HEADER TRANSFERASE/DNA 16-SEP-09 2WTF TITLE DNA POLYMERASE ETA IN COMPLEX WITH THE CIS-DIAMMINEPLATINUM (II) 1,3- TITLE 2 GTG INTRASTRAND CROSS-LINK COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE ETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-513; COMPND 5 SYNONYM: DNA POLYMERASE ETA RAD30, RADIATION-SENSITIVE PROTEIN 30; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*TP*CP*TP*TP*CP*TP*GP*TP*GP*CP *TP*CP*AP*CP*CP*AP*CP)- COMPND 10 3'; COMPND 11 CHAIN: O, S; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: CISPLATIN 1,3 GTG INTRASTRAND CROSS-LINK BETWEEN O 3 COMPND 14 AND O 5, S 3 AND S 5; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: 5'-D(*GP*TP*GP*GP*TP*GP*AP*GP*CP)-3'; COMPND 17 CHAIN: P, T; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST007 DERIVATIVE; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES KEYWDS TRANSFERASE-DNA COMPLEX, NUCLEOTIDYLTRANSFERASE, TRANSLESION DNA KEYWDS 2 SYNTHESIS, TRANSFERASE, DNA-BINDING, DNA SYNTHESIS, DNA REPLICATION, KEYWDS 3 MUTATOR PROTEIN, DNA DAMAGE, DNA REPAIR EXPDTA X-RAY DIFFRACTION AUTHOR T.REISSNER,S.SCHNEIDER,O.ZIV,S.SCHORR,Z.LIVNEH,T.CARELL REVDAT 3 20-DEC-23 2WTF 1 REMARK LINK REVDAT 2 18-AUG-10 2WTF 1 JRNL REMARK HETNAM HETSYN REVDAT 2 2 1 FORMUL REVDAT 1 31-MAR-10 2WTF 0 JRNL AUTH T.REISSNER,S.SCHNEIDER,S.SCHORR,T.CARELL JRNL TITL CRYSTAL STRUCTURE OF A CISPLATIN-(1,3-GTG) CROSS-LINK WITHIN JRNL TITL 2 DNA POLYMERASE ETA. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 49 3077 2010 JRNL REFN ISSN 1433-7851 JRNL PMID 20333640 JRNL DOI 10.1002/ANIE.201000414 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 52206 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2793 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3849 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.3820 REMARK 3 BIN FREE R VALUE SET COUNT : 196 REMARK 3 BIN FREE R VALUE : 0.4540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8013 REMARK 3 NUCLEIC ACID ATOMS : 878 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.441 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.287 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.199 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.913 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9239 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6096 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12659 ; 1.633 ; 2.100 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14945 ; 0.946 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1017 ; 5.689 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 352 ;36.543 ;24.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1528 ;18.131 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;20.748 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1412 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9465 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1694 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5057 ; 0.834 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2055 ; 0.148 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8174 ; 1.600 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4182 ; 2.326 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4484 ; 3.694 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. RESIDUES