WSQ C 84 250 UNP P04789 TPIS_TRYBB 84 250 DBREF 2WSQ D 2 67 UNP P04789 TPIS_TRYBB 2 67 DBREF 2WSQ D 68 83 PDB 2WSQ 2WSQ 68 83 DBREF 2WSQ D 84 250 UNP P04789 TPIS_TRYBB 84 250 SEQADV 2WSQ PRO A 43 UNP P04789 SER 43 ENGINEERED MUTATION SEQADV 2WSQ SER A 44 UNP P04789 THR 44 ENGINEERED MUTATION SEQADV 2WSQ THR A 186 UNP P04789 ALA 186 ENGINEERED MUTATION SEQADV 2WSQ PRO B 43 UNP P04789 SER 43 ENGINEERED MUTATION SEQADV 2WSQ SER B 44 UNP P04789 THR 44 ENGINEERED MUTATION SEQADV 2WSQ THR B 186 UNP P04789 ALA 186 ENGINEERED MUTATION SEQADV 2WSQ PRO C 43 UNP P04789 SER 43 ENGINEERED MUTATION SEQADV 2WSQ SER C 44 UNP P04789 THR 44 ENGINEERED MUTATION SEQADV 2WSQ THR C 186 UNP P04789 ALA 186 ENGINEERED MUTATION SEQADV 2WSQ PRO D 43 UNP P04789 SER 43 ENGINEERED MUTATION SEQADV 2WSQ SER D 44 UNP P04789 THR 44 ENGINEERED MUTATION SEQADV 2WSQ THR D 186 UNP P04789 ALA 186 ENGINEERED MUTATION SEQRES 1 A 242 SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS CYS SEQRES 2 A 242 ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP LEU SEQRES 3 A 242 PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS VAL SEQRES 4 A 242 VAL ALA PRO SER PHE VAL HIS LEU ALA MET THR LYS GLU SEQRES 5 A 242 ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN ASN SEQRES 6 A 242 ALA GLY ASN ALA ASP GLY LEU ALA SER LEU LYS ASP PHE SEQRES 7 A 242 GLY VAL ASN TRP ILE VAL LEU GLY HIS SER GLU ARG ARG SEQRES 8 A 242 ALA TYR TYR GLY GLU THR ASN GLU ILE VAL ALA ASP LYS SEQRES 9 A 242 VAL ALA ALA ALA VAL ALA SER GLY PHE MET VAL ILE ALA SEQRES 10 A 242 CYS ILE GLY GLU THR LEU GLN GLU ARG GLU SER GLY ARG SEQRES 11 A 242 THR ALA VAL VAL VAL LEU THR GLN ILE ALA ALA ILE ALA SEQRES 12 A 242 LYS LYS LEU LYS LYS ALA ASP TRP ALA LYS VAL VAL ILE SEQRES 13 A 242 ALA TYR GLU PRO VAL TRP ALA ILE GLY THR GLY LYS VAL SEQRES 14 A 242 ALA THR PRO GLN GLN ALA GLN GLU THR HIS ALA LEU ILE SEQRES 15 A 242 ARG SER TRP VAL SER SER LYS ILE GLY ALA ASP VAL ALA SEQRES 16 A 242 GLY GLU LEU ARG ILE LEU TYR GLY GLY SER VAL ASN GLY SEQRES 17 A 242 LYS ASN ALA ARG THR LEU TYR GLN GLN ARG ASP VAL ASN SEQRES 18 A 242 GLY PHE LEU VAL GLY GLY ALA SER LEU LYS PRO GLU PHE SEQRES 19 A 242 VAL ASP ILE ILE LYS ALA THR GLN SEQRES 1 B 242 SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS CYS SEQRES 2 B 242 ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP LEU SEQRES 3 B 242 PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS VAL SEQRES 4 B 242 VAL ALA PRO SER PHE VAL HIS LEU ALA MET THR LYS GLU SEQRES 5 B 242 ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN ASN SEQRES 6 B 242 ALA GLY ASN ALA ASP GLY LEU ALA SER LEU LYS ASP PHE SEQRES 7 B 242 GLY VAL ASN TRP ILE VAL LEU GLY HIS SER GLU ARG ARG SEQRES 8 B 242 ALA TYR TYR GLY GLU THR ASN GLU ILE