HEADER TRANSFERASE 21-SEP-09 2WTS TITLE CRYSTAL STRUCTURE OF SORTASE C-1 (SRTC-1) MUTANT H131D FROM S. TITLE 2 PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SORTASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 17-228; COMPND 5 SYNONYM: SORTASE C-1; COMPND 6 EC: 2.3.2.12; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: RIL; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PLIM KEYWDS TRANSFERASE, PILI, PATHOGENICITY EXPDTA X-RAY DIFFRACTION AUTHOR C.MANZANO,T.IZORE,V.JOB,A.M.DIGUILMI,A.DESSEN REVDAT 3 20-DEC-23 2WTS 1 REMARK REVDAT 2 15-MAY-19 2WTS 1 REMARK REVDAT 1 01-SEP-10 2WTS 0 JRNL AUTH C.MANZANO,T.IZORE,V.JOB,A.M.DI GUILMI,A.DESSEN JRNL TITL SORTASE ACTIVITY IS CONTROLLED BY A FLEXIBLE LID IN THE JRNL TITL 2 PILUS BIOGENESIS MECHANISM OF GRAM-POSITIVE PATHOGENS. JRNL REF BIOCHEMISTRY V. 48 10549 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19810750 JRNL DOI 10.1021/BI901261Y REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 98430 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5137 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7044 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 374 REMARK 3 BIN FREE R VALUE : 0.2690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3083 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 693 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.30000 REMARK 3 B22 (A**2) : -0.12000 REMARK 3 B33 (A**2) : 0.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.053 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.052 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.744 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3400 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4670 ; 1.406 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 468 ; 6.163 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 158 ;35.274 ;25.570 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 618 ;12.156 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.071 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2588 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1657 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2353 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 614 ; 0.219 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 82 ; 0.185 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 67 ; 0.162 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2157 ; 1.188 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3435 ; 1.754 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1392 ; 2.466 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1199 ; 3.504 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3549 ; 1.402 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 693 ; 4.536 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3303 ; 3.385 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2WTS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1290041210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98088 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99255 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2W1J REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL PH 8.5, 200 MM MGCL2 REMARK 280 HEXAHYDRATE, 30% W/V POLYETHYLENE GLYCOL 4000 AT 20C., REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.17400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.63900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.26150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.63900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.17400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.26150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, HIS 