HEADER PROTEIN BINDING 30-NOV-09 2WZK TITLE STRUCTURE OF THE CUL5 N-TERMINAL DOMAIN AT 2.05A RESOLUTION. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CULLIN-5; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL, RESIDUES 1-386; COMPND 5 SYNONYM: CUL-5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2 KEYWDS UBL CONJUGATION PATHWAY, HIV, PHOSPHOPROTEIN, ISOPEPTIDE BOND, KEYWDS 2 PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.R.C.MUNIZ,V.AYINAMPUDI,Y.ZHANG,J.J.BABON,A.CHAIKUAD,T.KROJER, AUTHOR 2 A.C.W.PIKE,M.VOLLMAR,F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 3 J.WEIGELT,C.BOUNTRA,A.N.BULLOCK REVDAT 7 08-MAY-24 2WZK 1 REMARK REVDAT 6 24-JAN-18 2WZK 1 JRNL REVDAT 5 28-AUG-13 2WZK 1 JRNL REVDAT 4 10-JUL-13 2WZK 1 JRNL REVDAT 3 03-JUL-13 2WZK 1 SOURCE AUTHOR JRNL REMARK REVDAT 3 2 1 HETATM REVDAT 2 05-DEC-12 2WZK 1 AUTHOR JRNL REMARK VERSN REVDAT 1 15-DEC-09 2WZK 0 JRNL AUTH J.R.C.MUNIZ,K.GUO,N.J.KERSHAW,V.AYINAMPUDI,F.VON DELFT, JRNL AUTH 2 J.J.BABON,A.N.BULLOCK JRNL TITL MOLECULAR ARCHITECTURE OF THE ANKYRIN SOCS BOX FAMILY OF JRNL TITL 2 CUL5-DEPENDENT E3 UBIQUITIN LIGASES JRNL REF J.MOL.BIOL. V. 425 3166 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23806657 JRNL DOI 10.1016/J.JMB.2013.06.015 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 25227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1280 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 13 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2805 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2177 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2672 REMARK 3 BIN R VALUE (WORKING SET) : 0.2156 REMARK 3 BIN FREE R VALUE : 0.2598 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.74 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 133 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2940 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 365 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.59560 REMARK 3 B22 (A**2) : -4.28760 REMARK 3 B33 (A**2) : 5.88320 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.280 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3033 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4092 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1086 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 88 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 429 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3033 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 400 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3905 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.94 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.09 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.26 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 12:18) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5212 16.0024 105.1300 REMARK 3 T TENSOR REMARK 3 T11: -0.1389 T22: 0.3229 REMARK 3 T33: -0.1703 T12: 0.0904 REMARK 3 T13: -0.0043 T23: -0.0610 REMARK 3 L TENSOR REMARK 3 L11: 0.0068 L22: 0.0098 REMARK 3 L33: 0.7177 L12: -1.7270 REMARK 3 L13: 1.4152 L23: 0.5386 REMARK 3 S TENSOR REMARK 3 S11: 0.0233 S12: 0.0490 S13: 0.0515 REMARK 3 S21: -0.1607 S22: 0.0235 S23: 0.0561 REMARK 3 S31: 0.0340 S32: 0.0115 S33: -0.0467 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 19:119) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3809 