HEADER CELL ADHESION 26-NOV-09 2WZA TITLE TWO INTRAMOLECULAR ISOPEPTIDE BONDS ARE IDENTIFIED IN THE CRYSTAL TITLE 2 STRUCTURE OF THE STREPTOCOCCUS GORDONII SSPB C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGGLUTININ RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, RESIDUES 1061-1413; COMPND 5 SYNONYM: SSP-5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS GORDONII; SOURCE 3 ORGANISM_TAXID: 1302; SOURCE 4 STRAIN: M5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-VECTOR KEYWDS CELL ADHESION, CELL WALL, ANTIGEN I/II, PEPTIDOGLYCAN-ANCHOR EXPDTA X-RAY DIFFRACTION AUTHOR N.FORSGREN,R.J.LAMONT,K.PERSSON REVDAT 5 20-DEC-23 2WZA 1 REMARK LINK REVDAT 4 17-JAN-18 2WZA 1 REMARK REVDAT 3 13-JUL-11 2WZA 1 VERSN REVDAT 2 23-MAR-10 2WZA 1 JRNL REMARK REVDAT 1 16-FEB-10 2WZA 0 JRNL AUTH N.FORSGREN,R.J.LAMONT,K.PERSSON JRNL TITL TWO INTRAMOLECULAR ISOPEPTIDE BONDS ARE IDENTIFIED IN THE JRNL TITL 2 CRYSTAL STRUCTURE OF THE STREPTOCOCCUS GORDONII SSPB JRNL TITL 3 C-TERMINAL DOMAIN. JRNL REF J.MOL.BIOL. V. 397 740 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20138058 JRNL DOI 10.1016/J.JMB.2010.01.065 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.100 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 20786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1073 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5873 - 4.1630 0.99 2633 141 0.1870 0.2419 REMARK 3 2 4.1630 - 3.3047 1.00 2533 137 0.1732 0.2232 REMARK 3 3 3.3047 - 2.8870 0.99 2487 136 0.1880 0.2451 REMARK 3 4 2.8870 - 2.6231 0.98 2452 143 0.1999 0.2470 REMARK 3 5 2.6231 - 2.4351 0.98 2418 120 0.1947 0.3111 REMARK 3 6 2.4351 - 2.2916 0.98 2422 132 0.2060 0.2459 REMARK 3 7 2.2916 - 2.1768 0.96 2363 125 0.2044 0.3062 REMARK 3 8 2.1768 - 2.0820 0.97 2405 139 0.2141 0.2976 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 47.97 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.50250 REMARK 3 B22 (A**2) : -7.44280 REMARK 3 B33 (A**2) : 5.66570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2711 REMARK 3 ANGLE : 1.408 3677 REMARK 3 CHIRALITY : 0.098 417 REMARK 3 PLANARITY : 0.006 478 REMARK 3 DIHEDRAL : 18.463 977 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: RESID 1076:1253 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1943 31.5002 13.6252 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.0892 REMARK 3 T33: 0.1337 T12: 0.0021 REMARK 3 T13: -0.0233 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 0.1700 L22: 0.3551 REMARK 3 L33: 0.4181 L12: 0.2542 REMARK 3 L13: -0.1205 L23: -0.0651 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: -0.0223 S13: 0.0827 REMARK 3 S21: -0.0082 S22: -0.0594 S23: 0.2022 REMARK 3 S31: -0.0042 S32: -0.0778 