HEADER TRANSFERASE 09-OCT-09 2WUU TITLE STRUCTURE OF N-MYRISTOYLTRANSFERASE FROM L. DONOVANI COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-MYRISTOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.1.97; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA DONOVANI; SOURCE 3 ORGANISM_TAXID: 5661; SOURCE 4 STRAIN: LV9; SOURCE 5 VARIANT: MHOM/ET/67/L28; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PRARES; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-BASED KEYWDS TRANSFERASE, ACYLTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.A.BRANNIGAN,B.A.SMITH,Z.YU,M.R.HODGKINSON,R.J.LEATHERBARROW, AUTHOR 2 E.W.TATE,A.M.BRZOZOWSKI,D.F.SMITH,A.J.WILKINSON REVDAT 6 20-DEC-23 2WUU 1 REMARK REVDAT 5 18-JUL-12 2WUU 1 REMARK VERSN HET HETNAM REVDAT 5 2 1 FORMUL HETATM REVDAT 4 02-MAR-10 2WUU 1 JRNL REMARK REVDAT 3 02-FEB-10 2WUU 1 REMARK REVDAT 2 12-JAN-10 2WUU 1 JRNL REVDAT 1 01-DEC-09 2WUU 0 JRNL AUTH J.A.BRANNIGAN,B.A.SMITH,Z.YU,A.M.BRZOZOWSKI,M.R.HODGKINSON, JRNL AUTH 2 A.MAROOF,H.P.PRICE,F.MEIER,R.J.LEATHERBARROW,E.W.TATE, JRNL AUTH 3 D.F.SMITH,A.J.WILKINSON JRNL TITL N-MYRISTOYLTRANSFERASE FROM LEISHMANIA DONOVANI: STRUCTURAL JRNL TITL 2 AND FUNCTIONAL CHARACTERISATION OF A POTENTIAL DRUG TARGET JRNL TITL 3 FOR VISCERAL LEISHMANIASIS. JRNL REF J.MOL.BIOL. V. 396 985 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20036251 JRNL DOI 10.1016/J.JMB.2009.12.032 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 68150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3603 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3986 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 225 REMARK 3 BIN FREE R VALUE : 0.3510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3285 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 378 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : -0.98000 REMARK 3 B33 (A**2) : 0.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.062 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3595 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4928 ; 2.077 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 6.106 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;33.107 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 587 ;13.913 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;17.166 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 526 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2791 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2121 ; 2.422 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3477 ; 3.453 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1474 ; 4.856 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1433 ; 6.538 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3595 ; 2.617 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 421 REMARK 3 ORIGIN FOR THE GROUP (A): -8.4110 -23.9183 18.2120 REMARK 3 T TENSOR REMARK 3 T11: 0.0040 T22: 0.0244 REMARK 3 T33: 0.0041 T12: 0.0019 REMARK 3 T13: 0.0012 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.2160 L22: 0.7819 REMARK 3 L33: 0.1272 L12: 0.1849 REMARK 3 L13: 0.0612 L23: 0.0961 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: 0.0048 S13: 0.0024 REMARK 3 S21: -0.0465 S22: 0.0094 S23: 0.0044 REMARK 3 S31: -0.0082 S32: 0.0109 S33: -0.0093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES RESIDUAL ONLY. DISORDERED RESIDUES 1-10, 83- REMARK 3 85, 334-339.SOME SIDECHAINS BUILT WITH ZERO OCCUPANCY REMARK 4 REMARK 4 2WUU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1290041344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68150 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1NMT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M LICL, 0.05 M NACITRATE