VAL ALA ASP LYS SEQRES 9 B 242 VAL ALA ALA ALA VAL ALA SER GLY PHE MET VAL ILE ALA SEQRES 10 B 242 CYS ILE GLY GLU THR LEU GLN GLU ARG GLU SER GLY ARG SEQRES 11 B 242 THR ALA VAL VAL VAL LEU THR GLN ILE ALA ALA ILE ALA SEQRES 12 B 242 LYS LYS LEU LYS LYS ALA ASP TRP ALA LYS VAL VAL ILE SEQRES 13 B 242 ALA TYR GLU PRO VAL TRP ALA ILE GLY THR GLY LYS VAL SEQRES 14 B 242 ALA THR PRO GLN GLN ALA GLN GLU THR HIS ALA LEU ILE SEQRES 15 B 242 ARG SER TRP VAL SER SER LYS ILE GLY ALA ASP VAL ALA SEQRES 16 B 242 GLY GLU LEU ARG ILE LEU TYR GLY GLY SER VAL ASN GLY SEQRES 17 B 242 LYS ASN ALA ARG THR LEU TYR GLN GLN ARG ASP VAL ASN SEQRES 18 B 242 GLY PHE LEU VAL GLY GLY ALA SER LEU LYS PRO GLU PHE SEQRES 19 B 242 VAL ASP ILE ILE LYS ALA THR GLN SEQRES 1 C 242 SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS CYS SEQRES 2 C 242 ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP LEU SEQRES 3 C 242 PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS VAL SEQRES 4 C 242 VAL ALA PRO SER PHE VAL HIS LEU ALA MET THR LYS GLU SEQRES 5 C 242 ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN ASN SEQRES 6 C 242 ALA GLY ASN ALA ASP GLY LEU ALA SER LEU LYS ASP PHE SEQRES 7 C 242 GLY VAL ASN TRP ILE VAL LEU GLY HIS SER GLU ARG ARG SEQRES 8 C 242 ALA TYR TYR GLY GLU THR ASN GLU ILE VAL ALA ASP LYS SEQRES 9 C 242 VAL ALA ALA ALA VAL ALA SER GLY PHE MET VAL ILE ALA SEQRES 10 C 242 CYS ILE GLY GLU THR LEU GLN GLU ARG GLU SER GLY ARG SEQRES 11 C 242 THR ALA VAL VAL VAL LEU THR GLN ILE ALA ALA ILE ALA SEQRES 12 C 242 LYS LYS LEU LYS LYS ALA ASP TRP ALA LYS VAL VAL ILE SEQRES 13 C 242 ALA TYR GLU PRO VAL TRP ALA ILE GLY THR GLY LYS VAL SEQRES 14 C 242 ALA THR PRO GLN GLN ALA GLN GLU THR HIS ALA LEU ILE SEQRES 15 C 242 ARG SER TRP VAL SER SER LYS ILE GLY ALA ASP VAL ALA SEQRES 16 C 242 GLY GLU LEU ARG ILE LEU TYR GLY GLY SER VAL ASN GLY SEQRES 17 C 242 LYS ASN ALA ARG THR LEU TYR GLN GLN ARG ASP VAL ASN SEQRES 18 C 242 GLY PHE LEU VAL GLY GLY ALA SER LEU LYS PRO GLU PHE SEQRES 19 C 242 VAL ASP ILE ILE LYS ALA THR GLN SEQRES 1 D 242 SER LYS PRO GLN PRO ILE ALA ALA ALA ASN TRP LYS CYS SEQRES 2 D 242 ASN GLY SER GLN GLN SER LEU SER GLU LEU ILE ASP LEU SEQRES 3 D 242 PHE ASN SER THR SER ILE ASN HIS ASP VAL GLN CYS VAL SEQRES 4 D 242 VAL ALA PRO SER PHE VAL HIS LEU ALA MET THR LYS GLU SEQRES 5 D 242 ARG LEU SER HIS PRO LYS PHE VAL ILE ALA ALA GLN ASN SEQRES 6 D 242 ALA GLY ASN ALA ASP GLY LEU ALA SER LEU LYS ASP PHE SEQRES 7 D 242 GLY VAL ASN TRP ILE VAL LEU GLY HIS SER GLU ARG ARG SEQRES 8 D 242 ALA TYR TYR GLY GLU THR ASN GLU ILE VAL ALA ASP LYS SEQRES 9 D 242 VAL ALA ALA ALA VAL ALA SER GLY PHE MET VAL ILE ALA SEQRES 10 D 242 CYS ILE GLY GLU THR LEU GLN GLU ARG GLU SER GLY ARG SEQRES 11 D 242 THR ALA VAL VAL