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: RESID 1254:1413 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2400 -8.7782 -0.3610 REMARK 3 T TENSOR REMARK 3 T11: 0.0212 T22: 0.0367 REMARK 3 T33: 0.0218 T12: 0.0018 REMARK 3 T13: 0.0112 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.5459 L22: 0.4743 REMARK 3 L33: 0.6080 L12: 0.2447 REMARK 3 L13: 0.3955 L23: -0.0024 REMARK 3 S TENSOR REMARK 3 S11: -0.0093 S12: 0.0293 S13: 0.0156 REMARK 3 S21: -0.0031 S22: 0.0145 S23: 0.0048 REMARK 3 S31: 0.0451 S32: 0.0253 S33: 0.0276 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE LINKER RESIDUES AND RESIDUES 1061 REMARK 3 -1075 ARE DISORDERED AND NOT INCLUDED IN THE MODEL ONE REMARK 3 ISOPEPTIDE BOND IS FORMED BETWEEN ASN1393 AND LYS1259 AND ONE REMARK 3 ISOPEPTIDE BOND BETWEEN ASN1232 AND LYS1082 REMARK 4 REMARK 4 2WZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1290041843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21137 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 42.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.090 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.86 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WOY REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2, 0.1 M HEPES, PH 7.5, 20% REMARK 280 (W/V) PEG4000. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.37500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.71500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.71500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.37500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1040 REMARK 465 LYS A 1041 REMARK 465 PRO A 1042 REMARK 465 MET A 1043 REMARK 465 SER A 1044 REMARK 465 ASP A 1045 REMARK 465 TYR A 1046 REMARK 465 ASP A 1047 REMARK 465 ILE A 1048 REMARK 465 PRO A 1049 REMARK 465 THR A 1050 REMARK 465 THR A 1051 REMARK 465 GLU A 1052 REMARK 465 ASN A 1053 REMARK 465 LEU A 1054 REMARK 465 TYR A 1055 REMARK 465 PHE A 1056 REMARK 465 GLN A 1057 REMARK 465 GLY A 1058 REMARK 465 ALA A 1059 REMARK 465 MET A 1060 REMARK 465 VAL A 1061 REMARK 465 THR A 1062 REMARK 465 THR A 1063 REMARK 465 PRO A 1064 REMARK 465 GLY A 1065 REMARK 465 LYS A 1066 REMARK 465 PRO A 1067 REMARK 465 ASN A 1068 REMARK 465 ASP A 1069 REMARK 465 PRO A 1070 REMARK 465 ASP A 1071 REMARK 465 ASN A 1072 REMARK 465 PRO A 1073 REMARK 465 ASN A 1074 REMARK 465 ASN A 1075 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A1232 ND2 REMARK 470 ASN A1393 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 1259 CG ASN A 1393 1.86 REMARK 500 NZ LYS A 1082 CG ASN A 1232 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A1269 135.61 -26.50 REMARK 500 GLN A1275 -154.32 -116.55 REMARK 500 ASP A1351 88.33 -161.