PH 4.0, REMARK 280 20% (W/V) PEG 6000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.98500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.17750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.06550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.17750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.98500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.06550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 ASN A 4 REMARK 465 PRO A 5 REMARK 465 SER A 6 REMARK 465 ASN A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 ALA A 10 REMARK 465 ASP A 83 REMARK 465 ASP A 84 REMARK 465 ASP A 85 REMARK 465 GLY A 334 REMARK 465 ASN A 335 REMARK 465 SER A 336 REMARK 465 ASN A 337 REMARK 465 TYR A 338 REMARK 465 ASN A 339 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 25 CG OD1 OD2 REMARK 480 GLU A 26 CB CG REMARK 480 GLU A 28 CB CG REMARK 480 LYS A 29 CG CD CE NZ REMARK 480 GLU A 64 CG CD OE1 OE2 REMARK 480 GLU A 82 C CB REMARK 480 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 480 GLN A 98 CG CD OE1 NE2 REMARK 480 GLN A 146 CD OE1 NE2 REMARK 480 LYS A 148 CE NZ REMARK 480 GLU A 152 CD OE1 OE2 REMARK 480 GLU A 153 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2123 O HOH A 2277 1.92 REMARK 500 NE2 GLN A 358 O HOH A 2320 2.00 REMARK 500 O HOH A 2074 O HOH A 2154 2.09 REMARK 500 OD1 ASN A 261 NE2 GLN A 358 2.10 REMARK 500 OE2 GLU A 177 O HOH A 2165 2.13 REMARK 500 OH TYR A 217 O HOH A 2201 2.16 REMARK 500 ND2 ASN A 91 O HOH A 2092 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 25 CB ASP A 25 CG 0.463 REMARK 500 GLU A 26 CG GLU A 26 CD 0.098 REMARK 500 GLU A 64 CB GLU A 64 CG -0.254 REMARK 500 GLU A 82 C GLU A 82 O -0.423 REMARK 500 GLN A 98 CB GLN A 98 CG -0.243 REMARK 500 GLU A 152 CG GLU A 152 CD -0.180 REMARK 500 VAL A 308 CB VAL A 308 CG2 -0.169 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 25 CB - CG - OD1 ANGL. DEV. = -15.0 DEGREES REMARK 500 ASP A 25 CB - CG - OD2 ANGL. DEV. = 19.6 DEGREES REMARK 500 VAL A 31 CB - CA - C ANGL. DEV. = 14.1 DEGREES REMARK 500 MET A 36 CG - SD - CE ANGL. DEV. = -12.5 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 305 CB - CG - OD2 ANGL. DEV. = -6.0 DEGREES REMARK 500 VAL A 308 CB - CA - C ANGL. DEV. = -13.0 DEGREES REMARK 500 VAL A 308 CA - CB - CG2 ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 370 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 31 -80.51 -92.91 REMARK 500 MET A 135 32.19 -153.26 REMARK 500 ILE A 163 -169.84 -122.52 REMARK 500 VAL A 307 -64.23 -129.79 REMARK 500 HIS A 347 -130.22 -108.67 REMARK 500 GLU A 379 40.25 -71.76 REMARK 500 LEU A 381 -139.85 51.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 (2-OXO)PENTADECYL-COA (NHW): NON-HYDROLYSABLE ANALOGUE OF REMARK 600 MYRISTOYLCOA COFACTOR REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NHW A 1422 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE FOR THIS PROTEIN IS CURRENTLY DEPOSITED ONLY REMARK 999 IN THE EMBL NUCLEOTIDE DATA BANK WITH ACCESSION FN555136 REMARK 999 AND IS NOT CURRENTLY AVAILABLE FROM UNIPROT. DBREF 2WUU A 1 421 UNP A4I7H1 A4I7H1_LEIIN 1 421 SEQRES 1 A 421 MET SER ARG ASN PRO SER ASN SER ASP ALA ALA HIS ALA SEQRES 2 A 421 PHE TRP SER THR GLN PRO VAL PRO GLN THR GLU ASP GLU SEQRES 3 A 421 THR GLU LYS ILE VAL PHE ALA GLY PRO MET ASP GLU PRO SEQRES 4 A 421 LYS THR VAL ALA ASP ILE PRO GLU GLU PRO TYR PRO ILE SEQRES 5 A 421 ALA SER THR PHE GLU TRP TRP THR PRO ASN MET GLU ALA SEQRES 6 A 421 ALA ASP ASP ILE HIS ALA ILE TYR GLU LEU LEU ARG ASP SEQRES 7 A 421 ASN TYR VAL GLU ASP ASP ASP SER MET PHE ARG PHE ASN SEQRES 8 A 421 TYR SER GLU GLU PHE LEU GLN TRP ALA LEU CYS PRO PRO SEQRES 9 A 421 SER TYR ILE PRO ASP TRP HIS VAL ALA VAL ARG ARG LYS SEQRES 