131 TO ASP REMARK 400 ENGINEERED RESIDUE IN CHAIN B, HIS 131 TO ASP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 GLU A 17 REMARK 465 SER A 18 REMARK 465 VAL A 216 REMARK 465 GLU A 217 REMARK 465 GLU A 218 REMARK 465 GLU A 219 REMARK 465 PHE A 220 REMARK 465 ILE A 221 REMARK 465 ALA A 222 REMARK 465 ALA A 223 REMARK 465 ASN A 224 REMARK 465 LYS A 225 REMARK 465 LEU A 226 REMARK 465 SER A 227 REMARK 465 HIS A 228 REMARK 465 GLY B 16 REMARK 465 GLU B 17 REMARK 465 SER B 18 REMARK 465 VAL B 216 REMARK 465 GLU B 217 REMARK 465 GLU B 218 REMARK 465 GLU B 219 REMARK 465 PHE B 220 REMARK 465 ILE B 221 REMARK 465 ALA B 222 REMARK 465 ALA B 223 REMARK 465 ASN B 224 REMARK 465 LYS B 225 REMARK 465 LEU B 226 REMARK 465 SER B 227 REMARK 465 HIS B 228 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 19 CB CG OD1 ND2 REMARK 470 GLN A 20 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 136 O HOH A 2238 1.51 REMARK 500 O HOH B 2070 O HOH B 2073 1.64 REMARK 500 O HOH B 2083 O HOH B 2086 1.77 REMARK 500 O HOH A 2228 O HOH A 2230 1.77 REMARK 500 O HOH A 2167 O HOH A 2168 1.80 REMARK 500 O HOH B 2210 O HOH B 2212 1.80 REMARK 500 O HOH A 2084 O HOH A 2228 1.82 REMARK 500 O HOH A 2274 O HOH A 2341 1.83 REMARK 500 O HOH B 2049 O HOH B 2050 1.92 REMARK 500 O HOH B 2086 O HOH B 2212 1.96 REMARK 500 O HOH B 2334 O HOH B 2335 1.97 REMARK 500 OD1 ASP A 177 O HOH A 2305 2.05 REMARK 500 OD1 ASN A 175 O HOH A 2297 2.07 REMARK 500 ND2 ASN A 175 O HOH A 2296 2.07 REMARK 500 O HOH B 2333 O HOH B 2334 2.09 REMARK 500 O2 GOL B 1216 O HOH B 2332 2.10 REMARK 500 O HOH A 2301 O HOH A 2302 2.11 REMARK 500 O HOH B 2327 O HOH B 2330 2.12 REMARK 500 O HOH B 2019 O HOH B 2029 2.14 REMARK 500 O HOH A 2340 O HOH A 2341 2.14 REMARK 500 CD2 HIS A 155 O HOH A 2179 2.14 REMARK 500 O HOH A 2292 O HOH A 2337 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2090 O HOH B 2074 2455 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 80 -1.93 72.79 REMARK 500 MET A 139 -124.73 44.85 REMARK 500 GLU B 80 -5.45 75.77 REMARK 500 MET B 139 -123.89 42.69 REMARK 500 ILE B 198 -54.62 -126.11 REMARK 500 ILE B 198 -51.60 -127.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2016 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A2020 DISTANCE = 7.14 ANGSTROMS REMARK 525 HOH A2024 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A2075 DISTANCE = 6.61 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ALA A 1216 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALA A 1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1215 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W1J RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF SORTASE C-1 (SRTC-1 ) FROM STREPTOCOCCUS REMARK 900 PNEUMONIAE DBREF 2WTS A 17 228 UNP Q97SB9 Q97SB9_STRPN 17 228 DBREF 2WTS B 17 228 UNP Q97SB9 Q97SB9_STRPN 17 228 SEQADV 2WTS GLY A 16 UNP Q97SB9 EXPRESSION TAG SEQADV 2WTS ASP A 131 UNP Q97SB9 HIS 131 ENGINEERED MUTATION SEQADV 2WTS GLY B 16 UNP Q97SB9 EXPRESSION TAG SEQADV 2WTS ASP B 131 UNP Q97SB9 HIS 131 ENGINEERED MUTATION SEQRES 1 A 213 GLY GLU SER ASN GLN GLN ILE ALA ASP PHE ASP LYS GLU SEQRES 2 A 213 LYS ALA THR LEU ASP GLU ALA ASP ILE ASP GLU ARG MET SEQRES 3 A 213 LYS LEU ALA GLN ALA PHE ASN ASP SER LEU ASN ASN VAL SEQRES 4 A 213 VAL SER GLY ASP PRO TRP SER GLU GLU MET LYS LYS LYS SEQRES 5 A 213 GLY ARG ALA GLU TYR ALA ARG MET LEU GLU ILE HIS GLU SEQRES 6 A 213 ARG MET GLY HIS VAL GLU ILE PRO VAL ILE ASP VAL ASP SEQRES 7 A 213 LEU PRO VAL TYR ALA GLY THR ALA GLU GLU VAL LEU GLN SEQRES 8 A 213 GLN GLY ALA GLY HIS LEU GLU GLY THR SER LEU PRO ILE SEQRES 9 A 213 GLY GLY ASN SER THR HIS ALA VAL ILE THR ALA ASP THR