A 510-513 REMARK 3 DISORDERED. REMARK 4 REMARK 4 2WTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1290041164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0766 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55019 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, SHARP REMARK 200 STARTING MODEL: PDB ENTRY 1JIH REMARK 200 REMARK 200 REMARK: MR PHASES WERE COMBINED WITH PLATINUM SAD PHASES USING REMARK 200 SHARP REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4MG/ML, 11-14% PEG3350, 0.15-0.2M REMARK 280 CACL2, 0.1M ATP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.37000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.62000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.62000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.18500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.62000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.62000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 219.55500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.62000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.62000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.18500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.62000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.62000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 219.55500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 146.37000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, O, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, S, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 ALA A -21 REMARK 465 SER A -20 REMARK 465 TRP A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 PRO A -16 REMARK 465 GLN A -15 REMARK 465 PHE A -14 REMARK 465 GLU A -13 REMARK 465 LYS A -12 REMARK 465 GLY A -11 REMARK 465 ALA A -10 REMARK 465 SER A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 ARG A 0 REMARK 465 ASP A 510 REMARK 465 LEU A 511 REMARK 465 GLN A 512 REMARK 465 LYS A 513 REMARK 465 MET B -22 REMARK 465 ALA B -21 REMARK 465 SER B -20 REMARK 465 TRP B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 PRO B -16 REMARK 465 GLN B -15 REMARK 465 PHE B -14 REMARK 465 GLU B -13 REMARK 465 LYS B -12 REMARK 465 GLY B -11 REMARK 465 ALA B -10 REMARK 465 SER B -9 REMARK 465 THR B -8 REMARK 465 SER B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 LYS B -4 REMARK 465 LYS B -3 REMARK 465 ALA B -2 REMARK 465 GLY B -1 REMARK 465 ARG B 0 REMARK 465 ILE B 509 REMARK 465 ASP B 510 REMARK 465 LEU B 511 REMARK 465 GLN B 512 REMARK 465 LYS B 513 REMARK 465 DT O -9 REMARK 465 DC O -8 REMARK 465 DT O -3 REMARK 465 DT S -6 REMARK 465 DC S -5 REMARK 465 DT S -4 REMARK 465 DT S -3 REMARK 465 DC S -2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 180 CG OD1 OD2 REMARK 470 LYS A 343 CD CE NZ REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 TYR A 355 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 355 OH REMARK 470 ASP A 356 CB CG OD1 OD2 REMARK 470 ARG A 357 CD NE CZ NH1 NH2 REMARK 470 SER A 358 CB OG REMARK 470 THR A 359 CB OG1 CG2 REMARK 470 GLU A 372 CD OE1 OE2 REMARK 470 ARG A 402 CD NE CZ NH1 NH2 REMARK 470 LYS A 436 CG CD CE NZ REMARK 470 LYS A 464 CB CG CD CE NZ REMARK 470 ILE A 466 CB CG1 CG2 REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 