HEADER HYDROLASE 01-DEC-09 2WZN TITLE 3D STRUCTURE OF TET3 FROM PYROCOCCUS HORIKOSHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 354AA LONG HYPOTHETICAL OPERON PROTEIN FRV; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TET3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(RIL); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS PROTEASE, HYDROLASE, THERMOPHILIC, SELF-COMPARTMENTALISING EXPDTA X-RAY DIFFRACTION AUTHOR E.ROSENBAUM,M.A.DURA,F.M.VELLIEUX,B.FRANZETTI REVDAT 2 20-DEC-23 2WZN 1 REMARK LINK REVDAT 1 03-NOV-10 2WZN 0 SPRSDE 03-NOV-10 2WZN 2VPU JRNL AUTH M.A.DURA,E.ROSENBAUM,A.LARABI,F.GABEL,F.M.VELLIEUX, JRNL AUTH 2 B.FRANZETTI JRNL TITL THE STRUCTURAL AND BIOCHEMICAL CHARACTERIZATIONS OF A NOVEL JRNL TITL 2 TET PEPTIDASE COMPLEX FROM PYROCOCCUS HORIKOSHII REVEAL AN JRNL TITL 3 INTEGRATED PEPTIDE DEGRADATION SYSTEM IN HYPERTHERMOPHILIC JRNL TITL 4 ARCHAEA. JRNL REF MOL.MICROBIOL. V. 72 26 2009 JRNL REFN ISSN 0950-382X JRNL PMID 19291145 JRNL DOI 10.1111/J.1365-2958.2009.06600.X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.SCHOEHN,F.M.D.VELLIEUX,M.ASUNCION DURA,V.RECEVEUR-BRECHOT, REMARK 1 AUTH 2 C.M.S.FABRY,R.W.H.RUIGROK,C.EBEL,A.ROUSSEL,B.FRANZETTI REMARK 1 TITL AN ARCHAEAL PEPTIDASE ASSEMBLES INTO TWO DIFFERENT REMARK 1 TITL 2 QUATERNARY STRUCTURES: A TETRAHEDRON AND A GIANT OCTAHEDRON. REMARK 1 REF J.BIOL.CHEM. V. 281 36327 2006 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 16973604 REMARK 1 DOI 10.1074/JBC.M604417200 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5736 - 4.0903 1.00 2979 155 0.1467 0.1423 REMARK 3 2 4.0903 - 3.2479 1.00 2915 154 0.1265 0.1645 REMARK 3 3 3.2479 - 2.8377 1.00 2889 152 0.1453 0.1810 REMARK 3 4 2.8377 - 2.5784 1.00 2901 152 0.1473 0.1863 REMARK 3 5 2.5784 - 2.3937 1.00 2871 152 0.1500 0.1917 REMARK 3 6 2.3937 - 2.2526 1.00 2867 151 0.1504 0.1923 REMARK 3 7 2.2526 - 2.1398 1.00 2877 151 0.1490 0.1938 REMARK 3 8 2.1398 - 2.0467 1.00 2834 150 0.1442 0.2129 REMARK 3 9 2.0467 - 1.9679 1.00 2864 150 0.1604 0.2018 REMARK 3 10 1.9679 - 1.9000 1.00 2853 151 0.1769 0.2042 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 47.22 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2704 REMARK 3 ANGLE : 1.117 3668 REMARK 3 CHIRALITY : 0.082 415 REMARK 3 PLANARITY : 0.004 481 REMARK 3 DIHEDRAL : 16.069 1014 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 8:28) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6899 14.1877 47.5249 REMARK 3 T TENSOR REMARK 3 T11: 0.3360 T22: 0.3334 REMARK 3 T33: 0.2415 T12: -0.0319 REMARK 3 T13: 0.0291 T23: -0.0246 REMARK 3 L TENSOR REMARK 3 L11: 1.1310 L22: 0.6329 REMARK 3 L33: 0.0228 L12: 0.6833 REMARK 3 L13: -0.0995 L23: -0.1123 REMARK 3 S TENSOR REMARK 3 S11: 0.2487 S12: -0.3413 S13: 0.0832 REMARK 3 S21: 0.0961 S22: -0.2175 S23: -0.0057 REMARK 3 S31: -0.0295 S32: 0.0818 S33: 0.0046 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 29:115) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3811 11.1618 41.1602 REMARK 3 T TENSOR REMARK 3 T11: 0.2176 T22: 0.2516 REMARK 3 T33: 0.1919 T12: 0.0104 REMARK 3 T13: 0.0459 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.4247 L22: 1.1423 REMARK 3 L33: 0.2898 L12: 0.3346 REMARK 3 L13: 0.1686 L23: -0.2492 REMARK 3 S TENSOR REMARK 3 S11: 0.0734 S12: -0.1715 S13: -0.0064 REMARK 3 S21: 0.1966 S22: -0.0333 S23: 0.0897 REMARK 3 S31: -0.0247 S32: -0.0436 S33: -0.0238 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 116:160) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6507 -9.3810 32.1128 REMARK 3 