SEQRES 10 A 213 GLY LEU PRO THR ALA LYS MET PHE THR ASP LEU THR LYS SEQRES 11 A 213 LEU LYS VAL GLY ASP LYS PHE TYR VAL HIS ASN ILE LYS SEQRES 12 A 213 GLU VAL MET ALA TYR GLN VAL ASP GLN VAL LYS VAL ILE SEQRES 13 A 213 GLU PRO THR ASN PHE ASP ASP LEU LEU ILE VAL PRO GLY SEQRES 14 A 213 HIS ASP TYR VAL THR LEU LEU THR CYS THR PRO TYR MET SEQRES 15 A 213 ILE ASN THR HIS ARG LEU LEU VAL ARG GLY HIS ARG ILE SEQRES 16 A 213 PRO TYR VAL ALA GLU VAL GLU GLU GLU PHE ILE ALA ALA SEQRES 17 A 213 ASN LYS LEU SER HIS SEQRES 1 B 213 GLY GLU SER ASN GLN GLN ILE ALA ASP PHE ASP LYS GLU SEQRES 2 B 213 LYS ALA THR LEU ASP GLU ALA ASP ILE ASP GLU ARG MET SEQRES 3 B 213 LYS LEU ALA GLN ALA PHE ASN ASP SER LEU ASN ASN VAL SEQRES 4 B 213 VAL SER GLY ASP PRO TRP SER GLU GLU MET LYS LYS LYS SEQRES 5 B 213 GLY ARG ALA GLU TYR ALA ARG MET LEU GLU ILE HIS GLU SEQRES 6 B 213 ARG MET GLY HIS VAL GLU ILE PRO VAL ILE ASP VAL ASP SEQRES 7 B 213 LEU PRO VAL TYR ALA GLY THR ALA GLU GLU VAL LEU GLN SEQRES 8 B 213 GLN GLY ALA GLY HIS LEU GLU GLY THR SER LEU PRO ILE SEQRES 9 B 213 GLY GLY ASN SER THR HIS ALA VAL ILE THR ALA ASP THR SEQRES 10 B 213 GLY LEU PRO THR ALA LYS MET PHE THR ASP LEU THR LYS SEQRES 11 B 213 LEU LYS VAL GLY ASP LYS PHE TYR VAL HIS ASN ILE LYS SEQRES 12 B 213 GLU VAL MET ALA TYR GLN VAL ASP GLN VAL LYS VAL ILE SEQRES 13 B 213 GLU PRO THR ASN PHE ASP ASP LEU LEU ILE VAL PRO GLY SEQRES 14 B 213 HIS ASP TYR VAL THR LEU LEU THR CYS THR PRO TYR MET SEQRES 15 B 213 ILE ASN THR HIS ARG LEU LEU VAL ARG GLY HIS ARG ILE SEQRES 16 B 213 PRO TYR VAL ALA GLU VAL GLU GLU GLU PHE ILE ALA ALA SEQRES 17 B 213 ASN LYS LEU SER HIS HET GOL A1215 6 HET ALA A1216 5 HET GOL B1216 6 HET GOL B1217 6 HETNAM GOL GLYCEROL HETNAM ALA ALANINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 4 ALA C3 H7 N O2 FORMUL 7 HOH *693(H2 O) HELIX 1 1 ASN A 19 LEU A 32 1 14 HELIX 2 2 ASP A 33 SER A 50 1 18 HELIX 3 3 SER A 61 LYS A 66 1 6 HELIX 4 4 ALA A 73 GLU A 77 5 5 HELIX 5 5 PRO A 88 ASP A 91 5 4 HELIX 6 6 ALA A 101 GLN A 107 1 7 HELIX 7 7 PHE A 140 LEU A 146 5 7 HELIX 8 8 PHE A 176 LEU A 180 5 5 HELIX 9 9 ASN B 19 LEU B 32 1 14 HELIX 10 10 ASP B 33 SER B 50 1 18 HELIX 11 11 SER B 61 LYS B 66 1 6 HELIX 12 12 ALA B 73 GLU B 77 5 5 HELIX 13 13 PRO B 88 ASP B 91 5 4 HELIX 14 14 ALA B 101 GLN B 107 1 7 HELIX 15 15 PHE B 140 LEU B 146 5 7 HELIX 16 16 PHE B 176 LEU B 180 5 5 SHEET 1 AA 7 VAL A 92 LEU A 94 0 SHEET 2 AA 7 VAL A 85 ILE A 87 -1 O VAL A 85 N LEU A 94 SHEET 3 AA 7 LYS A 151 HIS A 155 -1 O TYR A 153 N GLU A 86 SHEET 4 AA 7 VAL A 160 ILE A 171 -1 O MET A 161 N VAL A 154 SHEET 5 AA 7 HIS A 201 ILE A 210 -1 O ARG A 202 N ILE A 171 SHEET 6 AA 7 ASP A 186 THR A 194 -1 O ASP A 186 N ARG A 209 SHEET 7 AA 7 THR A 124 THR A 129 1 O THR A 124 N TYR A 187 SHEET 1 AB 4 VAL A 92 LEU A 94 0 SHEET 2 AB 4 VAL A 85 ILE A 87 -1 O VAL A 85 N LEU A 94 SHEET 3 AB 4 LYS A 151 HIS A 155 -1 O TYR A 153 N GLU A 86 SHEET 4 AB 4 VAL A 160 ILE A 171 -1 O MET A 161 N VAL A 154 CISPEP 1 THR A 194 PRO A 195 0 -11.45 CISPEP 2 THR B 194 PRO B 195 0 -13.29 SITE 1 AC1 4 ASP A 131 THR A 132 CYS A 193 HOH A2352 SITE 1 AC2 13 LEU A 146 LYS A 147 VAL A 148 VAL A 168 SITE 2 AC2 13 LEU B 146 LYS B 147 VAL B 148 VAL B 168 SITE 3 AC2 13 HOH B2236 HOH B2332 HOH B2333 HOH B2334 SITE 4 AC2 13 HOH B2335 SITE 1 AC3 11 GLY B 121 ASN B 122 THR B 141 ASP B 142 SITE 2 AC3 11 THR B 144 TYR B 196 HOH B2336 HOH B2337 SITE 3 AC3 11 HOH B2338 HOH B2339 HOH B2340 SITE 1 AC4 5 HOH A2054 HOH A2349 HOH A2351 GLU B 86 SITE 2 AC4 5 TYR B 212 CRYST1 68.348 70.523 87.278 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014631 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011458 0.00000