ASP B 180 CG OD1 OD2 REMARK 470 LYS B 436 CD CE NZ REMARK 470 LYS B 464 CB CG CD CE NZ REMARK 470 DT O -6 P OP1 OP2 O5' REMARK 470 DT O 1 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT O 1 C7 C6 REMARK 470 DG P 1 O5' REMARK 470 DC P 9 O3' REMARK 470 DG T 1 O5' REMARK 470 DC T 9 O3' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 245 CB CYS A 245 SG -0.098 REMARK 500 GLU A 372 CA GLU A 372 CB -0.168 REMARK 500 SER A 470 CA SER A 470 CB -0.196 REMARK 500 CYS B 245 CB CYS B 245 SG -0.139 REMARK 500 CYS B 420 CB CYS B 420 SG -0.132 REMARK 500 DG P 6 C5' DG P 6 C4' 0.049 REMARK 500 DC S 5 O3' DC S 5 C3' -0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 132 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 DT O -6 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT O -1 O5' - C5' - C4' ANGL. DEV. = -6.7 DEGREES REMARK 500 DT O -1 N3 - C4 - O4 ANGL. DEV. = 5.1 DEGREES REMARK 500 DT O -1 C5 - C4 - O4 ANGL. DEV. = -6.6 DEGREES REMARK 500 DC O 3 C1' - O4' - C4' ANGL. DEV. = -7.3 DEGREES REMARK 500 DT O 4 C4 - C5 - C7 ANGL. DEV. = 4.8 DEGREES REMARK 500 DC O 7 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC O 8 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG P 1 O4' - C4' - C3' ANGL. DEV. = -4.6 DEGREES REMARK 500 DG P 1 O4' - C1' - N9 ANGL. DEV. = -5.8 DEGREES REMARK 500 DT P 2 N3 - C4 - O4 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT P 2 C5 - C4 - O4 ANGL. DEV. = -6.4 DEGREES REMARK 500 DG P 4 N1 - C6 - O6 ANGL. DEV. = -6.0 DEGREES REMARK 500 DG P 4 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DT P 5 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG P 6 O4' - C1' - N9 ANGL. DEV. = 7.0 DEGREES REMARK 500 DA P 7 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG P 8 O4' - C1' - N9 ANGL. DEV. = 10.7 DEGREES REMARK 500 DT S -1 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DG S 0 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 DT S 1 C3' - O3' - P ANGL. DEV. = 7.3 DEGREES REMARK 500 DG S 2 O4' - C1' - N9 ANGL. DEV. = -6.7 DEGREES REMARK 500 DC S 10 N3 - C2 - O2 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC S 10 N3 - C4 - N4 ANGL. DEV. = -5.2 DEGREES REMARK 500 DC S 10 C5 - C4 - N4 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT T 5 C4 - C5 - C7 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 56 -121.10 57.76 REMARK 500 LYS A 97 126.80 -38.67 REMARK 500 HIS A 105 76.94 -112.39 REMARK 500 LYS A 117 66.43 -105.30 REMARK 500 ILE A 302 -39.97 -39.38 REMARK 500 THR A 307 -1.75 82.63 REMARK 500 ARG A 357 12.98 -69.60 REMARK 500 LYS A 366 39.58 -93.14 REMARK 500 TYR A 493 -96.47 -158.22 REMARK 500 TRP B 56 -123.45 58.17 REMARK 500 LYS B 97 128.30 -35.58 REMARK 500 HIS B 105 78.64 -116.16 REMARK 500 LYS B 117 50.32 -92.86 REMARK 500 SER B 153 -170.93 -173.20 REMARK 500 ASN B 223 62.72 -161.20 REMARK 500 THR B 307 -6.06 84.52 REMARK 500 LYS B 366 61.68 -108.55 REMARK 500 ASN B 490 57.88 -116.58 REMARK 500 LYS B 491 52.39 -143.52 REMARK 500 ASP B 507 -14.61 78.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1511 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD2 REMARK 620 2 ASP A 30 OD1 48.5 REMARK 620 3 MET A 31 O 111.7 71.3 REMARK 620 4 ASP A 155 OD1 97.3 115.8 80.4 REMARK 620 5 DTP A1510 O1G 95.4 83.4 108.2 160.7 REMARK 620 6 DTP A1510 O1B 160.5 144.2 87.7 87.6 75.8 REMARK 620 7 DTP A1510 O1A 85.8 129.9 158.4 85.0 81.6 75.