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A1077 O REMARK 620 2 ASP A1110 OD2 79.2 REMARK 620 3 ASP A1110 OD1 123.9 49.7 REMARK 620 4 ASP A1112 OD1 142.9 117.8 68.8 REMARK 620 5 GLN A1113 OE1 77.7 82.4 74.6 73.0 REMARK 620 6 ASP A1332 O 89.6 163.0 145.3 78.7 107.9 REMARK 620 7 HOH A2005 O 79.4 81.7 109.3 132.8 154.1 83.7 REMARK 620 8 HOH A2022 O 131.2 96.7 82.5 81.9 150.7 81.0 52.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2414 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1133 OD1 REMARK 620 2 TYR A1134 O 98.2 REMARK 620 3 GLU A1136 OE1 174.9 78.3 REMARK 620 4 LYS A1186 O 88.1 168.4 94.7 REMARK 620 5 ALA A1188 O 89.1 89.2 94.5 100.7 REMARK 620 6 HOH A2040 O 84.8 85.6 91.2 85.2 171.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A2415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A1308 OD1 REMARK 620 2 TYR A1309 O 103.4 REMARK 620 3 GLN A1311 OE1 173.8 81.1 REMARK 620 4 ASN A1354 O 96.8 135.3 82.6 REMARK 620 5 GLY A1355 O 77.1 77.1 108.2 69.1 REMARK 620 6 HOH A2037 O 84.8 82.4 91.7 139.5 148.4 REMARK 620 7 HOH A2118 O 83.1 150.3 90.9 70.9 132.4 69.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WOY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF STREPTOCOCCUS REMARK 900 GORDONII SURFACE PROTEIN SSPB REMARK 900 RELATED ID: 2WD6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE VARIABLE DOMAIN OF THE STREPTOCOCCUS REMARK 900 GORDONII SURFACE PROTEIN SSPB REMARK 900 RELATED ID: 2WQS RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF STREPTOCOCCUS REMARK 900 GORDONII SURFACE PROTEIN SSPB DBREF 2WZA A 1061 1413 UNP P16952 SSP5_STRGN 1061 1413 SEQADV 2WZA MET A 1040 UNP P16952 EXPRESSION TAG SEQADV 2WZA LYS A 1041 UNP P16952 EXPRESSION TAG SEQADV 2WZA PRO A 1042 UNP P16952 EXPRESSION TAG SEQADV 2WZA MET A 1043 UNP P16952 EXPRESSION TAG SEQADV 2WZA SER A 1044 UNP P16952 EXPRESSION TAG SEQADV 2WZA ASP A 1045 UNP P16952 EXPRESSION TAG SEQADV 2WZA TYR A 1046 UNP P16952 EXPRESSION TAG SEQADV 2WZA ASP A 1047 UNP P16952 EXPRESSION TAG SEQADV 2WZA ILE A 1048 UNP P16952 EXPRESSION TAG SEQADV 2WZA PRO A 1049 UNP P16952 EXPRESSION TAG SEQADV 2WZA THR A 1050 UNP P16952 EXPRESSION TAG SEQADV 2WZA THR A 1051 UNP P16952 EXPRESSION TAG SEQADV 2WZA GLU A 1052 UNP P16952 EXPRESSION TAG SEQADV 2WZA ASN A 1053 UNP P16952 EXPRESSION TAG SEQADV 2WZA LEU A 1054 UNP P16952 EXPRESSION TAG SEQADV 2WZA TYR A 1055 UNP P16952 EXPRESSION TAG SEQADV 2WZA PHE A 1056 UNP P16952 EXPRESSION TAG SEQADV 2WZA GLN A 1057 UNP P16952 EXPRESSION TAG SEQADV 2WZA GLY A 1058 UNP P16952 EXPRESSION TAG SEQADV 2WZA ALA A 1059 UNP P16952 EXPRESSION TAG SEQADV 2WZA MET A 1060 UNP P16952 EXPRESSION TAG SEQRES 1 A 374 MET LYS PRO MET SER ASP TYR ASP ILE PRO THR THR GLU SEQRES 2 A 374 ASN LEU TYR PHE GLN GLY