T TENSOR REMARK 3 T11: 0.3005 T22: 0.2254 REMARK 3 T33: 0.2528 T12: 0.0028 REMARK 3 T13: 0.0212 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 2.0293 L22: 1.1599 REMARK 3 L33: 1.1680 L12: -0.6573 REMARK 3 L13: -0.7112 L23: -0.2947 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: 0.0076 S13: -0.3987 REMARK 3 S21: -0.3752 S22: -0.1287 S23: 0.0449 REMARK 3 S31: 0.3367 S32: 0.0225 S33: 0.0096 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 161:256) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8690 20.8230 39.3388 REMARK 3 T TENSOR REMARK 3 T11: 0.2541 T22: 0.2354 REMARK 3 T33: 0.1858 T12: 0.0106 REMARK 3 T13: 0.0330 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.3358 L22: 0.8106 REMARK 3 L33: 0.1498 L12: -0.2254 REMARK 3 L13: 0.1558 L23: -0.0059 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: -0.0900 S13: 0.0657 REMARK 3 S21: 0.0874 S22: -0.0691 S23: -0.0117 REMARK 3 S31: -0.0720 S32: -0.0455 S33: 0.0189 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 257:293) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3525 35.2155 34.3070 REMARK 3 T TENSOR REMARK 3 T11: 0.2723 T22: 0.2172 REMARK 3 T33: 0.2720 T12: -0.0120 REMARK 3 T13: 0.0046 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 1.2153 L22: 0.6470 REMARK 3 L33: 0.6888 L12: -0.6516 REMARK 3 L13: -0.0389 L23: -0.4306 REMARK 3 S TENSOR REMARK 3 S11: -0.0173 S12: 0.0780 S13: 0.2692 REMARK 3 S21: 0.0512 S22: -0.0655 S23: -0.1866 REMARK 3 S31: -0.1257 S32: -0.0116 S33: 0.0700 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 294:354) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4329 28.6314 37.1178 REMARK 3 T TENSOR REMARK 3 T11: 0.2511 T22: 0.2076 REMARK 3 T33: 0.2221 T12: 0.0084 REMARK 3 T13: 0.0211 T23: -0.0672 REMARK 3 L TENSOR REMARK 3 L11: 0.5760 L22: 0.1392 REMARK 3 L33: 0.6068 L12: 0.0124 REMARK 3 L13: -0.2086 L23: -0.0622 REMARK 3 S TENSOR REMARK 3 S11: 0.0225 S12: -0.1133 S13: 0.1460 REMARK 3 S21: -0.0029 S22: -0.0214 S23: -0.0036 REMARK 3 S31: -0.1921 S32: -0.0681 S33: -0.0158 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1290041895. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 433624 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 33.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 13.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1Y0Y REMARK 200 REMARK 200 REMARK: DATA WERE COLLECTED USING THE ROTATION METHOD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM SULPHATE, 0.085 M TRIS REMARK 280 HCL PH 8.5, 21.25% (W/V) PEG 3300, 2.0 MICROL DROPLETS TO WHICH REMARK 280 0.5 MICROL OF 30% GAMMA-BUTYROLACTONE IS ADDED REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.12050 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 66.12050 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 66.12050 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 66.12050 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 66.12050 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.12050 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 66.12050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.12050 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 66.12050 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 66.12050 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 66.12050 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 66.12050 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 66.12050 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 66.12050 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 