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1512 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD2 REMARK 620 2 ASP A 155 OD2 90.6 REMARK 620 3 GLU A 156 OE1 77.1 102.9 REMARK 620 4 DTP A1510 O1A 89.6 92.9 159.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1514 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 289 OD2 REMARK 620 2 ASP A 289 OD1 44.8 REMARK 620 3 HOH A2033 O 59.7 100.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1513 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 318 OD1 REMARK 620 2 ASP A 318 O 61.4 REMARK 620 3 ASP A 321 OD2 129.6 69.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1509 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 30 OD2 REMARK 620 2 ASP B 155 OD2 98.1 REMARK 620 3 GLU B 156 OE1 89.7 98.4 REMARK 620 4 DTP B1511 O1A 93.1 93.3 167.5 REMARK 620 5 HOH B2020 O 167.6 83.1 77.9 99.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1510 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 30 OD1 REMARK 620 2 ASP B 30 OD2 45.0 REMARK 620 3 MET B 31 O 79.6 112.3 REMARK 620 4 ASP B 155 OD1 110.1 83.1 84.3 REMARK 620 5 DTP B1511 O2G 87.9 104.2 110.0 159.2 REMARK 620 6 DTP B1511 O1A 126.2 87.0 153.0 79.5 81.4 REMARK 620 7 DTP B1511 O1B 155.1 159.2 84.9 87.4 79.1 73.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1512 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 98 O REMARK 620 2 GLU B 417 OE2 81.2 REMARK 620 3 GLU B 417 OE1 98.0 45.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1513 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 289 OD2 REMARK 620 2 ASP B 289 OD1 46.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1515 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 298 O REMARK 620 2 GLU B 325 OE1 118.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1514 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 318 O REMARK 620 2 ASP B 321 OD2 102.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT O1014 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG O 0 N7 REMARK 620 2 CPT O1014 N1 177.5 REMARK 620 3 CPT O1014 N2 85.7 91.8 REMARK 620 4 DG O 2 N7 87.8 94.6 173.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT S1014 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG S 0 N7 REMARK 620 2 CPT S1014 N1 173.7 REMARK 620 3 CPT S1014 N2 99.3 87.0 REMARK 620 4 DG S 2 N7 81.5 92.2 172.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTP A 1510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTP B 1511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1515 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT O 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT S 1014 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JIH RELATED DB: PDB REMARK 900 YEAST DNA POLYMERASE ETA REMARK 900 RELATED ID: 2XGQ RELATED DB: PDB REMARK 900 STRUCTURE OF YEAST DNA POLYMERASE ETA IN COMPLEX WITH C8-N-ACETYL-2- REMARK 900 AMINOANTHRACENE CONTAINING DNA REMARK 900 RELATED ID: 2XGP RELATED DB: PDB REMARK 900 YEAST DNA POLYMERASE ETA IN COMPLEX WITH C8-2-ACETYLAMINOFLUORENE REMARK 900 CONTAINING DNA DBREF 2WTF A -22 0 PDB 2WTF 2WTF -22 0 DBREF 2WTF A 1 513 UNP Q04049 POLH_YEAST 1 513 DBREF 