ALA MET VAL THR THR PRO GLY SEQRES 3 A 374 LYS PRO ASN ASP PRO ASP ASN PRO ASN ASN ASN TYR ILE SEQRES 4 A 374 LYS PRO THR LYS VAL ASN LYS ASN LYS GLU GLY LEU ASN SEQRES 5 A 374 ILE ASP GLY LYS GLU VAL LEU ALA GLY SER THR ASN TYR SEQRES 6 A 374 TYR GLU LEU THR TRP ASP LEU ASP GLN TYR LYS GLY ASP SEQRES 7 A 374 LYS SER SER LYS GLU ALA ILE GLN ASN GLY PHE TYR TYR SEQRES 8 A 374 VAL ASP ASP TYR PRO GLU GLU ALA LEU ASP VAL ARG PRO SEQRES 9 A 374 ASP LEU VAL LYS VAL ALA ASP GLU LYS GLY ASN GLN VAL SEQRES 10 A 374 SER GLY VAL SER VAL GLN GLN TYR ASP SER LEU GLU ALA SEQRES 11 A 374 ALA PRO LYS LYS VAL GLN ASP LEU LEU LYS LYS ALA ASN SEQRES 12 A 374 ILE THR VAL LYS GLY ALA PHE GLN LEU PHE SER ALA ASP SEQRES 13 A 374 ASN PRO GLU GLU PHE TYR LYS GLN TYR VAL ALA THR GLY SEQRES 14 A 374 THR SER LEU VAL ILE THR ASP PRO MET THR VAL LYS SER SEQRES 15 A 374 GLU PHE GLY LYS THR GLY GLY LYS TYR GLU ASN LYS ALA SEQRES 16 A 374 TYR GLN ILE ASP PHE GLY ASN GLY TYR ALA THR GLU VAL SEQRES 17 A 374 VAL VAL ASN ASN VAL PRO LYS ILE THR PRO LYS LYS ASP SEQRES 18 A 374 VAL THR VAL SER LEU ASP PRO THR SER GLU ASN LEU ASP SEQRES 19 A 374 GLY GLN THR VAL GLN LEU TYR GLN THR PHE ASN TYR ARG SEQRES 20 A 374 LEU ILE GLY GLY LEU ILE PRO GLN ASN HIS SER GLU GLU SEQRES 21 A 374 LEU GLU ASP TYR SER PHE VAL ASP ASP TYR ASP GLN ALA SEQRES 22 A 374 GLY ASP GLN TYR THR GLY ASN TYR LYS THR PHE SER SER SEQRES 23 A 374 LEU ASN LEU THR MET LYS ASP GLY SER VAL ILE LYS ALA SEQRES 24 A 374 GLY THR ASP LEU THR SER GLN THR THR ALA GLU THR ASP SEQRES 25 A 374 ALA THR ASN GLY ILE VAL THR VAL ARG PHE LYS GLU ASP SEQRES 26 A 374 PHE LEU GLN LYS ILE SER LEU ASP SER PRO PHE GLN ALA SEQRES 27 A 374 GLU THR TYR LEU GLN MET ARG ARG ILE ALA ILE GLY THR SEQRES 28 A 374 PHE GLU ASN THR TYR VAL ASN THR VAL ASN LYS VAL ALA SEQRES 29 A 374 TYR ALA SER ASN THR VAL ARG THR THR THR HET CA A2414 1 HET CA A2415 1 HET CA A2416 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 HOH *138(H2 O) HELIX 1 1 LEU A 1111 LYS A 1115 5 5 HELIX 2 2 SER A 1120 GLN A 1125 1 6 HELIX 3 3 PRO A 1143 VAL A 1146 5 4 HELIX 4 4 PRO A 1171 ALA A 1181 1 11 HELIX 5 5 ASN A 1196 TYR A 1204 1 9 HELIX 6 6 GLU A 1222 GLY A 1227 1 6 HELIX 7 7 LEU A 1342 SER A 1344 5 3 HELIX 8 8 LYS A 1362 GLN A 1367 1 6 SHEET 1 AA 4 THR A1081 VAL A1083 0 SHEET 2 AA 4 THR A1102 TRP A1109 -1 O GLU A1106 N VAL A1083 SHEET 3 AA 4 LEU A1211 VAL A1219 -1 O LEU A1211 N TRP A1109 SHEET 4 AA 4 LYS A1147 ASP A1150 -1 O LYS A1147 N THR A1214 SHEET 1 AB 4 THR A1081 VAL A1083 0 SHEET 2 AB 4 THR A1102 TRP A1109 -1 O GLU A1106 N VAL A1083 SHEET 3 AB 4 LEU A1211 VAL A1219 -1 O LEU A1211 N TRP A1109 SHEET 4 AB 4 LEU A1139 VAL A1141 -1 O ASP A1140 N THR A1218 SHEET 1 AC 2 LYS A1147 ASP A1150 0 SHEET 2 AC 2 