21.4183 122.7200 REMARK 3 T TENSOR REMARK 3 T11: -0.1347 T22: 0.0782 REMARK 3 T33: -0.1177 T12: 0.0793 REMARK 3 T13: -0.0025 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.5308 L22: 0.8661 REMARK 3 L33: 2.9850 L12: 0.1082 REMARK 3 L13: -0.4488 L23: 0.3880 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: 0.1969 S13: -0.0002 REMARK 3 S21: -0.0487 S22: -0.0468 S23: 0.0576 REMARK 3 S31: -0.3609 S32: -0.2952 S33: -0.0239 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 120:133) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9955 11.3088 130.1180 REMARK 3 T TENSOR REMARK 3 T11: -0.0032 T22: 0.1773 REMARK 3 T33: 0.0230 T12: 0.0299 REMARK 3 T13: -0.0607 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 0.0796 L22: 1.5755 REMARK 3 L33: 1.1981 L12: 0.1662 REMARK 3 L13: 1.6477 L23: 1.0111 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: -0.0332 S13: -0.0557 REMARK 3 S21: 0.0200 S22: 0.0025 S23: -0.0405 REMARK 3 S31: -0.0280 S32: 0.0509 S33: 0.0079 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 134:210) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8474 27.2189 144.9330 REMARK 3 T TENSOR REMARK 3 T11: -0.0422 T22: 0.0035 REMARK 3 T33: -0.0825 T12: -0.0267 REMARK 3 T13: 0.0263 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.1396 L22: 0.9608 REMARK 3 L33: 6.3746 L12: -0.3005 REMARK 3 L13: -1.5338 L23: 1.7276 REMARK 3 S TENSOR REMARK 3 S11: 0.2190 S12: -0.0368 S13: 0.0555 REMARK 3 S21: -0.0417 S22: -0.0983 S23: -0.1348 REMARK 3 S31: -0.2615 S32: 0.3408 S33: -0.1207 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 211:252) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8469 25.2856 165.9190 REMARK 3 T TENSOR REMARK 3 T11: -0.0577 T22: 0.0768 REMARK 3 T33: -0.1133 T12: -0.0994 REMARK 3 T13: 0.0072 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.8361 L22: 1.1942 REMARK 3 L33: 5.4855 L12: -0.3865 REMARK 3 L13: -1.1199 L23: 0.5278 REMARK 3 S TENSOR REMARK 3 S11: -0.0850 S12: -0.1206 S13: -0.1391 REMARK 3 S21: -0.0660 S22: -0.0938 S23: 0.0724 REMARK 3 S31: -0.1238 S32: -0.1999 S33: 0.1788 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 253:301) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3240 17.7993 174.8890 REMARK 3 T TENSOR REMARK 3 T11: 0.0401 T22: 0.1292 REMARK 3 T33: -0.1358 T12: -0.1453 REMARK 3 T13: -0.0227 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.8647 L22: 0.9832 REMARK 3 L33: 5.0321 L12: -0.1246 REMARK 3 L13: 0.1357 L23: -1.9585 REMARK 3 S TENSOR REMARK 3 S11: 0.1668 S12: -0.1186 S13: 0.0673 REMARK 3 S21: 0.0674 S22: 0.0073 S23: -0.1091 REMARK 3 S31: 0.5234 S32: -0.2436 S33: -0.1741 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 302:348) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6606 4.3703 197.4210 REMARK 3 T TENSOR REMARK 3 T11: -0.1137 T22: 0.1377 REMARK 3 T33: -0.1335 T12: -0.0612 REMARK 3 T13: -0.0521 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 0.0145 L22: 1.8205 REMARK 3 L33: 2.7597 L12: 0.0393 REMARK 3 L13: -0.3818 L23: -1.2024 REMARK 3 S TENSOR REMARK 3 S11: -0.1606 S12: -0.0530 S13: 0.0557 REMARK 3 S21: 0.0328 S22: 0.1218 S23: 0.0829 REMARK 3 S31: -0.4022 S32: 0.0870 S33: 0.0389 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 349:388) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5471 2.4024 193.2440 REMARK 3 T TENSOR REMARK 3 T11: -0.0839 T22: 0.0986 REMARK 3 T33: -0.1251 T12: -0.1722 REMARK 3 T13: -0.0737 T23: 0.0542 REMARK 3 L TENSOR REMARK 3 L11: 1.8849 L22: 2.8009 REMARK 3 L33: 2.1884 L12: -0.0034 REMARK 3 L13: -2.0760 L23: -2.1797 REMARK 3 S TENSOR REMARK 3 S11: -0.2292 S12: -0.1199 S13: 0.0079 REMARK 3 S21: -0.5804 S22: 0.4429 S23: 0.0371 REMARK 3 S31: 0.2459 S32: 0.0013 S33: -0.2137 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: IDEAL-DIST CONTACT TERM CONTACT SETUP. REMARK 3 ALL ATOMS HAVE CCP4 ATOM TYPE FROM LIBRARY. REMARK 4 REMARK 4 2WZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1290041887. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960, 0.98000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25439 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 33.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% JEFFAMINE ED 2001 PH 7.0, 0.1M REMARK 280 HEPES PH 6.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.09000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.77000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 98.77000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.09000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 341 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 345 TO ASP REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 LYS A 8 REMARK 465 ASN A 9 REMARK 465 LYS A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 122 REMARK 465 SER A 123 REMARK 465 SER A 124 REMARK 465 ASN A 125 REMARK 465 LYS A 126 REMARK 465 LYS A 127 REMARK 465 SER A 128 REMARK 465 ASN A 129 REMARK 465 TYR A 389 REMARK 465 PHE A 390 REMARK 465 GLN A 391 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 56 CE NZ REMARK 470 LYS A 74 CE NZ REMARK 470 LYS A 91 CE NZ REMARK 470 ARG A 98 CD NE CZ NH1 NH2 REMARK 470 GLU A 131 CG CD OE1 OE2 REMARK 470 LYS A 161 NZ REMARK 470 GLU A 170 CD OE1 OE2 REMARK 470 ASN A 190 CG OD1 ND2 REMARK 470 PRO A 191 CG CD REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 ARG A 199 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 204 CE NZ REMARK 470 ARG A 212 CD NE CZ NH1 NH2 REMARK 470 LYS A 232 CE NZ REMARK 470 LYS A 243 CD CE NZ REMARK 470 ARG A 252 CD NE CZ NH1 NH2 REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 ASN A 256 CG OD1 ND2 REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 LYS A 286 CE NZ REMARK 470 GLU A 291 CG CD OE1 OE2 REMARK 470 LYS A 312 CD CE NZ REMARK 470 LYS A 374 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 147 -72.34 -105.98 REMARK 500 ASN A 201 -72.67 -114.01 REMARK 500 ASN A 256 31.26 -89.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 190 12.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2009 DISTANCE = 7.23 ANGSTROMS REMARK 525 HOH A2028 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A2088 DISTANCE = 8.92 ANGSTROMS REMARK 525 HOH A2178 DISTANCE = 6.79 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1392 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1393 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ZKJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ANKYRIN REPEAT AND SOCS BOX- CONTAINING REMARK 900 PROTEIN 9 (ASB9) IN COMPLEX WITH ELONGINB AND ELONGINC DBREF 2WZK A 1 386 UNP Q9D5V5 CUL5_MOUSE 1 386 DBREF 2WZK A 387 391 PDB 2WZK 2WZK 387 391 SEQADV 2WZK ARG A 341 UNP Q9D5V5 VAL 341 ENGINEERED MUTATION SEQADV 2WZK ASP A 345 UNP Q9D5V5 LEU 345 ENGINEERED MUTATION SEQRES 1 