VAL LEU THR GLN ILE ALA ALA ILE ALA SEQRES 12 D 242 LYS LYS LEU LYS LYS ALA ASP TRP ALA LYS VAL VAL ILE SEQRES 13 D 242 ALA TYR GLU PRO VAL TRP ALA ILE GLY THR GLY LYS VAL SEQRES 14 D 242 ALA THR PRO GLN GLN ALA GLN GLU THR HIS ALA LEU ILE SEQRES 15 D 242 ARG SER TRP VAL SER SER LYS ILE GLY ALA ASP VAL ALA SEQRES 16 D 242 GLY GLU LEU ARG ILE LEU TYR GLY GLY SER VAL ASN GLY SEQRES 17 D 242 LYS ASN ALA ARG THR LEU TYR GLN GLN ARG ASP VAL ASN SEQRES 18 D 242 GLY PHE LEU VAL GLY GLY ALA SER LEU LYS PRO GLU PHE SEQRES 19 D 242 VAL ASP ILE ILE LYS ALA THR GLN HET SO4 A1251 5 HET SO4 B1251 5 HET SO4 B1252 5 HET SO4 B1253 5 HET SO4 C1251 5 HET SO4 C1252 5 HET SO4 D1251 5 HET SO4 D1252 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 8(O4 S 2-) FORMUL 13 HOH *1553(H2 O) HELIX 1 1 GLN A 19 SER A 30 1 12 HELIX 2 2 SER A 44 VAL A 46 5 3 HELIX 3 3 HIS A 47 LEU A 55 1 9 HELIX 4 4 LEU A 80 PHE A 86 1 7 HELIX 5 5 SER A 96 TYR A 102 1 7 HELIX 6 6 THR A 105 SER A 119 1 15 HELIX 7 7 THR A 130 SER A 136 1 7 HELIX 8 8 ARG A 138 LYS A 153 1 16 HELIX 9 9 LYS A 155 ALA A 160 5 6 HELIX 10 10 PRO A 168 ILE A 172 5 5 HELIX 11 11 THR A 179 ILE A 198 1 20 HELIX 12 12 ASN A 218 GLN A 224 1 7 HELIX 13 13 PRO A 240 ALA A 248 1 9 HELIX 14 14 GLN B 18 THR B 31 1 14 HELIX 15 15 SER B 44 VAL B 46 5 3 HELIX 16 16 HIS B 47 LEU B 55 1 9 HELIX 17 17 LEU B 80 PHE B 86 1 7 HELIX 18 18 SER B 96 TYR B 102 1 7 HELIX 19 19 THR B 105 SER B 119 1 15 HELIX 20 20 THR B 130 SER B 136 1 7 HELIX 21 21 ARG B 138 LYS B 153 1 16 HELIX 22 22 LYS B 155 ALA B 160 5 6 HELIX 23 23 PRO B 168 ILE B 172 5 5 HELIX 24 24 THR B 179 ILE B 198 1 20 HELIX 25 25 ASN B 218 GLN B 225 1 8 HELIX 26 26 GLU B 241 ALA B 248 1 8 HELIX 27 27 SER C 17 SER C 30 1 14 HELIX 28 28 SER C 44 VAL C 46 5 3 HELIX 29 29 HIS C 47 LEU C 55 1 9 HELIX 30 30 LEU C 80 PHE C 86 1 7 HELIX 31 31 SER C 96 TYR C 102 1 7 HELIX 32 32 THR C 105 SER C 119 1 15 HELIX 33 33 THR C 130 SER C 136 1 7 HELIX 34 34 ARG C 138 LYS C 153 1 16 HELIX 35 35 LYS C 155 ALA C 160 5 6 HELIX 36 36 PRO C 168 ILE C 172 5 5 HELIX 37 37 THR C 179 ILE C 198 1 20 HELIX 38 38 ASN C 218 GLN C 224 1 7 HELIX 39 39 GLU C 241 ALA C 248 1 8 HELIX 40 40 GLN D 18 SER D 30 1 13 HELIX 41 41 SER D 44 VAL D 46 5 3 HELIX 42 42 HIS D 47 LEU D 55 1 9 HELIX 43 43 SER D 82 PHE D 86 5 5 HELIX 44 44 SER D 96 TYR D 102 1 7 HELIX 45 45 THR D 105 SER D 119 1 15 HELIX 46 46 THR D 130 SER D 136 1 7 HELIX 47 47 ARG D 138 LEU D 154 1 17 HELIX 48 48 LYS D 155 ALA D 160 5 6 HELIX 49 49 PRO D 168 ILE D 172 5 5 HELIX 50 50 THR D 179 ILE D 198 1 20 HELIX 51 51 ASN D 218 GLN D 225 1 8 HELIX 52 52 GLU D 241 ALA D 248 1 8 SHEET 1 AA 8 ILE A 208 LEU A 209 0 SHEET 2 AA 8 VAL A 162 TYR A 166 1 O ILE A 164 N LEU A 209 SHEET 3 AA 8 MET A 122 ILE A 