2WTF B -22 0 PDB 2WTF 2WTF -22 0 DBREF 2WTF B 1 513 UNP Q04049 POLH_YEAST 1 513 DBREF 2WTF O -6 10 PDB 2WTF 2WTF -6 10 DBREF 2WTF P 1 9 PDB 2WTF 2WTF 1 9 DBREF 2WTF S -6 10 PDB 2WTF 2WTF -6 10 DBREF 2WTF T 1 9 PDB 2WTF 2WTF 1 9 SEQRES 1 A 536 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 536 SER THR SER LEU TYR LYS LYS ALA GLY ARG MET SER LYS SEQRES 3 A 536 PHE THR TRP LYS GLU LEU ILE GLN LEU GLY SER PRO SER SEQRES 4 A 536 LYS ALA TYR GLU SER SER LEU ALA CYS ILE ALA HIS ILE SEQRES 5 A 536 ASP MET ASN ALA PHE PHE ALA GLN VAL GLU GLN MET ARG SEQRES 6 A 536 CYS GLY LEU SER LYS GLU ASP PRO VAL VAL CYS VAL GLN SEQRES 7 A 536 TRP ASN SER ILE ILE ALA VAL SER TYR ALA ALA ARG LYS SEQRES 8 A 536 TYR GLY ILE SER ARG MET ASP THR ILE GLN GLU ALA LEU SEQRES 9 A 536 LYS LYS CYS SER ASN LEU ILE PRO ILE HIS THR ALA VAL SEQRES 10 A 536 PHE LYS LYS GLY GLU ASP PHE TRP GLN TYR HIS ASP GLY SEQRES 11 A 536 CYS GLY SER TRP VAL GLN ASP PRO ALA LYS GLN ILE SER SEQRES 12 A 536 VAL GLU ASP HIS LYS VAL SER LEU GLU PRO TYR ARG ARG SEQRES 13 A 536 GLU SER ARG LYS ALA LEU LYS ILE PHE LYS SER ALA CYS SEQRES 14 A 536 ASP LEU VAL GLU ARG ALA SER ILE ASP GLU VAL PHE LEU SEQRES 15 A 536 ASP LEU GLY ARG ILE CYS PHE ASN MET LEU MET PHE ASP SEQRES 16 A 536 ASN GLU TYR GLU LEU THR GLY ASP LEU LYS LEU LYS ASP SEQRES 17 A 536 ALA LEU SER ASN ILE ARG GLU ALA PHE ILE GLY GLY ASN SEQRES 18 A 536 TYR ASP ILE ASN SER HIS LEU PRO LEU ILE PRO GLU LYS SEQRES 19 A 536 ILE LYS SER LEU LYS PHE GLU GLY ASP VAL PHE ASN PRO SEQRES 20 A 536 GLU GLY ARG ASP LEU ILE THR ASP TRP ASP ASP VAL ILE SEQRES 21 A 536 LEU ALA LEU GLY SER GLN VAL CYS LYS GLY ILE ARG ASP SEQRES 22 A 536 SER ILE LYS ASP ILE LEU GLY TYR THR THR SER CYS GLY SEQRES 23 A 536 LEU SER SER THR LYS ASN VAL CYS LYS LEU ALA SER ASN SEQRES 24 A 536 TYR LYS LYS PRO ASP ALA GLN THR ILE VAL LYS ASN ASP SEQRES 25 A 536 CYS LEU LEU ASP PHE LEU ASP CYS GLY LYS PHE GLU ILE SEQRES 26 A 536 THR SER PHE TRP THR LEU GLY GLY VAL LEU GLY LYS GLU SEQRES 27 A 536 LEU ILE ASP VAL LEU ASP LEU PRO HIS GLU ASN SER ILE SEQRES 28 A 536 LYS HIS ILE ARG GLU THR TRP PRO ASP ASN ALA GLY GLN SEQRES 29 A 536 LEU LYS GLU PHE LEU ASP ALA LYS VAL LYS GLN SER ASP SEQRES 30 A 536 TYR ASP ARG SER THR SER ASN ILE ASP PRO LEU LYS THR SEQRES 31 A 536 ALA ASP LEU ALA GLU LYS LEU PHE LYS LEU SER ARG GLY SEQRES 32 A 536 ARG TYR GLY LEU PRO LEU SER SER ARG PRO VAL VAL LYS SEQRES 33 A 536 SER MET MET SER ASN LYS ASN LEU ARG GLY LYS SER CYS SEQRES 34 A 536 ASN SER ILE VAL ASP CYS ILE SER TRP LEU GLU VAL PHE SEQRES 35 A 536 CYS ALA GLU LEU THR SER ARG ILE GLN ASP LEU GLU GLN SEQRES 36 A 536 GLU TYR ASN LYS ILE VAL ILE PRO ARG THR VAL SER ILE SEQRES 37 A 536 SER LEU LYS THR LYS SER TYR GLU VAL TYR ARG LYS SER SEQRES 38 A 536 GLY PRO VAL ALA TYR LYS GLY ILE ASN PHE GLN SER HIS SEQRES 39 A 536 GLU LEU LEU LYS VAL GLY ILE LYS PHE VAL THR ASP LEU SEQRES 40 A 536 ASP ILE LYS GLY LYS ASN LYS SER TYR TYR PRO LEU THR SEQRES 41 A 536 LYS LEU SER MET THR ILE THR ASN PHE ASP ILE ILE ASP SEQRES 42 A 536 LEU GLN LYS SEQRES 1 B 536 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 B 536 SER THR SER LEU TYR LYS LYS ALA GLY ARG MET SER LYS SEQRES 3 B 536 PHE THR TRP LYS GLU LEU ILE GLN LEU GLY SER PRO SER SEQRES 4 B 536 LYS ALA TYR GLU SER SER LEU ALA CYS ILE ALA