10 A 421 ALA ASP LYS LYS LEU LEU ALA PHE ILE ALA GLY VAL PRO SEQRES 11 A 421 VAL THR LEU ARG MET GLY THR PRO LYS TYR MET LYS VAL SEQRES 12 A 421 LYS ALA GLN GLU LYS GLY GLN GLU GLU GLU ALA ALA LYS SEQRES 13 A 421 TYR ASP ALA PRO ARG HIS ILE CYS GLU ILE ASN PHE LEU SEQRES 14 A 421 CYS VAL HIS LYS GLN LEU ARG GLU LYS ARG LEU ALA PRO SEQRES 15 A 421 ILE LEU ILE LYS GLU VAL THR ARG ARG VAL ASN ARG THR SEQRES 16 A 421 ASN VAL TRP GLN ALA VAL TYR THR ALA GLY VAL LEU LEU SEQRES 17 A 421 PRO THR PRO TYR ALA SER GLY GLN TYR PHE HIS ARG SER SEQRES 18 A 421 LEU ASN PRO GLU LYS LEU VAL GLU ILE ARG PHE SER GLY SEQRES 19 A 421 ILE PRO ALA GLN TYR GLN LYS PHE GLN ASN PRO MET ALA SEQRES 20 A 421 MET LEU LYS ARG ASN TYR GLN LEU PRO ASN ALA PRO LYS SEQRES 21 A 421 ASN SER GLY LEU ARG GLU MET LYS PRO SER ASP VAL PRO SEQRES 22 A 421 GLN VAL ARG ARG ILE LEU MET ASN TYR LEU ASP ASN PHE SEQRES 23 A 421 ASP VAL GLY PRO VAL PHE SER ASP ALA GLU ILE SER HIS SEQRES 24 A 421 TYR LEU LEU PRO ARG ASP GLY VAL VAL PHE THR TYR VAL SEQRES 25 A 421 VAL GLU ASN ASP LYS LYS VAL THR ASP PHE PHE SER PHE SEQRES 26 A 421 TYR ARG ILE PRO SER THR VAL ILE GLY ASN SER ASN TYR SEQRES 27 A 421 ASN ILE LEU ASN ALA ALA TYR VAL HIS TYR TYR ALA ALA SEQRES 28 A 421 THR SER MET PRO LEU HIS GLN LEU ILE LEU ASP LEU LEU SEQRES 29 A 421 ILE VAL ALA HIS SER ARG GLY PHE ASP VAL CYS ASN MET SEQRES 30 A 421 VAL GLU ILE LEU ASP ASN ARG SER PHE VAL GLU GLN LEU SEQRES 31 A 421 LYS PHE GLY ALA GLY ASP GLY HIS LEU ARG TYR TYR PHE SEQRES 32 A 421 TYR ASN TRP ALA TYR PRO LYS ILE LYS PRO SER GLN VAL SEQRES 33 A 421 ALA LEU VAL MET LEU HET NHW A1422 64 HETNAM NHW 2-OXOPENTADECYL-COA FORMUL 2 NHW C36 H64 N7 O17 P3 S FORMUL 3 HOH *378(H2 O) HELIX 1 1 PHE A 14 GLN A 18 5 5 HELIX 2 2 THR A 23 LYS A 29 1 7 HELIX 3 3 THR A 41 ILE A 45 5 5 HELIX 4 4 ALA A 65 TYR A 80 1 16 HELIX 5 5 SER A 93 CYS A 102 1 10 HELIX 6 6 ILE A 107 HIS A 111 5 5 HELIX 7 7 PRO A 138 LYS A 148 1 11 HELIX 8 8 GLN A 150 LYS A 156 1 7 HELIX 9 9 LYS A 173 ARG A 176 5 4 HELIX 10 10 ARG A 179 THR A 195 1 17 HELIX 11 11 ASN A 223 ILE A 230 1 8 HELIX 12 12 PRO A 236 GLN A 240 5 5 HELIX 13 13 ASN A 244 GLN A 254 1 11 HELIX 14 14 LYS A 268 SER A 270 5 3 HELIX 15 15 ASP A 271 ASP A 284 1 14 HELIX 16 16 SER A 293 LEU A 302 1 10 HELIX 17 17 PRO A 355 ARG A 370 1 16 HELIX 18 18 ASP A 382 VAL A 387 5 6 HELIX 19 19 LYS A 412 GLN A 415 5 4 SHEET 1 AA 6 PHE A 56 TRP A 59 0 SHEET 2 AA 6 VAL A 112 ARG A 116 -1 O ALA A 113 N TRP A 59 SHEET 3 AA 6 LEU A 122 LEU A 133 -1 N LEU A 123 O VAL A 114 SHEET 4 AA 6 ARG A 161 VAL A 171 -1 O ARG A 161 N LEU A 133 SHEET 5 AA 6 ALA A 200 ALA A 204 1 O VAL A 201 N ILE A 166 SHEET 6 AA 6 ARG A 400 TYR A 404 -1 O ARG A 400 N ALA A 204 SHEET 1 AB 4 PHE A 88 PHE A 90 0 SHEET 2 AB 4 LYS A 318 VAL A 332 -1 O THR A 331 N ARG A 89 SHEET 3 AB 4 VAL A 308 ASN A 315 -1 O PHE A 309 N PHE A 325 SHEET 4 AB 4 ARG A 265 GLU A 266 -1 O ARG A 265 N VAL A 312 SHEET 1 AC 2 PHE A 88 PHE A 90 0 SHEET 2 AC 2 LYS A 318 VAL A 332 -1 O THR A 331 N ARG A 89 CISPEP 1 PRO A 209 THR A 210 0 -8.90 SITE 1 AC1 35 HIS A 12 ALA A 13 PHE A 14 TRP A 15 SITE 2 AC1 35 ASN A 79 TYR A 80 VAL A 81 ASN A 167 SITE 3 AC1 35 PHE A 168 LEU A 169 CYS A 170 VAL A 171 SITE 4 AC1 35 ARG A 176 GLU A 177 LYS A 178 ARG A 179 SITE 5 AC1 35 LEU A 180 ALA A 181 PRO A 182 THR A 189 SITE 6 AC1 35 VAL A 192 TRP A 198 ALA A 200 TYR A 202 SITE 7 AC1 35 THR A 203 LEU A 208 TYR A 404 HOH A2164 SITE 8 AC1 35 HOH A2165 HOH A2373 HOH A2374 HOH A2375 SITE 9 AC1 35 HOH A2376 HOH A2377 HOH A2378 CRYST1 45.970 90.131 92.355 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021753 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011095 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010828 0.00000