127 1 O VAL A 123 N VAL A 163 SHEET 4 AA 8 TRP A 90 HIS A 95 1 O ILE A 91 N ILE A 124 SHEET 5 AA 8 PHE A 60 GLN A 65 1 O ILE A 62 N TRP A 90 SHEET 6 AA 8 GLN A 38 ALA A 42 1 O CYS A 39 N VAL A 61 SHEET 7 AA 8 ILE A 7 ASN A 11 1 O ALA A 8 N VAL A 40 SHEET 8 AA 8 LEU A 232 VAL A 233 1 O VAL A 233 N ASN A 11 SHEET 1 BA 8 ILE B 208 LEU B 209 0 SHEET 2 BA 8 VAL B 162 TYR B 166 1 O ILE B 164 N LEU B 209 SHEET 3 BA 8 MET B 122 ILE B 127 1 O VAL B 123 N VAL B 163 SHEET 4 BA 8 TRP B 90 HIS B 95 1 O ILE B 91 N ILE B 124 SHEET 5 BA 8 PHE B 60 GLN B 65 1 O ILE B 62 N TRP B 90 SHEET 6 BA 8 GLN B 38 ALA B 42 1 O CYS B 39 N VAL B 61 SHEET 7 BA 8 ILE B 7 ASN B 11 1 O ALA B 8 N VAL B 40 SHEET 8 BA 8 LEU B 232 VAL B 233 1 O VAL B 233 N ASN B 11 SHEET 1 CA 8 ARG C 207 LEU C 209 0 SHEET 2 CA 8 VAL C 162 TYR C 166 1 O VAL C 162 N ARG C 207 SHEET 3 CA 8 MET C 122 ILE C 127 1 O VAL C 123 N VAL C 163 SHEET 4 CA 8 TRP C 90 HIS C 95 1 O ILE C 91 N ILE C 124 SHEET 5 CA 8 PHE C 60 GLN C 65 1 O ILE C 62 N TRP C 90 SHEET 6 CA 8 GLN C 38 ALA C 42 1 O CYS C 39 N VAL C 61 SHEET 7 CA 8 ILE C 7 ASN C 11 1 O ALA C 8 N VAL C 40 SHEET 8 CA 8 LEU C 232 VAL C 233 1 O VAL C 233 N ASN C 11 SHEET 1 DA 4 PHE D 60 ILE D 62 0 SHEET 2 DA 4 GLN D 38 ALA D 42 1 O CYS D 39 N VAL D 61 SHEET 3 DA 4 ILE D 7 ASN D 11 1 O ALA D 8 N VAL D 40 SHEET 4 DA 4 LEU D 232 VAL D 233 1 O VAL D 233 N ASN D 11 SHEET 1 DB 5 ALA D 64 GLN D 65 0 SHEET 2 DB 5 TRP D 90 HIS D 95 1 O TRP D 90 N ALA D 64 SHEET 3 DB 5 MET D 122 ILE D 127 1 O MET D 122 N ILE D 91 SHEET 4 DB 5 VAL D 162 TYR D 166 1 O VAL D 163 N ALA D 125 SHEET 5 DB 5 ILE D 208 LEU D 209 1 O LEU D 209 N TYR D 166 SITE 1 AC1 10 ILE A 172 GLY A 173 SER A 213 GLY A 234 SITE 2 AC1 10 GLY A 235 HOH A2335 HOH A2336 HOH A2358 SITE 3 AC1 10 HOH A2375 HOH A2376 SITE 1 AC2 9 ALA B 171 GLY B 173 GLY B 212 SER B 213 SITE 2 AC2 9 GLY B 234 GLY B 235 HOH B2324 HOH B2350 SITE 3 AC2 9 HOH B2352 SITE 1 AC3 11 ALA C 171 ILE C 172 GLY C 173 SER C 213 SITE 2 AC3 11 GLY C 234 GLY C 235 HOH C2328 HOH C2356 SITE 3 AC3 11 HOH C2370 HOH C2371 HOH C2372 SITE 1 AC4 9 ALA D 171 ILE D 172 GLY D 173 SER D 213 SITE 2 AC4 9 GLY D 234 GLY D 235 HOH D2334 HOH D2382 SITE 3 AC4 9 HOH D2428 SITE 1 AC5 5 ARG A 226 HOH A2352 GLY C 199 ALA C 200 SITE 2 AC5 5 ASP C 201 SITE 1 AC6 11 LYS B 152 LYS D 156 GLY D 199 ALA D 200 SITE 2 AC6 11 ASP D 201 VAL D 202 HOH D2430 HOH D2431 SITE 3 AC6 11 HOH D2432 HOH D2433 HOH D2434 SITE 1 AC7 7 ALA B 160 GLU B 205 ARG B 207 HOH B2366 SITE 2 AC7 7 HOH B2367 HOH B2368 HOH B2369 SITE 1 AC8 5 ARG B 98 TYR B 102 HOH B2370 ARG C 98 SITE 2 AC8 5 TYR C 102 CRYST1 90.882 94.082 108.885 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011003 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009184 0.00000