HIS ILE SEQRES 5 B 536 ASP MET ASN ALA PHE PHE ALA GLN VAL GLU GLN MET ARG SEQRES 6 B 536 CYS GLY LEU SER LYS GLU ASP PRO VAL VAL CYS VAL GLN SEQRES 7 B 536 TRP ASN SER ILE ILE ALA VAL SER TYR ALA ALA ARG LYS SEQRES 8 B 536 TYR GLY ILE SER ARG MET ASP THR ILE GLN GLU ALA LEU SEQRES 9 B 536 LYS LYS CYS SER ASN LEU ILE PRO ILE HIS THR ALA VAL SEQRES 10 B 536 PHE LYS LYS GLY GLU ASP PHE TRP GLN TYR HIS ASP GLY SEQRES 11 B 536 CYS GLY SER TRP VAL GLN ASP PRO ALA LYS GLN ILE SER SEQRES 12 B 536 VAL GLU ASP HIS LYS VAL SER LEU GLU PRO TYR ARG ARG SEQRES 13 B 536 GLU SER ARG LYS ALA LEU LYS ILE PHE LYS SER ALA CYS SEQRES 14 B 536 ASP LEU VAL GLU ARG ALA SER ILE ASP GLU VAL PHE LEU SEQRES 15 B 536 ASP LEU GLY ARG ILE CYS PHE ASN MET LEU MET PHE ASP SEQRES 16 B 536 ASN GLU TYR GLU LEU THR GLY ASP LEU LYS LEU LYS ASP SEQRES 17 B 536 ALA LEU SER ASN ILE ARG GLU ALA PHE ILE GLY GLY ASN SEQRES 18 B 536 TYR ASP ILE ASN SER HIS LEU PRO LEU ILE PRO GLU LYS SEQRES 19 B 536 ILE LYS SER LEU LYS PHE GLU GLY ASP VAL PHE ASN PRO SEQRES 20 B 536 GLU GLY ARG ASP LEU ILE THR ASP TRP ASP ASP VAL ILE SEQRES 21 B 536 LEU ALA LEU GLY SER GLN VAL CYS LYS GLY ILE ARG ASP SEQRES 22 B 536 SER ILE LYS ASP ILE LEU GLY TYR THR THR SER CYS GLY SEQRES 23 B 536 LEU SER SER THR LYS ASN VAL CYS LYS LEU ALA SER ASN SEQRES 24 B 536 TYR LYS LYS PRO ASP ALA GLN THR ILE VAL LYS ASN ASP SEQRES 25 B 536 CYS LEU LEU ASP PHE LEU ASP CYS GLY LYS PHE GLU ILE SEQRES 26 B 536 THR SER PHE TRP THR LEU GLY GLY VAL LEU GLY LYS GLU SEQRES 27 B 536 LEU ILE ASP VAL LEU ASP LEU PRO HIS GLU ASN SER ILE SEQRES 28 B 536 LYS HIS ILE ARG GLU THR TRP PRO ASP ASN ALA GLY GLN SEQRES 29 B 536 LEU LYS GLU PHE LEU ASP ALA LYS VAL LYS GLN SER ASP SEQRES 30 B 536 TYR ASP ARG SER THR SER ASN ILE ASP PRO LEU LYS THR SEQRES 31 B 536 ALA ASP LEU ALA GLU LYS LEU PHE LYS LEU SER ARG GLY SEQRES 32 B 536 ARG TYR GLY LEU PRO LEU SER SER ARG PRO VAL VAL LYS SEQRES 33 B 536 SER MET MET SER ASN LYS ASN LEU ARG GLY LYS SER CYS SEQRES 34 B 536 ASN SER ILE VAL ASP CYS ILE SER TRP LEU GLU VAL PHE SEQRES 35 B 536 CYS ALA GLU LEU THR SER ARG ILE GLN ASP LEU GLU GLN SEQRES 36 B 536 GLU TYR ASN LYS ILE VAL ILE PRO ARG THR VAL SER ILE SEQRES 37 B 536 SER LEU LYS THR LYS SER TYR GLU VAL TYR ARG LYS SER SEQRES 38 B 536 GLY PRO VAL ALA TYR LYS GLY ILE ASN PHE GLN SER HIS SEQRES 39 B 536 GLU LEU LEU LYS VAL GLY ILE LYS PHE VAL THR ASP LEU SEQRES 40 B 536 ASP ILE LYS GLY LYS ASN LYS SER TYR TYR PRO LEU THR SEQRES 41 B 536 LYS LEU SER MET THR ILE THR ASN PHE ASP ILE ILE ASP SEQRES 42 B 536 LEU GLN LYS SEQRES 1 O 17 DT DC DT DT DC DT DG DT DG DC DT DC DA SEQRES 2 O 17 DC DC DA DC SEQRES 1 P 9 DG DT DG DG DT DG DA DG DC SEQRES 1 S 17 DT DC DT DT DC DT DG DT DG DC DT DC DA SEQRES 2 S 17 DC DC DA DC SEQRES 1 T 9 DG DT DG DG DT DG DA DG DC HET DTP A1510 30 HET CA A1511 1 HET CA A1512 1 HET CA A1513 1 HET CA A1514 1 HET CA B1509 1 HET CA B1510 1 HET DTP B1511 30 HET CA B1512 1 HET CA B1513 1 HET CA B1514 1 HET CA B1515 1 HET CPT O1014 3 HET CPT S1014 3 HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM CPT CISPLATIN HETSYN CPT DIAMMINE(DICHLORO)PLATINUM FORMUL 7 DTP 2(C10 H16 N5 O12 P3) FORMUL 8 CA 10(CA 2+) FORMUL 19 CPT 2(CL2 H6 N2 PT) FORMUL 21 HOH *120(H2 O) HELIX 1 1 THR A 5 GLN A 11 1 7 HELIX 2 2 LYS A 17 SER A 