66.12050 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 66.12050 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 66.12050 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 66.12050 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 66.12050 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 66.12050 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 66.12050 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 66.12050 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 66.12050 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 66.12050 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 66.12050 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 66.12050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 64280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 122050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1465.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 10 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 10 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 12 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 -1.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2075 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 ARG A 128 REMARK 465 GLY A 129 REMARK 465 GLN A 130 REMARK 465 GLU A 131 REMARK 465 ASP A 132 REMARK 465 LYS A 133 REMARK 465 GLY A 134 REMARK 465 SER A 135 REMARK 465 LYS A 136 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 202 OD1 OD2 REMARK 470 LYS A 348 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 9 125.70 45.52 REMARK 500 SER A 62 -67.71 -98.62 REMARK 500 SER A 63 145.65 -174.83 REMARK 500 ASN A 170 91.04 -160.50 REMARK 500 ASN A 175 -155.24 -159.94 REMARK 500 TYR A 183 31.18 73.22 REMARK 500 LYS A 306 -117.02 47.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 71 NE2 REMARK 620 2 ASP A 185 OD1 101.3 REMARK 620 3 ASP A 238 OD1 106.9 98.5 REMARK 620 4 ASP A 238 OD2 88.4 151.6 53.1 REMARK 620 5 CL A 405 CL 110.2 112.8 124.3 88.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 185 OD2 REMARK 620 2 GLU A 216 OE1 155.7 REMARK 620 3 GLU A 216 OE2 100.3 55.5 REMARK 620 4 HIS A 322 NE2 95.7 92.6 113.3 REMARK 620 5 CL A 405 CL 99.1 87.9 97.5 142.6 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 6-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 7-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 406 DBREF 2WZN A 1 354 UNP O59485 O59485_PYRHO 1 354 SEQADV 2WZN LYS A 306 UNP O59485 ARG 306 CONFLICT SEQRES 1 A 354 MET ASP LEU LYS GLY GLY GLU SER MET VAL ASP TRP LYS SEQRES 2 A 354 LEU MET GLN GLU ILE ILE GLU ALA PRO GLY VAL SER GLY SEQRES 3 A 354 TYR GLU HIS LEU GLY ILE ARG ASP ILE VAL VAL ASP VAL SEQRES 4 A 354 LEU LYS GLU VAL ALA ASP GLU VAL LYS VAL ASP LYS LEU SEQRES 5 A 354 GLY ASN VAL ILE ALA HIS PHE LYS GLY SER SER PRO ARG SEQRES 6 A 354 ILE MET VAL ALA ALA HIS MET ASP LYS ILE GLY VAL MET SEQRES 7 A 354 VAL ASN HIS ILE ASP LYS ASP GLY TYR LEU HIS ILE VAL SEQRES 8 A 354 PRO ILE GLY GLY VAL LEU PRO GLU THR LEU VAL ALA GLN SEQRES 9 A 354 ARG ILE ARG PHE PHE THR GLU LYS GLY GLU ARG TYR GLY SEQRES 10 A 354 VAL VAL GLY VAL LEU PRO PRO HIS LEU ARG ARG GLY GLN SEQRES 11 A 354 GLU ASP LYS GLY SER LYS ILE ASP TRP ASP GLN ILE VAL SEQRES 12 A 354 VAL ASP VAL GLY ALA SER SER LYS GLU GLU ALA GLU GLU SEQRES 13 A 354 MET GLY PHE ARG VAL GLY THR VAL GLY GLU PHE ALA PRO SEQRES 14 A 354 ASN PHE THR ARG LEU ASN GLU HIS ARG PHE ALA THR PRO SEQRES 15 A 354 TYR LEU ASP ASP ARG ILE CYS LEU TYR ALA MET ILE GLU SEQRES 16 A 354 ALA ALA ARG GLN LEU GLY ASP