A 391 MET ALA THR SER ASN LEU LEU LYS ASN LYS GLY SER LEU SEQRES 2 A 391 GLN PHE GLU ASP LYS TRP ASP PHE MET HIS PRO ILE VAL SEQRES 3 A 391 LEU LYS LEU LEU ARG GLN GLU SER VAL THR LYS GLN GLN SEQRES 4 A 391 TRP PHE ASP LEU PHE SER ASP VAL HIS ALA VAL CYS LEU SEQRES 5 A 391 TRP ASP ASP LYS GLY SER SER LYS ILE HIS GLN ALA LEU SEQRES 6 A 391 LYS GLU ASP ILE LEU GLU PHE ILE LYS GLN ALA GLN ALA SEQRES 7 A 391 ARG VAL LEU SER HIS GLN ASP ASP THR ALA LEU LEU LYS SEQRES 8 A 391 ALA TYR ILE VAL GLU TRP ARG LYS PHE PHE THR GLN CYS SEQRES 9 A 391 ASP ILE LEU PRO LYS PRO PHE CYS GLN LEU GLU VAL THR SEQRES 10 A 391 LEU LEU GLY LYS GLN SER SER ASN LYS LYS SER ASN MET SEQRES 11 A 391 GLU ASP SER ILE VAL ARG LYS LEU MET LEU ASP THR TRP SEQRES 12 A 391 ASN GLU SER ILE PHE SER ASN ILE LYS ASN ARG LEU GLN SEQRES 13 A 391 ASP SER ALA MET LYS LEU VAL HIS ALA GLU ARG LEU GLY SEQRES 14 A 391 GLU ALA PHE ASP SER GLN LEU VAL ILE GLY VAL ARG GLU SEQRES 15 A 391 SER TYR VAL ASN LEU CYS SER ASN PRO GLU ASP LYS LEU SEQRES 16 A 391 GLN ILE TYR ARG ASP ASN PHE GLU LYS ALA TYR LEU ASP SEQRES 17 A 391 SER THR GLU ARG PHE TYR ARG THR GLN ALA PRO SER TYR SEQRES 18 A 391 LEU GLN GLN ASN GLY VAL GLN ASN TYR MET LYS TYR ALA SEQRES 19 A 391 ASP ALA LYS LEU LYS GLU GLU GLU LYS ARG ALA LEU ARG SEQRES 20 A 391 TYR LEU GLU THR ARG ARG GLU CYS ASN SER VAL GLU ALA SEQRES 21 A 391 LEU MET GLU CYS CYS VAL ASN ALA LEU VAL THR SER PHE SEQRES 22 A 391 LYS GLU THR ILE LEU ALA GLU CYS GLN GLY MET ILE LYS SEQRES 23 A 391 ARG ASN GLU THR GLU LYS LEU HIS LEU MET PHE SER LEU SEQRES 24 A 391 MET ASP LYS VAL PRO ASN GLY ILE GLU PRO MET LEU LYS SEQRES 25 A 391 ASP LEU GLU GLU HIS ILE ILE SER ALA GLY LEU ALA ASP SEQRES 26 A 391 MET VAL ALA ALA ALA GLU THR ILE THR THR ASP SER GLU SEQRES 27 A 391 LYS TYR ARG GLU GLN LEU ASP THR LEU PHE ASN ARG PHE SEQRES 28 A 391 SER LYS LEU VAL LYS GLU ALA PHE GLN ASP ASP PRO ARG SEQRES 29 A 391 PHE LEU THR ALA ARG ASP LYS ALA TYR LYS ALA VAL VAL SEQRES 30 A 391 ASN ASP ALA THR ILE PHE LYS ALA GLU ASN LEU TYR PHE SEQRES 31 A 391 GLN HET EDO A1389 4 HET EDO A1390 4 HET EDO A1391 4 HET EDO A1392 4 HET EDO A1393 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 5(C2 H6 O2) FORMUL 7 HOH *365(H2 O) HELIX 1 1 GLN A 14 GLN A 32 1 19 HELIX 2 2 THR A 36 ASP A 54 1 19 HELIX 3 3 LYS A 56 SER A 82 1 27 HELIX 4 4 ASP A 85 CYS A 104 1 20 HELIX 5 5 PRO A 108 PRO A 110 5 3 HELIX 6 6 PHE A 111 VAL A 116 1 6 HELIX 7 7 SER A 133 ILE A 147 1 15 HELIX 8 8 ILE A 147 LEU A 168 1 22 HELIX 9 9 SER A 174 LEU A 187 1 14 HELIX 10 10 LEU A 195 ASN A 201 1 7 HELIX 11 11 ASN A 201 LEU A 249 1 49 HELIX 12 12 ASN A 256 VAL A 270 1 15 HELIX 13 13 PHE A 273 ALA A 279 1 7 HELIX 14 14 GLU A 280 ARG A 287 1 8 HELIX 15 15 GLU A 289 ASP A 301 1 13 HELIX 16 16 ILE A 307 ALA A 330 1 24 HELIX 17 17 GLU A 331 ILE A 333 5 3 HELIX 18 18 ASP A 336 GLN A 360 1 25 HELIX 19 19 ASP A 362 PHE A 383 1 22 SITE 1 AC1 2 ASP A 46 HOH A2363 SITE 1 AC2 6 HIS A 48 CYS A 51 GLN A 113 THR A 117 SITE 2 AC2 6 THR A 334 HOH A2365 SITE 1 AC3 1 ASP A 193 SITE 1 AC4 5 GLN A 282 GLU A 316 HIS A 317 SER A 320 SITE 2 AC4 5 HOH A2366 SITE 1 AC5 4 SER A 34 LYS A 66 HOH A2036 HOH A2087 CRYST1 30.180 64.500 197.540 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033135 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015504 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005062 0.00000