21 5 5 HELIX 3 3 ALA A 33 CYS A 43 1 11 HELIX 4 4 ALA A 65 TYR A 69 5 5 HELIX 5 5 THR A 76 LYS A 82 1 7 HELIX 6 6 LEU A 128 CYS A 146 1 19 HELIX 7 7 ARG A 163 ASP A 172 1 10 HELIX 8 8 LYS A 182 LEU A 187 1 6 HELIX 9 9 LEU A 187 ILE A 195 1 9 HELIX 10 10 PRO A 209 LEU A 215 5 7 HELIX 11 11 ASP A 232 LEU A 240 1 9 HELIX 12 12 ILE A 248 LEU A 256 1 9 HELIX 13 13 THR A 267 ASN A 276 1 10 HELIX 14 14 CYS A 290 CYS A 297 1 8 HELIX 15 15 GLU A 301 PHE A 305 5 5 HELIX 16 16 LYS A 314 LEU A 320 1 7 HELIX 17 17 ASN A 326 TRP A 335 1 10 HELIX 18 18 GLN A 341 GLN A 352 1 12 HELIX 19 19 LYS A 366 ARG A 379 1 14 HELIX 20 20 SER A 408 ASN A 435 1 28 HELIX 21 21 GLN A 469 VAL A 476 1 8 HELIX 22 22 ILE A 478 LYS A 487 1 10 HELIX 23 23 THR B 5 LEU B 12 1 8 HELIX 24 24 ALA B 33 CYS B 43 1 11 HELIX 25 25 SER B 63 LYS B 68 1 6 HELIX 26 26 THR B 76 CYS B 84 1 9 HELIX 27 27 LEU B 128 CYS B 146 1 19 HELIX 28 28 ARG B 163 ASP B 172 1 10 HELIX 29 29 LYS B 182 LEU B 187 1 6 HELIX 30 30 LEU B 187 ILE B 195 1 9 HELIX 31 31 PRO B 209 LEU B 215 5 7 HELIX 32 32 ASP B 232 LEU B 240 1 9 HELIX 33 33 ILE B 248 LEU B 256 1 9 HELIX 34 34 THR B 267 LYS B 278 1 12 HELIX 35 35 LYS B 287 ASP B 289 5 3 HELIX 36 36 CYS B 290 ASP B 296 1 7 HELIX 37 37 GLU B 301 PHE B 305 5 5 HELIX 38 38 LYS B 314 LEU B 320 1 7 HELIX 39 39 ASN B 326 TRP B 335 1 10 HELIX 40 40 GLN B 341 LYS B 351 1 11 HELIX 41 41 ASP B 356 SER B 360 5 5 HELIX 42 42 LYS B 366 ARG B 379 1 14 HELIX 43 43 SER B 408 ASN B 435 1 28 HELIX 44 44 GLN B 469 VAL B 476 1 8 HELIX 45 45 ILE B 478 LYS B 487 1 10 SHEET 1 AA 5 VAL A 149 SER A 153 0 SHEET 2 AA 5 GLU A 156 ASP A 160 -1 O GLU A 156 N SER A 153 SHEET 3 AA 5 ILE A 26 MET A 31 -1 O ALA A 27 N LEU A 159 SHEET 4 AA 5 THR A 260 CYS A 262 -1 O SER A 261 N ASP A 30 SHEET 5 AA 5 ALA A 282 GLN A 283 1 O ALA A 282 N CYS A 262 SHEET 1 AB 3 SER A 58 VAL A 62 0 SHEET 2 AB 3 VAL A 51 GLN A 55 -1 O CYS A 53 N ILE A 60 SHEET 3 AB 3 ILE A 88 HIS A 91 1 O ILE A 88 N VAL A 52 SHEET 1 AC 3 TRP A 102 GLN A 103 0 SHEET 2 AC 3 ALA A 93 LYS A 96 -1 O VAL A 94 N GLN A 103 SHEET 3 AC 3 HIS A 124 SER A 127 -1 O LYS A 125 N PHE A 95 SHEET 1 AD 4 SER A 394 ASN A 400 0 SHEET 2 AD 4 LYS A 498 ILE A 508 -1 O LEU A 499 N LYS A 399 SHEET 3 AD 4 VAL A 438 LYS A 448 -1 O ILE A 439 N ASP A 507 SHEET 4 AD 4 VAL A 454 LYS A 457 -1 O TYR A 455 N LEU A 447 SHEET 1 BA 5 VAL B 149 SER B 153 0 SHEET 2 BA 5 GLU B 156 ASP B 160 -1 O GLU B 156 N SER B 153 SHEET 3 BA 5 ILE B 26 MET B 31 -1 O ALA B 27 N LEU B 159 SHEET 4 BA 5 THR B 260 CYS B 262 -1 O SER B 261 N ASP B 30 SHEET 5 BA 5 ALA B 282 GLN B 283 1 O ALA B 282 N CYS B 262 SHEET 1 BB 3 SER B 58 VAL B 62 0 SHEET 2 BB 3 VAL B 51 GLN B 55 -1 O CYS B 53 N ILE B 60 SHEET 3 BB 3 ILE B 88 HIS B 91 1 O ILE B 88 N VAL B 52 SHEET 1 BC 3 TRP B 102 GLN B 103 0 SHEET 2 BC 3 ALA B 93 LYS B 96 -1 O VAL B 94 N GLN B 103 SHEET 3 BC 3 HIS B 124 SER B 127 -1 O LYS B 125 N PHE B 95 SHEET 1 BD 4 MET B 395 ASN B 400 0 SHEET 2 BD 4 LYS B 498 PHE B 506 -1 O LEU B 499 N LYS B 399 SHEET 3 BD 4 PRO B 440 LYS B 448 -1 N ARG B 441 O ASN B 505 SHEET 4 BD 4 VAL B 454 LYS B 457 -1 O TYR B 455 N LEU B 447 LINK OD2 ASP A 30 CA CA A1511 1555 1555 2.83 LINK OD1 ASP A 30 CA CA A1511 1555 1555 2.15 LINK OD2 ASP A 30 CA CA A1512 1555 1555 2.65 LINK O MET A 31 CA CA A1511 1555 1555 