LEU A1211 VAL A1219 -1 O VAL A1212 N ALA A1149 SHEET 1 AD 5 VAL A1159 TYR A1164 0 SHEET 2 AD 5 PHE A1189 ALA A1194 -1 O PHE A1189 N TYR A1164 SHEET 3 AD 5 PHE A1128 ASP A1133 -1 O PHE A1128 N ALA A1194 SHEET 4 AD 5 GLY A1228 ASP A1238 -1 O LYS A1233 N ASP A1133 SHEET 5 AD 5 ASN A1241 ALA A1244 1 O ASN A1241 N ASP A1238 SHEET 1 AE 5 VAL A1159 TYR A1164 0 SHEET 2 AE 5 PHE A1189 ALA A1194 -1 O PHE A1189 N TYR A1164 SHEET 3 AE 5 PHE A1128 ASP A1133 -1 O PHE A1128 N ALA A1194 SHEET 4 AE 5 GLY A1228 ASP A1238 -1 O LYS A1233 N ASP A1133 SHEET 5 AE 5 VAL A1248 VAL A1252 -1 O VAL A1248 N ASN A1232 SHEET 1 AF 2 ASN A1241 ALA A1244 0 SHEET 2 AF 2 GLY A1228 ASP A1238 1 O GLN A1236 N TYR A1243 SHEET 1 AG 4 LYS A1258 THR A1262 0 SHEET 2 AG 4 THR A1282 ILE A1288 -1 O ASN A1284 N THR A1262 SHEET 3 AG 4 ALA A1377 ARG A1385 -1 O THR A1379 N LEU A1287 SHEET 4 AG 4 ASP A1314 SER A1324 -1 O GLN A1315 N ARG A1384 SHEET 1 AH 5 THR A1346 ASP A1351 0 SHEET 2 AH 5 ILE A1356 PHE A1361 -1 O ILE A1356 N ASP A1351 SHEET 3 AH 5 TYR A1303 ASP A1308 -1 O TYR A1303 N PHE A1361 SHEET 4 AH 5 VAL A1396 VAL A1399 -1 O VAL A1396 N VAL A1306 SHEET 5 AH 5 VAL A1402 ALA A1405 -1 O VAL A1402 N VAL A1399 SHEET 1 AI 2 LEU A1328 THR A1329 0 SHEET 2 AI 2 VAL A1335 ILE A1336 -1 O ILE A1336 N LEU A1328 SHEET 1 AJ 2 GLY A1389 ASN A1393 0 SHEET 2 AJ 2 VAL A1409 THR A1413 -1 O VAL A1409 N ASN A1393 LINK O TYR A1077 CA CA A2416 1555 1555 2.43 LINK OD2 ASP A1110 CA CA A2416 1555 1555 2.46 LINK OD1 ASP A1110 CA CA A2416 1555 1555 2.69 LINK OD1 ASP A1112 CA CA A2416 1555 1555 2.46 LINK OE1 GLN A1113 CA CA A2416 1555 1555 2.49 LINK OD1 ASP A1133 CA CA A2414 1555 1555 2.46 LINK O TYR A1134 CA CA A2414 1555 1555 2.40 LINK OE1 GLU A1136 CA CA A2414 1555 1555 2.33 LINK O LYS A1186 CA CA A2414 1555 1555 2.26 LINK O ALA A1188 CA CA A2414 1555 1555 2.36 LINK OD1 ASP A1308 CA CA A2415 1555 1555 2.32 LINK O TYR A1309 CA CA A2415 1555 1555 2.47 LINK OE1 GLN A1311 CA CA A2415 1555 1555 2.55 LINK O ASP A1332 CA CA A2416 3655 1555 2.45 LINK O ASN A1354 CA CA A2415 1555 1555 2.45 LINK O GLY A1355 CA CA A2415 1555 1555 2.64 LINK O HOH A2005 CA CA A2416 1555 1555 2.64 LINK O HOH A2022 CA CA A2416 1555 1555 2.69 LINK O HOH A2037 CA CA A2415 4455 1555 2.43 LINK O HOH A2040 CA CA A2414 1555 1555 2.44 LINK O HOH A2118 CA CA A2415 1555 1555 2.50 CISPEP 1 ASN A 1076 TYR A 1077 0 -11.21 SITE 1 AC1 6 ASP A1133 TYR A1134 GLU A1136 LYS A1186 SITE 2 AC1 6 ALA A1188 HOH A2040 SITE 1 AC2 7 ASP A1308 TYR A1309 GLN A1311 ASN A1354 SITE 2 AC2 7 GLY A1355 HOH A2037 HOH A2118 SITE 1 AC3 7 TYR A1077 ASP A1110 ASP A1112 GLN A1113 SITE 2 AC3 7 ASP A1332 HOH A2005 HOH A2022 CRYST1 48.750 80.150 87.430 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011438 0.00000