HIS GLU ALA ASP ILE TYR SEQRES 17 A 354 ILE VAL GLY SER VAL GLN GLU GLU VAL GLY LEU ARG GLY SEQRES 18 A 354 ALA ARG VAL ALA SER TYR ALA ILE ASN PRO GLU VAL GLY SEQRES 19 A 354 ILE ALA MET ASP VAL THR PHE ALA LYS GLN PRO HIS ASP SEQRES 20 A 354 LYS GLY LYS ILE VAL PRO GLU LEU GLY LYS GLY PRO VAL SEQRES 21 A 354 MET ASP VAL GLY PRO ASN ILE ASN PRO LYS LEU ARG ALA SEQRES 22 A 354 PHE ALA ASP GLU VAL ALA LYS LYS TYR GLU ILE PRO LEU SEQRES 23 A 354 GLN VAL GLU PRO SER PRO ARG PRO THR GLY THR ASP ALA SEQRES 24 A 354 ASN VAL MET GLN ILE ASN LYS GLU GLY VAL ALA THR ALA SEQRES 25 A 354 VAL LEU SER ILE PRO ILE ARG TYR MET HIS SER GLN VAL SEQRES 26 A 354 GLU LEU ALA ASP ALA ARG ASP VAL ASP ASN THR ILE LYS SEQRES 27 A 354 LEU ALA LYS ALA LEU LEU GLU GLU LEU LYS PRO MET ASP SEQRES 28 A 354 PHE THR PRO HET GOL A 360 6 HET GOL A 361 6 HET ZN A 401 1 HET ZN A 402 1 HET CL A 405 1 HET CL A 406 1 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 ZN 2(ZN 2+) FORMUL 6 CL 2(CL 1-) FORMUL 8 HOH *216(H2 O) HELIX 1 1 ASP A 11 ALA A 21 1 11 HELIX 2 2 TYR A 27 LEU A 30 5 4 HELIX 3 3 GLY A 31 GLU A 42 1 12 HELIX 4 4 LEU A 97 VAL A 102 5 6 HELIX 5 5 PRO A 123 ARG A 127 5 5 HELIX 6 6 ASP A 138 ILE A 142 5 5 HELIX 7 7 SER A 150 MET A 157 1 8 HELIX 8 8 TYR A 183 LEU A 200 1 18 HELIX 9 9 GLN A 214 GLY A 218 5 5 HELIX 10 10 LEU A 219 ASN A 230 1 12 HELIX 11 11 ASN A 268 TYR A 282 1 15 HELIX 12 12 ASP A 298 ILE A 304 1 7 HELIX 13 13 ALA A 330 LEU A 347 1 18 SHEET 1 AA 6 GLU A 46 VAL A 49 0 SHEET 2 AA 6 VAL A 55 PHE A 59 -1 O ILE A 56 N LYS A 48 SHEET 3 AA 6 ASP A 206 SER A 212 -1 O ILE A 207 N PHE A 59 SHEET 4 AA 6 ARG A 65 HIS A 71 1 O ILE A 66 N TYR A 208 SHEET 5 AA 6 VAL A 233 PHE A 241 1 O VAL A 233 N MET A 67 SHEET 6 AA 6 ALA A 310 ILE A 318 1 O ALA A 310 N GLY A 234 SHEET 1 AB 7 GLY A 76 ILE A 82 0 SHEET 2 AB 7 LEU A 88 ILE A 93 -1 O HIS A 89 N ASN A 80 SHEET 3 AB 7 VAL A 144 ASP A 145 -1 O VAL A 144 N LEU A 88 SHEET 4 AB 7 GLY A 113 VAL A 119 -1 O VAL A 118 N ASP A 145 SHEET 5 AB 7 ARG A 105 THR A 110 -1 O ILE A 106 N GLY A 117 SHEET 6 AB 7 VAL A 164 PHE A 167 -1 O VAL A 164 N PHE A 109 SHEET 7 AB 7 GLY A 76 ILE A 82 -1 O VAL A 77 N GLY A 165 SHEET 1 AC 3 THR A 172 ARG A 173 0 SHEET 2 AC 3 ARG A 178 ALA A 180 -1 O ALA A 180 N THR A 172 SHEET 3 AC 3 LEU A 327 ASP A 329 -1 O ALA A 328 N PHE A 179 SHEET 1 AD 2 VAL A 260 VAL A 263 0 SHEET 2 AD 2 GLN A 287 PRO A 290 1 O GLN A 287 N MET A 261 LINK NE2 HIS A 71 ZN ZN A 402 1555 1555 2.11 LINK OD2 ASP A 185 ZN ZN A 401 1555 1555 2.03 LINK OD1 ASP A 185 ZN ZN A 402 1555 1555 2.03 LINK OE1 GLU A 216 ZN ZN A 401 1555 1555 2.53 LINK OE2 GLU A 216 ZN ZN A 401 1555 1555 2.12 LINK OD1 ASP A 238 ZN ZN A 402 1555 1555 2.06 LINK OD2 ASP A 238 ZN ZN A 402 1555 1555 2.68 LINK NE2 HIS A 322 ZN ZN A 401 1555 1555 2.16 LINK ZN ZN A 401 CL CL A 405 1555 1555 2.40 LINK ZN ZN A 402 CL CL A 405 1555 1555 2.13 CISPEP 1 SER A 63 PRO A 64 0 -3.19 CISPEP 2 ASP A 185 ASP A 186 0 0.24 SITE 1 AC1 4 PHE A 109 THR A 163 VAL A 164 HOH A2215 SITE 1 AC2 1 ARG A 173 SITE 1 AC3 6 ASP A 185 GLU A 216 HIS A 322 ZN A 402 SITE 2 AC3 6 CL A 405 HOH A2216 SITE 1 AC4 5 HIS A 71 ASP A 185 ASP A 238 ZN A 401 SITE 2 AC4 5 CL A 405 SITE 1 AC5 9 HIS A 71 ASP A 185 GLU A 215 GLU A 216 SITE 2 AC5 9 ASP A 238 ZN A 401 ZN A 402 HOH A2135 SITE 3 AC5 9 HOH A2216 SITE 1 AC6 1 ARG A 65 CRYST1 132.241 132.241 132.241 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007562 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007562 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007562 0.00000