2.29 LINK OD1 ASP A 155 CA CA A1511 1555 1555 2.38 LINK OD2 ASP A 155 CA CA A1512 1555 1555 2.72 LINK OE1 GLU A 156 CA CA A1512 1555 1555 1.97 LINK OD2 ASP A 289 CA CA A1514 1555 1555 3.02 LINK OD1 ASP A 289 CA CA A1514 1555 1555 2.94 LINK OD1 ASP A 318 CA CA A1513 1555 1555 2.90 LINK O ASP A 318 CA CA A1513 1555 1555 2.94 LINK OD2 ASP A 321 CA CA A1513 1555 1555 2.76 LINK O1G DTP A1510 CA CA A1511 1555 1555 2.22 LINK O1B DTP A1510 CA CA A1511 1555 1555 2.34 LINK O1A DTP A1510 CA CA A1511 1555 1555 2.28 LINK O1A DTP A1510 CA CA A1512 1555 1555 2.30 LINK CA CA A1514 O HOH A2033 1555 1555 2.30 LINK OD2 ASP B 30 CA CA B1509 1555 1555 2.60 LINK OD1 ASP B 30 CA CA B1510 1555 1555 2.32 LINK OD2 ASP B 30 CA CA B1510 1555 1555 3.04 LINK O MET B 31 CA CA B1510 1555 1555 2.29 LINK O GLY B 98 CA CA B1512 1555 1555 2.64 LINK OD2 ASP B 155 CA CA B1509 1555 1555 2.55 LINK OD1 ASP B 155 CA CA B1510 1555 1555 2.36 LINK OE1 GLU B 156 CA CA B1509 1555 1555 2.39 LINK OD2 ASP B 289 CA CA B1513 1555 1555 2.69 LINK OD1 ASP B 289 CA CA B1513 1555 1555 2.89 LINK O GLY B 298 CA CA B1515 1555 1555 2.70 LINK O ASP B 318 CA CA B1514 1555 1555 2.43 LINK OD2 ASP B 321 CA CA B1514 1555 1555 2.55 LINK OE1 GLU B 325 CA CA B1515 1555 1555 3.00 LINK OE2 GLU B 417 CA CA B1512 1555 1555 2.52 LINK OE1 GLU B 417 CA CA B1512 1555 1555 3.02 LINK CA CA B1509 O1A DTP B1511 1555 1555 2.45 LINK CA CA B1509 O HOH B2020 1555 1555 2.48 LINK CA CA B1510 O2G DTP B1511 1555 1555 2.36 LINK CA CA B1510 O1A DTP B1511 1555 1555 2.22 LINK CA CA B1510 O1B DTP B1511 1555 1555 2.31 LINK N7 DG O 0 PT1 CPT O1014 1555 1555 2.14 LINK N7 DG O 2 PT1 CPT O1014 1555 1555 2.19 LINK N7 DG S 0 PT1 CPT S1014 1555 1555 2.14 LINK N7 DG S 2 PT1 CPT S1014 1555 1555 2.16 CISPEP 1 LYS A 279 PRO A 280 0 3.31 CISPEP 2 TYR A 494 PRO A 495 0 -3.31 CISPEP 3 LYS B 279 PRO B 280 0 0.16 CISPEP 4 TYR B 494 PRO B 495 0 -11.45 SITE 1 AC1 6 ASP B 30 ASP B 155 GLU B 156 CA B1510 SITE 2 AC1 6 DTP B1511 HOH B2020 SITE 1 AC2 5 ASP B 30 MET B 31 ASP B 155 CA B1509 SITE 2 AC2 5 DTP B1511 SITE 1 AC3 18 ASP A 30 MET A 31 ASN A 32 ALA A 33 SITE 2 AC3 18 PHE A 34 PHE A 35 ILE A 60 ALA A 61 SITE 3 AC3 18 TYR A 64 ARG A 67 ARG A 73 ASP A 155 SITE 4 AC3 18 LYS A 279 CA A1511 CA A1512 DT O -1 SITE 5 AC3 18 DG O 2 DC P 9 SITE 1 AC4 5 ASP A 30 MET A 31 ASP A 155 DTP A1510 SITE 2 AC4 5 CA A1512 SITE 1 AC5 5 ASP A 30 ASP A 155 GLU A 156 DTP A1510 SITE 2 AC5 5 CA A1511 SITE 1 AC6 20 ASP B 30 MET B 31 ASN B 32 ALA B 33 SITE 2 AC6 20 PHE B 34 PHE B 35 ILE B 60 ALA B 61 SITE 3 AC6 20 TYR B 64 ARG B 67 ARG B 73 ASP B 155 SITE 4 AC6 20 LYS B 279 CA B1509 CA B1510 HOH B2001 SITE 5 AC6 20 DT S -1 DG S 0 DG S 2 DC T 9 SITE 1 AC7 2 GLY B 98 GLU B 417 SITE 1 AC8 2 ASP A 318 ASP A 321 SITE 1 AC9 1 ASP B 289 SITE 1 BC1 2 ASP A 289 HOH A2033 SITE 1 BC2 2 ASP B 318 ASP B 321 SITE 1 BC3 2 GLY B 298 GLU B 325 SITE 1 BC4 3 DG O 0 DG O 2 DC O 3 SITE 1 BC5 4 DT S -1 DG S 0 DG S 2 DG T 8 CRYST1 103.240 103.240 292.740 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009686 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009686 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003416 0.00000 MTRIX1 1 -0.809200 -0.288800 0.511600 -2.26800 1 MTRIX2 1 -0.317300 -0.518000 -0.794300 1.10100 1 MTRIX3 1 0.494400 -0.805200 0.327500 1.71900 1